Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G247800 Theobroma cacao HOM05D006231 ORTHO05D007857 4.1e-187 657.9 333 100.0
Duzib248G0169 Durio zibethinus HOM05D006231 ORTHO05D007857 9.0e-142 507.3 303 86.1
COL.COLO4_19536 Corchorus olitorius HOM05D006231 ORTHO05D007857 4.3e-136 488.4 304 83.9
Gohir.D05G320900 Gossypium hirsutum HOM05D006231 ORTHO05D007857 2.8e-135 485.7 301 83.4
Gorai.009G344200 Gossypium raimondii HOM05D006231 ORTHO05D007857 8.1e-135 484.2 301 83.1
Gohir.D02G165000 Gossypium hirsutum HOM05D006231 ORTHO05D007857 2.0e-133 479.6 301 82.7
Gohir.A05G318600 Gossypium hirsutum HOM05D006231 ORTHO05D007857 5.1e-129 464.9 301 81.1
Gorai.005G184900 Gossypium raimondii HOM05D006231 ORTHO05D007857 6.9e-110 401.4 301 73.1
Ciclev10032202m.g Citrus clementina HOM05D006231 ORTHO05D007857 1.5e-104 383.6 303 67.3
QL03p062170 Quercus lobata HOM05D006231 ORTHO05D007857 4.5e-101 372.1 313 65.8
Atru.chr11.1975 Acer truncatum HOM05D006231 ORTHO05D007857 5.5e-99 365.2 313 66.1
Eucgr.B02548 Eucalyptus grandis HOM05D006231 ORTHO05D007857 2.7e-98 362.8 278 68.3
THA.LOC104822957 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 3.6e-98 362.5 308 63.6
Cfa009127 Carpinus fangiana HOM05D006231 ORTHO05D007857 3.0e-97 359.4 314 64.0
TAR629G0133 Trochodendron aralioides HOM05D006231 ORTHO05D007857 8.8e-97 357.8 313 62.6
Dinv24894 Davidia involucrata HOM05D006231 ORTHO05D007857 1.1e-96 357.5 300 63.7
THA.LOC104822056 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 1.1e-94 350.9 312 61.9
FvH4_4g34910 Fragaria vesca HOM05D006231 ORTHO05D007857 1.4e-94 350.5 325 59.7
TWI36G0577 Tripterygium wilfordii HOM05D006231 ORTHO05D007857 1.8e-94 350.1 300 62.3
PGSC0003DMG400004132 Solanum tuberosum HOM05D006231 ORTHO05D007857 2.4e-94 349.7 302 63.2
CiPaw.05G148900 Carya illinoinensis HOM05D006231 ORTHO05D007857 5.3e-94 348.6 307 63.8
Thhalv10008192m.g Eutrema salsugineum HOM05D006231 ORTHO05D007857 9.1e-94 347.8 302 62.6
Manes.01G197500 Manihot esculenta HOM05D006231 ORTHO05D007857 1.2e-93 347.4 321 60.7
Aa31LG7G7830 Aethionema arabicum HOM05D006231 ORTHO05D007857 1.6e-93 347.1 312 60.6
AL1G37790 Arabidopsis lyrata HOM05D006231 ORTHO05D007857 1.6e-93 347.1 301 61.8
BcaC05g26301 Brassica carinata HOM05D006231 ORTHO05D007857 1.6e-93 347.1 326 58.0
BolC5t31019H Brassica oleracea HOM05D006231 ORTHO05D007857 1.6e-93 347.1 326 58.0
CARHR024340 Cardamine hirsuta HOM05D006231 ORTHO05D007857 2.6e-93 346.3 304 60.5
Sp1g21370 Schrenkiella parvula HOM05D006231 ORTHO05D007857 2.6e-93 346.3 303 61.7
C05p23180 Brassica napus HOM05D006231 ORTHO05D007857 3.5e-93 345.9 318 58.8
CAN.G505.18 Capsicum annuum HOM05D006231 ORTHO05D007857 4.5e-93 345.5 303 61.1
RcHm_v2.0_Chr4g0444351 Rosa chinensis HOM05D006231 ORTHO05D007857 1.7e-92 343.6 330 58.2
BcaB07g32378 Brassica carinata HOM05D006231 ORTHO05D007857 2.2e-92 343.2 311 59.5
AT1G24040 Arabidopsis thaliana HOM05D006231 ORTHO05D007857 2.9e-92 342.8 300 62.0
MELO3C012017.2 Cucumis melo HOM05D006231 ORTHO05D007857 2.9e-92 342.8 300 63.3
CsaV3_5G031780 Cucumis sativus L. HOM05D006231 ORTHO05D007857 2.9e-92 342.8 300 62.7
Carub.0001s2346 Capsella rubella HOM05D006231 ORTHO05D007857 3.8e-92 342.4 309 59.9
Sopen05g001920 Solanum pennellii HOM05D006231 ORTHO05D007857 5.0e-92 342.0 309 60.2
Nitab4.5_0001474g0130 Nicotiana tabacum HOM05D006231 ORTHO05D007857 6.5e-92 341.7 309 59.5
Nitab4.5_0004963g0030 Nicotiana tabacum HOM05D006231 ORTHO05D007857 6.5e-92 341.7 308 59.7
Oeu046714.1 Olea europaea HOM05D006231 ORTHO05D007857 1.1e-91 340.9 310 59.7
vmacro16274 Vaccinium macrocarpon HOM05D006231 ORTHO05D007857 1.9e-91 340.1 267 67.0
ClCG05G025120 Citrullus lanatus HOM05D006231 ORTHO05D007857 4.2e-91 339.0 302 61.9
PGR119G0912 Punica granatum HOM05D006231 ORTHO05D007857 7.2e-91 338.2 291 62.2
arahy.Tifrunner.gnm1.ann1.FQS9XH Arachis hypogaea HOM05D006231 ORTHO05D007857 1.2e-90 337.4 313 59.1
arahy.Tifrunner.gnm1.ann1.XK2UET Arachis hypogaea HOM05D006231 ORTHO05D007857 1.2e-90 337.4 313 59.1
FAN12G2615 Fragaria x ananassa HOM05D006231 ORTHO05D007857 2.1e-90 336.7 311 60.1
MD16G1088300 Malus domestica HOM05D006231 ORTHO05D007857 3.6e-90 335.9 338 55.6
Haze_12158 Corylus avellana HOM05D006231 ORTHO05D007857 8.0e-90 334.7 230 75.7
Aqoxy3G00933 Aquilegia oxysepala HOM05D006231 ORTHO05D007857 1.4e-89 334.0 262 66.4
Lj2g0015887 Lotus japonicus HOM05D006231 ORTHO05D007857 1.4e-89 334.0 315 59.4
Actinidia15012 Actinidia chinensis HOM05D006231 ORTHO05D007857 3.0e-89 332.8 294 60.9
Nn4g22867 Nelumbo nucifera HOM05D006231 ORTHO05D007857 1.2e-88 330.9 318 58.2
Sed0009573 Sechium edule HOM05D006231 ORTHO05D007857 3.4e-88 329.3 305 59.7
Potri.008G146000 Populus trichocarpa HOM05D006231 ORTHO05D007857 4.4e-88 328.9 290 60.7
MSTRG.613 Avicennia marina HOM05D006231 ORTHO05D007857 9.7e-88 327.8 294 60.2
CSS0002380 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.3e-87 327.4 309 57.9
CANSAT01G1818 Cannabis sativa HOM05D006231 ORTHO05D007857 2.8e-87 326.2 314 61.1
Cc11_g14350 Coffea canephora HOM05D006231 ORTHO05D007857 2.8e-87 326.2 278 60.1
Hma1.2p1_1017F.1_g248270 Hydrangea macrophylla HOM05D006231 ORTHO05D007857 2.8e-87 326.2 306 58.8
CSS0044234 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.1e-86 324.3 309 56.3
Gohir.A03G141850 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.1e-86 324.3 221 79.2
Lalb_Chr09g0326451 Lupinus albus HOM05D006231 ORTHO05D007857 3.1e-86 322.8 273 62.3
Prupe.1G258300 Prunus persica HOM05D006231 ORTHO05D007857 4.1e-86 322.4 341 53.4
FAN22G0458 Fragaria x ananassa HOM05D006231 ORTHO05D007857 1.2e-85 320.9 332 55.7
FAN17G2958 Fragaria x ananassa HOM05D006231 ORTHO05D007857 2.0e-85 320.1 325 56.6
FAN07G0090 Fragaria x ananassa HOM05D006231 ORTHO05D007857 3.5e-85 319.3 325 56.0
MD13G1088000 Malus domestica HOM05D006231 ORTHO05D007857 4.5e-85 318.9 352 52.6
Potri.010G095800 Populus trichocarpa HOM05D006231 ORTHO05D007857 2.2e-84 316.6 328 53.7
BraA09t39576Z Brassica rapa HOM05D006231 ORTHO05D007857 8.5e-84 314.7 296 56.8
A09p40810 Brassica napus HOM05D006231 ORTHO05D007857 1.9e-83 313.5 296 56.4
PSO017G5161 Papaver somniferum HOM05D006231 ORTHO05D007857 7.2e-83 311.6 307 56.4
PSO478G5064 Papaver somniferum HOM05D006231 ORTHO05D007857 1.2e-82 310.8 306 56.2
SalBow2G0481 Salvia bowleyana HOM05D006231 ORTHO05D007857 6.1e-82 308.5 251 62.9
Glyma.01G034200 Glycine max HOM05D006231 ORTHO05D007857 1.4e-81 307.4 310 57.1
Psat2g109920 Pisum sativum HOM05D006231 ORTHO05D007857 8.8e-81 304.7 301 56.1
Peaxi162Scf00421g00419 Petunia axillaris HOM05D006231 ORTHO05D007857 1.7e-79 300.4 300 57.0
Ca_04621_v3 Cicer arietinum L. HOM05D006231 ORTHO05D007857 2.2e-79 300.1 300 56.3
CSS0037524 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 3.7e-79 299.3 231 64.5
Migut.L01438 Erythranthe guttata HOM05D006231 ORTHO05D007857 6.3e-79 298.5 248 61.7
Sc11g0001330 Simmondsia chinensis HOM05D006231 ORTHO05D007857 8.3e-79 298.1 299 56.9
Hund25325 Selenicereus undatus HOM05D006231 ORTHO05D007857 4.5e-77 292.4 301 54.8
Lsat_1_v5_gn_8_158260 Lactuca sativa HOM05D006231 ORTHO05D007857 7.7e-77 291.6 255 62.4
TPR.G4354 Trifolium pratense HOM05D006231 ORTHO05D007857 7.7e-77 291.6 269 58.0
Glyma.02G032100 Glycine max HOM05D006231 ORTHO05D007857 1.0e-76 291.2 311 54.3
Sabra10G0068400 Salix brachista HOM05D006231 ORTHO05D007857 1.0e-76 291.2 334 49.4
AUR62005324 Chenopodium quinoa HOM05D006231 ORTHO05D007857 1.3e-76 290.8 289 55.7
Lj3A1049T58 Lonicera japonica HOM05D006231 ORTHO05D007857 3.8e-76 289.3 250 62.0
Rhsim12G0123300 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.8e-76 289.3 276 58.3
ECA233G1652 Erigeron canadensis HOM05D006231 ORTHO05D007857 8.6e-76 288.1 307 54.7
unitig_22.g6476 Utricularia gibba HOM05D006231 ORTHO05D007857 1.1e-75 287.7 261 59.8
Medtr5g035060 Medicago truncatula HOM05D006231 ORTHO05D007857 2.5e-75 286.6 303 55.1
AUR62013974 Chenopodium quinoa HOM05D006231 ORTHO05D007857 7.2e-75 285.0 341 50.7
HanXRQChr08g0208971 Helianthus annuus HOM05D006231 ORTHO05D007857 1.2e-74 284.3 298 55.4
EL10Ac6g13629 Beta vulgaris HOM05D006231 ORTHO05D007857 2.1e-74 283.5 312 53.2
Ah.03g132450 Amaranthus hybridus HOM05D006231 ORTHO05D007857 1.8e-73 280.4 226 63.7
DCAR_024529 Daucus carota HOM05D006231 ORTHO05D007857 2.3e-73 280.0 194 69.6
VMungo1215G3085 Vigna mungo HOM05D006231 ORTHO05D007857 3.4e-72 276.2 280 53.2
Sabra08G0111000 Salix brachista HOM05D006231 ORTHO05D007857 3.7e-71 272.7 200 69.5
Phvul.002G073400 Phaseolus vulgaris HOM05D006231 ORTHO05D007857 4.9e-71 272.3 273 54.6
CDE10G0954 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 2.7e-69 266.5 305 51.8
SGA_v2.0_scaffold166G38349 Striga asiatica HOM05D006231 ORTHO05D007857 1.1e-67 261.2 291 50.2
MBI15_g12952_MAGBIO Magnolia biondii HOM05D006231 ORTHO05D007857 9.8e-64 248.1 216 57.4
ATR1149G099 Amborella trichopoda HOM05D006231 ORTHO05D007857 7.3e-59 231.9 185 65.4
CDE10G0637 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 3.6e-58 229.6 187 63.1
SEGI_07841 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 4.7e-58 229.2 253 50.2
HPP92_010904 Vanilla planifolia HOM05D006231 ORTHO05D007857 6.8e-57 225.3 212 54.7
Solyc05g005890.2 Solanum lycopersicum HOM05D006231 ORTHO05D007857 5.8e-56 222.2 149 72.5
Medtr5g035040 Medicago truncatula HOM05D006231 ORTHO05D007857 1.9e-54 217.2 221 55.2
GSVIVG01020181001 Vitis vinifera HOM05D006231 ORTHO05D007857 6.0e-53 212.2 144 70.8
SEGI_36756 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 2.0e-48 197.2 213 50.2
Os04g0465500 Oryza sativa ssp. japonica HOM05D006231 ORTHO05D007857 4.9e-47 192.6 231 48.1
Zm00001eb424460 Zea mays HOM05D006231 ORTHO05D007857 1.9e-46 190.7 241 46.1
Psat2g109880 Pisum sativum HOM05D006231 ORTHO05D007857 7.8e-45 185.3 221 50.2
Pp3c2_6130 Physcomitrium patens HOM05D006231 ORTHO05D007857 1.8e-41 174.1 216 47.7
Pp3c2_6132 Physcomitrium patens HOM05D006231 ORTHO05D007857 1.8e-41 174.1 216 47.7
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 7.6e-40 168.7 213 44.6
Zm00001eb348680 Zea mays HOM05D006231 ORTHO05D007857 2.2e-39 167.2 231 44.2
SMO365G0079 Selaginella moellendorffii HOM05D006231 ORTHO05D007857 2.8e-34 150.2 195 43.6
Dinv31098 Davidia involucrata HOM05D006231 ORTHO05D007857 5.6e-27 125.9 90 68.9
Medtr5g035050 Medicago truncatula HOM05D006231 ORTHO05D007857 1.4e-25 121.3 84 71.4
AagrBONN_evm.TU.Sc2ySwM_368.2752 Anthoceros agrestis HOM05D006231 ORTHO05D007857 2.4e-25 120.6 177 42.4
CBR_g40430 Chara braunii HOM05D017800 ORTHO05D019665 2.6e-24 117.1 216 37.0
TAR622G0489 Trochodendron aralioides HOM05D006231 ORTHO05D007857 1.9e-14 84.3 75 61.3
PRCOL_00005055 Prasinoderma coloniale HOM05D006231 ORTHO05D007857 2.6e-08 63.9 163 28.2
Cre10.g464750 Chlamydomonas reinhardtii HOM05D006231 ORTHO05D007857 3.4e-08 63.5 238 22.7


User provided reference genes

Program Settings