Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G299300 Theobroma cacao HOM05D006757 ORTHO05D004651 0.0e+00 1335.5 780 100.0
Duzib248G0842 Durio zibethinus HOM05D006757 ORTHO05D004651 9.9e-309 1063.1 781 82.6
Gohir.D01G136700 Gossypium hirsutum HOM05D006757 ORTHO05D004651 6.0e-298 1027.3 782 80.1
Gorai.002G169200 Gossypium raimondii HOM05D006757 ORTHO05D004651 1.0e-297 1026.5 782 80.1
Gohir.A01G144000 Gossypium hirsutum HOM05D006757 ORTHO05D004651 1.8e-294 1015.8 782 78.4
COL.COLO4_27539 Corchorus olitorius HOM05D006757 ORTHO05D004651 1.3e-268 929.9 725 79.6
CiPaw.05G164400 Carya illinoinensis HOM05D006757 ORTHO05D004651 1.4e-201 707.2 743 63.5
TWI53G1444 Tripterygium wilfordii HOM05D006757 ORTHO05D004651 2.5e-195 686.4 784 60.3
Prupe.1G340900 Prunus persica HOM05D006757 ORTHO05D004651 3.7e-194 682.6 790 59.4
QL03p041041 Quercus lobata HOM05D006757 ORTHO05D004651 2.2e-191 673.3 891 54.8
CSS0018736 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 1.8e-188 663.7 790 58.6
MD16G1009700 Malus domestica HOM05D006757 ORTHO05D004651 4.8e-186 655.6 786 57.9
GSVIVG01010290001 Vitis vinifera HOM05D006757 ORTHO05D004651 2.9e-183 646.4 676 63.0
Sabra10G0071900 Salix brachista HOM05D006757 ORTHO05D004651 8.4e-183 644.8 861 46.1
Dinv02708 Davidia involucrata HOM05D006757 ORTHO05D004651 4.2e-182 642.5 793 58.4
RcHm_v2.0_Chr4g0445651 Rosa chinensis HOM05D006757 ORTHO05D004651 8.7e-180 634.8 780 56.7
TAR622G0072 Trochodendron aralioides HOM05D006757 ORTHO05D004651 3.4e-176 622.9 798 56.4
FAN17G2536 Fragaria x ananassa HOM05D006757 ORTHO05D004651 7.7e-176 621.7 790 56.5
FAN12G3615 Fragaria x ananassa HOM05D006757 ORTHO05D004651 2.3e-172 610.1 784 56.0
CANSAT78G0289 Cannabis sativa HOM05D006757 ORTHO05D004651 2.2e-170 603.6 706 59.6
Actinidia12418 Actinidia chinensis HOM05D006757 ORTHO05D004651 1.8e-169 600.5 779 54.2
MELO3C005216.2 Cucumis melo HOM05D006757 ORTHO05D004651 2.0e-168 597.0 784 55.4
PGR142G0977 Punica granatum HOM05D006757 ORTHO05D004651 2.6e-168 596.7 709 58.0
Ciclev10006553m.g Citrus clementina HOM05D006757 ORTHO05D004651 3.4e-168 596.3 641 64.3
CsaV3_5G017370 Cucumis sativus L. HOM05D006757 ORTHO05D004651 2.2e-167 593.6 787 55.3
ClCG01G006950 Citrullus lanatus HOM05D006757 ORTHO05D004651 1.1e-166 591.3 797 54.7
Manes.17G092000 Manihot esculenta HOM05D006757 ORTHO05D004651 6.1e-165 585.5 636 63.4
Ca_11197_v3 Cicer arietinum L. HOM05D006757 ORTHO05D004651 1.8e-164 583.9 667 50.2
Lj5g0011768 Lotus japonicus HOM05D006757 ORTHO05D004651 3.3e-163 579.7 738 55.0
Lj6C727G2 Lonicera japonica HOM05D006757 ORTHO05D004651 1.3e-162 577.8 831 51.1
Nn4g24781 Nelumbo nucifera HOM05D006757 ORTHO05D004651 5.3e-161 572.4 787 51.5
Glyma.10G280500 Glycine max HOM05D006757 ORTHO05D004651 1.2e-160 571.2 784 53.8
Lalb_Chr21g0306871 Lupinus albus HOM05D006757 ORTHO05D004651 2.6e-160 570.1 729 55.1
VMungo0720G1053 Vigna mungo HOM05D006757 ORTHO05D004651 5.0e-159 565.8 787 52.9
FAN07G0462 Fragaria x ananassa HOM05D006757 ORTHO05D004651 4.2e-158 562.8 777 52.1
FAN22G1875 Fragaria x ananassa HOM05D006757 ORTHO05D004651 4.2e-158 562.8 841 51.4
FvH4_4g36030 Fragaria vesca HOM05D006757 ORTHO05D004651 6.7e-156 555.4 632 61.1
Phvul.007G020500 Phaseolus vulgaris HOM05D006757 ORTHO05D004651 1.5e-155 554.3 670 49.0
arahy.Tifrunner.gnm1.ann1.18R96V Arachis hypogaea HOM05D006757 ORTHO05D004651 3.3e-155 553.1 776 52.7
arahy.Tifrunner.gnm1.ann1.CLVE3A Arachis hypogaea HOM05D006757 ORTHO05D004651 1.7e-154 550.8 776 52.7
TPR.G2437 Trifolium pratense HOM05D006757 ORTHO05D004651 3.7e-154 549.7 666 49.2
Rhsim09G0078600 Rhododendron simsii HOM05D006757 ORTHO05D004651 6.3e-154 548.9 822 51.0
Psat6g231440 Pisum sativum HOM05D006757 ORTHO05D004651 1.6e-149 534.3 779 52.0
Medtr1g112280 Medicago truncatula HOM05D006757 ORTHO05D004651 1.8e-148 530.8 773 51.7
Aqoxy3G04184 Aquilegia oxysepala HOM05D006757 ORTHO05D004651 2.0e-147 527.3 746 51.5
Atru.chr11.1028 Acer truncatum HOM05D006757 ORTHO05D004651 1.3e-143 514.6 470 58.9
Solyc01g007880.4 Solanum lycopersicum HOM05D006757 ORTHO05D004651 1.9e-142 510.8 716 51.7
Sopen01g003410 Solanum pennellii HOM05D006757 ORTHO05D004651 3.4e-139 500.0 784 48.5
MSTRG.2098 Avicennia marina HOM05D006757 ORTHO05D004651 4.8e-138 496.1 747 49.7
EL10Ac6g15397 Beta vulgaris HOM05D006757 ORTHO05D004651 4.1e-137 493.0 700 51.9
Eucgr.G02041 Eucalyptus grandis HOM05D006757 ORTHO05D004651 2.7e-136 490.3 657 54.8
PSO063G3495 Papaver somniferum HOM05D006757 ORTHO05D004651 3.5e-136 490.0 600 48.0
ECA233G5323 Erigeron canadensis HOM05D006757 ORTHO05D004651 1.2e-133 481.5 706 50.8
vmacro10765 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 1.6e-133 481.1 693 52.7
HanXRQChr12g0365871 Helianthus annuus HOM05D006757 ORTHO05D004651 3.6e-133 479.9 733 49.9
Migut.E00572 Erythranthe guttata HOM05D006757 ORTHO05D004651 1.5e-131 474.6 738 50.9
Potri.010G099300 Populus trichocarpa HOM05D006757 ORTHO05D004651 2.0e-131 474.2 546 63.7
Sp5g30140 Schrenkiella parvula HOM05D006757 ORTHO05D004651 1.4e-129 468.0 780 47.4
Nitab4.5_0004543g0020 Nicotiana tabacum HOM05D006757 ORTHO05D004651 5.4e-129 466.1 665 50.1
Thhalv10018185m.g Eutrema salsugineum HOM05D006757 ORTHO05D004651 4.5e-128 463.0 777 48.8
BraA07t31608Z Brassica rapa HOM05D006757 ORTHO05D004651 1.3e-127 461.5 787 48.3
Lsat_1_v5_gn_8_33901 Lactuca sativa HOM05D006757 ORTHO05D004651 2.9e-127 460.3 776 46.1
AL2G34890 Arabidopsis lyrata HOM05D006757 ORTHO05D004651 3.9e-127 459.9 778 47.8
BcaC08g46956 Brassica carinata HOM05D006757 ORTHO05D004651 3.9e-127 459.9 780 49.0
A07p40640 Brassica napus HOM05D006757 ORTHO05D004651 1.1e-126 458.4 785 48.7
AUR62017786 Chenopodium quinoa HOM05D006757 ORTHO05D004651 9.5e-126 455.3 795 46.0
BcaC08g46933 Brassica carinata HOM05D006757 ORTHO05D004651 6.1e-125 452.6 709 51.8
AT1G75010 Arabidopsis thaliana HOM05D006757 ORTHO05D004651 3.1e-124 450.3 783 47.1
Aa31LG4G5230 Aethionema arabicum HOM05D006757 ORTHO05D004651 5.2e-124 449.5 783 47.4
BolC6t39938H Brassica oleracea HOM05D006757 ORTHO05D004651 9.8e-123 445.3 785 48.5
Carub.0002s2179 Capsella rubella HOM05D006757 ORTHO05D004651 8.3e-122 442.2 774 46.4
C06p49010 Brassica napus HOM05D006757 ORTHO05D004651 9.2e-121 438.7 808 47.3
SGA_v2.0_scaffold470G52072 Striga asiatica HOM05D006757 ORTHO05D004651 3.5e-120 436.8 732 46.3
ATR0807G004 Amborella trichopoda HOM05D006757 ORTHO05D004651 4.6e-120 436.4 702 39.3
THA.LOC104809054 Tarenaya hassleriana HOM05D006757 ORTHO05D004651 1.3e-119 434.9 780 47.1
Cc11_g03340 Coffea canephora HOM05D006757 ORTHO05D004651 1.7e-119 434.5 664 50.3
Sed0027541 Sechium edule HOM05D006757 ORTHO05D004651 3.9e-119 433.3 574 58.4
AUR62003477 Chenopodium quinoa HOM05D006757 ORTHO05D004651 9.5e-118 428.7 647 51.0
Cpa.g.sc2.85 Carica papaya HOM05D006757 ORTHO05D004651 3.1e-116 423.7 473 50.5
DCAR_030323 Daucus carota HOM05D006757 ORTHO05D004651 2.6e-115 420.6 644 43.6
CARHR068320 Cardamine hirsuta HOM05D006757 ORTHO05D004651 8.9e-108 395.6 630 50.3
Peaxi162Scf00097g00232 Petunia axillaris HOM05D006757 ORTHO05D004651 4.0e-100 370.2 630 47.1
Os09g0555600 Oryza sativa ssp. japonica HOM05D006757 ORTHO05D004651 7.8e-96 355.9 612 38.1
Sc17g0005480 Simmondsia chinensis HOM05D006757 ORTHO05D004651 3.4e-91 340.5 586 50.2
CAN.G282.84 Capsicum annuum HOM05D006757 ORTHO05D004651 3.8e-90 337.0 538 51.1
SalBow2G2705 Salvia bowleyana HOM05D006757 ORTHO05D004651 1.3e-87 328.6 577 46.8
HPP92_025367 Vanilla planifolia HOM05D006757 ORTHO05D004651 9.0e-84 315.8 702 42.6
BcaNung05827 Brassica carinata HOM05D006757 ORTHO05D004651 2.6e-75 287.7 786 34.2
Hma1.2p1_0933F.1_g238410 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 5.8e-75 286.6 457 55.6
unitig_699.g19471 Utricularia gibba HOM05D006757 ORTHO05D004651 1.9e-73 281.6 731 37.2
Nitab4.5_0000944g0040 Nicotiana tabacum HOM05D006757 ORTHO05D004651 1.0e-66 259.2 247 51.8
Haze_10724 Corylus avellana HOM05D006757 ORTHO05D004651 2.9e-66 257.7 440 51.8
COL.COLO4_13886 Corchorus olitorius HOM05D003428 ORTHO05D004131 5.0e-66 256.9 293 54.3
Hma1.2p1_0933F.1_g238400 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 3.5e-64 250.8 343 43.7
Oeu001141.1 Olea europaea HOM05D006757 ORTHO05D004651 1.4e-55 222.2 237 52.7
BolC2t09256H Brassica oleracea HOM05D006757 ORTHO05D004651 2.3e-55 221.5 500 32.4
Hund12802 Selenicereus undatus HOM05D006757 ORTHO05D004651 9.1e-52 209.5 413 52.3
BcaC03g15537 Brassica carinata HOM05D006757 ORTHO05D004651 6.1e-48 196.8 455 34.1
CSS0036943 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 9.7e-46 189.5 175 55.4
Mapoly0058s0047 Marchantia polymorpha HOM05D006757 ORTHO05D004651 1.4e-36 159.1 653 27.9
SalBow2G2121 Salvia bowleyana HOM05D006757 ORTHO05D004651 2.9e-34 151.4 218 44.0
CSS0016054 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 1.7e-29 135.6 205 43.9
Ciclev10006110m.g Citrus clementina HOM05D006757 ORTHO05D004651 5.5e-25 120.6 153 48.4
Actinidia37474 Actinidia chinensis HOM05D006757 ORTHO05D004651 5.7e-22 110.5 146 48.6
Zm00001eb320640 Zea mays HOM05D006757 ORTHO05D004651 9.8e-22 109.8 163 40.5
SEGI_38740 Sequoiadendron giganteum HOM05D006757 ORTHO05D004651 1.7e-21 109.0 279 32.6
CDE04G1248 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 9.1e-20 103.2 74 68.9
CDE04G0645 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 2.6e-14 85.1 247 28.7
Peaxi162Scf00097g02317 Petunia axillaris HOM05D006757 ORTHO05D004651 3.4e-14 84.7 77 55.8
CSS0046499 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 4.4e-14 84.3 45 82.2
Glyma.20G109150 Glycine max HOM05D006757 ORTHO05D004651 1.7e-13 82.4 81 50.6
Cc11_g03350 Coffea canephora HOM05D006757 ORTHO05D004651 1.7e-10 72.4 108 42.6
vmacro10766 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 1.7e-10 72.4 133 36.1
Gohir.D01G071400 Gossypium hirsutum HOM05D001616 ORTHO05D004707 1.6e-08 65.9 368 23.6
Thecc.07G026200 Theobroma cacao HOM05D001616 ORTHO05D004707 3.6e-08 64.7 362 24.0
Gorai.002G094200 Gossypium raimondii HOM05D001616 ORTHO05D004707 4.7e-08 64.3 368 23.6
Haze_10728 Corylus avellana HOM05D063416 ORTHO05D034208 8.0e-08 63.5 106 39.6
Hund01947 Selenicereus undatus HOM05D001616 ORTHO05D004707 1.0e-07 63.2 356 24.7
Aqoxy1G04093 Aquilegia oxysepala HOM05D001616 ORTHO05D004707 3.1e-07 61.6 334 23.7
Gohir.A01G085100 Gossypium hirsutum HOM05D001616 ORTHO05D004707 4.0e-07 61.2 323 24.5
Dinv40805 Davidia involucrata HOM05D001616 ORTHO05D004707 8.9e-07 60.1 328 24.1
Gohir.D13G140300 Gossypium hirsutum HOM05D001616 ORTHO05D004707 1.2e-06 59.7 367 23.4
Gorai.013G156900 Gossypium raimondii HOM05D001616 ORTHO05D004707 1.2e-06 59.7 367 23.4
Nn4g22291 Nelumbo nucifera HOM05D001616 ORTHO05D004707 2.0e-06 58.9 355 25.1
THA.LOC104811637 Tarenaya hassleriana HOM05D001616 ORTHO05D004707 2.0e-06 58.9 425 24.0
Actinidia10755 Actinidia chinensis HOM05D001616 ORTHO05D004707 2.6e-06 58.5 339 23.0
FvH4_3g23650 Fragaria vesca HOM05D001616 ORTHO05D004707 3.4e-06 58.2 331 23.6
BcaC03g14249 Brassica carinata HOM05D001616 ORTHO05D004707 4.4e-06 57.8 369 24.1
Dinv22222 Davidia involucrata HOM05D001616 ORTHO05D004707 4.4e-06 57.8 328 23.5
Psat2g010320 Pisum sativum HOM05D001616 ORTHO05D004707 4.4e-06 57.8 336 23.5
RcHm_v2.0_Chr5g0041711 Rosa chinensis HOM05D001616 ORTHO05D004707 4.4e-06 57.8 309 24.3
TAR624G0334 Trochodendron aralioides HOM05D001616 ORTHO05D004707 4.4e-06 57.8 309 24.3
unitig_27.g25147 Utricularia gibba HOM05D001616 ORTHO05D004707 4.4e-06 57.8 309 23.9
BolC2t07731H Brassica oleracea HOM05D001616 ORTHO05D004707 5.8e-06 57.4 369 24.1
CSS0024025 Camellia sinensis var. sinensis HOM05D001616 ORTHO05D004707 5.8e-06 57.4 309 23.9
Duzib213G0357 Durio zibethinus HOM05D001616 ORTHO05D004707 5.8e-06 57.4 309 23.6
Duzib268G1580 Durio zibethinus HOM05D001616 ORTHO05D004707 5.8e-06 57.4 377 23.3
Gohir.A13G136000 Gossypium hirsutum HOM05D001616 ORTHO05D004707 5.8e-06 57.4 367 23.4
Lalb_Chr10g0107201 Lupinus albus HOM05D001616 ORTHO05D004707 5.8e-06 57.4 360 23.1
Sc03g0008260 Simmondsia chinensis HOM05D001616 ORTHO05D004707 5.8e-06 57.4 309 23.6
TPR.G18336 Trifolium pratense HOM05D001616 ORTHO05D004707 5.8e-06 57.4 363 22.9
BcaB05g22196 Brassica carinata HOM05D001616 ORTHO05D004707 7.5e-06 57.0 376 23.9
AT5G55280 Arabidopsis thaliana HOM05D001616 ORTHO05D004707 9.8e-06 56.6 371 24.0
MSTRG.14463 Avicennia marina HOM05D001616 ORTHO05D004707 9.8e-06 56.6 342 24.6
C02p16300 Brassica napus HOM05D001616 ORTHO05D004707 9.8e-06 56.6 381 23.4
CANSAT11G0668 Cannabis sativa HOM05D001616 ORTHO05D004707 9.8e-06 56.6 309 23.9
MELO3C014156.2 Cucumis melo HOM05D001616 ORTHO05D004707 9.8e-06 56.6 309 23.9
CsaV3_3G004580 Cucumis sativus L. HOM05D001616 ORTHO05D004707 9.8e-06 56.6 309 23.9
ECA236G1385 Erigeron canadensis HOM05D001954 ORTHO05D004707 9.8e-06 56.6 352 24.7
PSO210G3145 Papaver somniferum HOM05D001616 ORTHO05D004707 9.8e-06 56.6 344 23.0
PSO302G0169 Papaver somniferum HOM05D001616 ORTHO05D004707 9.8e-06 56.6 344 23.0


User provided reference genes

Program Settings