Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 3.3e-113 411.8 213 100.0
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 3.7e-88 328.6 217 81.6
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 4.0e-87 325.1 214 83.6
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.9e-81 306.2 214 78.0
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 4.3e-81 305.1 214 78.0
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 7.4e-81 304.3 214 78.0
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 1.7e-61 240.0 200 66.5
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 5.0e-61 238.4 199 65.8
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 5.5e-60 235.0 213 64.8
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 1.0e-58 230.7 221 58.8
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.8e-58 229.9 196 64.3
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 9.7e-57 224.2 215 60.9
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 1.4e-55 220.3 211 57.3
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 3.1e-55 219.2 223 57.4
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 3.5e-54 215.7 209 63.6
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 3.5e-54 215.7 206 58.7
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 7.7e-54 214.5 157 75.8
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 4.2e-52 208.8 216 56.9
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 2.7e-51 206.1 215 55.3
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 4.7e-51 205.3 204 58.8
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 8.0e-51 204.5 221 56.1
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 1.0e-50 204.1 216 55.6
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 1.4e-50 203.8 214 56.5
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 3.0e-50 202.6 205 57.1
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 1.5e-49 200.3 205 60.0
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 2.6e-49 199.5 220 56.4
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 2.6e-49 199.5 211 56.9
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 3.3e-49 199.1 162 69.1
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 3.3e-49 199.1 219 55.7
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 5.7e-49 198.4 221 57.0
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 9.7e-49 197.6 213 54.5
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 3.7e-48 195.7 203 56.7
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 3.7e-48 195.7 208 58.2
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 4.8e-48 195.3 212 53.8
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 6.3e-48 194.9 205 53.2
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 2.4e-47 193.0 188 60.6
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 5.3e-47 191.8 205 53.2
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 1.0e-45 187.6 219 54.8
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 2.2e-45 186.4 160 63.8
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 2.2e-45 186.4 198 55.1
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 6.5e-45 184.9 218 52.3
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 6.5e-45 184.9 195 54.4
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 8.5e-45 184.5 218 53.7
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 1.1e-44 184.1 216 50.0
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 1.1e-44 184.1 197 53.3
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.5e-44 183.7 214 52.8
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 1.9e-44 183.3 216 50.0
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 3.2e-44 182.6 208 53.8
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 3.2e-44 182.6 193 56.0
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.5e-44 181.8 214 52.8
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.1e-43 179.9 214 51.9
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 6.1e-43 178.3 214 51.9
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 6.1e-43 178.3 209 51.7
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 3.0e-42 176.0 159 59.7
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 8.8e-42 174.5 203 52.2
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 8.8e-42 174.5 219 50.2
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 2.6e-41 172.9 204 52.0
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 4.4e-41 172.2 199 50.8
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 5.7e-41 171.8 209 52.2
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 5.7e-41 171.8 220 53.6
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 7.5e-41 171.4 164 60.4
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 7.5e-41 171.4 213 51.6
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 7.5e-41 171.4 213 51.6
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 1.3e-40 170.6 220 51.4
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 1.3e-40 170.6 207 49.3
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 1.7e-40 170.2 226 50.0
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 1.7e-40 170.2 206 51.5
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 2.2e-40 169.9 194 51.0
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 2.2e-40 169.9 163 59.5
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 2.8e-40 169.5 199 51.8
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 3.7e-40 169.1 248 46.4
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 8.3e-40 167.9 221 50.2
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 1.1e-39 167.5 221 51.1
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 4.1e-39 165.6 127 69.3
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 1.6e-38 163.7 222 51.4
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 1.7e-37 160.2 253 45.8
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 2.9e-37 159.5 224 47.8
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 2.9e-37 159.5 224 47.8
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 2.9e-37 159.5 224 47.8
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 1.1e-36 157.5 163 53.4
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 1.5e-36 157.1 221 48.0
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 2.5e-36 156.4 162 55.6
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 4.2e-36 155.6 162 55.6
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 7.2e-36 154.8 229 47.6
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 1.2e-35 154.1 247 45.3
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 3.6e-35 152.5 225 46.2
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 8.0e-35 151.4 225 48.4
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 1.0e-34 151.0 109 67.0
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 3.0e-34 149.4 232 45.7
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 3.0e-34 149.4 232 45.7
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 4.0e-34 149.1 163 53.4
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 1.5e-33 147.1 158 51.3
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 4.4e-33 145.6 249 42.2
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 7.5e-33 144.8 121 62.0
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 1.3e-32 144.1 221 44.3
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 1.7e-32 143.7 158 52.5
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 1.7e-32 143.7 175 51.4
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 2.8e-32 142.9 222 44.6
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 1.1e-31 141.0 187 50.3
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 1.4e-31 140.6 218 45.0
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 1.4e-31 140.6 217 44.7
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 9.2e-31 137.9 202 48.5
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 1.6e-30 137.1 215 43.7
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 2.3e-29 133.3 212 42.5
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 5.0e-29 132.1 216 44.4
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 8.6e-29 131.3 94 70.2
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 8.6e-29 131.3 94 70.2
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 8.6e-29 131.3 94 70.2
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 1.1e-28 131.0 90 65.6
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 2.1e-27 126.7 170 47.1
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 2.2e-24 116.7 163 45.4
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 3.2e-23 112.8 86 61.6
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 3.0e-21 106.3 94 55.3
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 3.0e-21 106.3 94 55.3
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 9.5e-20 101.3 204 40.7
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 6.2e-19 98.6 96 55.2
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 2.2e-16 90.1 123 37.4
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 4.9e-16 89.0 58 75.9
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 8.3e-16 88.2 195 38.5
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 1.4e-15 87.4 69 71.0
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 3.2e-15 86.3 112 50.0
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 4.1e-15 85.9 100 45.0
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 4.1e-15 85.9 100 45.0
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 4.0e-10 69.3 68 50.0
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 1.2e-09 67.8 62 50.0
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 1.3e-08 64.3 41 65.9
FAN22G1271 Fragaria x ananassa HOM05D038641 ORTHO05D035590 6.4e-08 62.0 65 55.4
Glyma.09G185300 Glycine max HOM05D005829 ORTHO05D007246 1.1e-07 61.2 112 35.7
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 1.4e-07 60.8 224 29.5
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 9.2e-07 58.2 234 28.2
Glyma.07G090700 Glycine max HOM05D005829 ORTHO05D007246 2.1e-06 57.0 105 34.3
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 3.5e-06 56.2 41 61.0


User provided reference genes

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