Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G149200 Theobroma cacao HOM05D006835 ORTHO05D008587 2.6e-80 303.1 333 100.0
COL.COLO4_04808 Corchorus olitorius HOM05D006835 ORTHO05D008587 8.9e-73 278.1 333 95.2
Duzib132G0412 Durio zibethinus HOM05D006835 ORTHO05D008587 5.7e-72 275.4 333 92.8
Gorai.013G065400 Gossypium raimondii HOM05D006835 ORTHO05D008587 2.3e-68 263.5 333 93.4
Gohir.D13G058000 Gossypium hirsutum HOM05D006835 ORTHO05D008587 8.6e-68 261.5 333 93.4
Gohir.A13G063900 Gossypium hirsutum HOM05D006835 ORTHO05D008587 1.1e-67 261.2 333 92.8
QL11p057002 Quercus lobata HOM05D006835 ORTHO05D008587 6.4e-63 245.4 332 87.0
CiPaw.06G113200 Carya illinoinensis HOM05D006835 ORTHO05D008587 3.5e-61 239.6 330 72.4
Haze_01949 Corylus avellana HOM05D006835 ORTHO05D008587 7.8e-61 238.4 334 84.7
Dinv41853 Davidia involucrata HOM05D006835 ORTHO05D008587 1.8e-57 227.3 333 74.5
Atru.chr5.3592 Acer truncatum HOM05D006835 ORTHO05D008587 3.1e-57 226.5 328 88.1
Manes.15G113100 Manihot esculenta HOM05D006835 ORTHO05D008587 5.2e-57 225.7 330 83.0
Ciclev10028825m.g Citrus clementina HOM05D006835 ORTHO05D008587 1.5e-56 224.2 328 84.1
Potri.004G209400 Populus trichocarpa HOM05D006835 ORTHO05D008587 3.7e-55 219.5 334 82.6
ClCG02G003170 Citrullus lanatus HOM05D006835 ORTHO05D008587 5.4e-54 215.7 327 81.0
MELO3C015685.2 Cucumis melo HOM05D006835 ORTHO05D008587 5.4e-54 215.7 327 78.6
CsaV3_7G002240 Cucumis sativus L. HOM05D006835 ORTHO05D008587 5.4e-54 215.7 327 78.3
Prupe.8G183100 Prunus persica HOM05D006835 ORTHO05D008587 1.2e-53 214.5 328 85.7
Lalb_Chr09g0328551 Lupinus albus HOM05D006835 ORTHO05D008587 2.1e-53 213.8 327 83.8
Cpa.g.sc60.7 Carica papaya HOM05D006835 ORTHO05D008587 2.7e-53 213.4 329 84.2
Cc05_g09290 Coffea canephora HOM05D006835 ORTHO05D008587 2.7e-53 213.4 333 84.1
Rhsim12G0002300 Rhododendron simsii HOM05D006835 ORTHO05D008587 2.7e-53 213.4 324 84.9
Sabra04G0141200 Salix brachista HOM05D006835 ORTHO05D008587 2.7e-53 213.4 334 82.3
FAN27G3385 Fragaria x ananassa HOM05D006835 ORTHO05D008587 3.5e-53 213.0 329 85.1
GSVIVG01023845001 Vitis vinifera HOM05D006835 ORTHO05D008587 6.0e-53 212.2 329 86.0
RcHm_v2.0_Chr6g0281661 Rosa chinensis HOM05D006835 ORTHO05D008587 1.7e-52 210.7 328 84.5
CANSAT25G2962 Cannabis sativa HOM05D006835 ORTHO05D008587 2.3e-52 210.3 327 83.5
CANSAT25G1616 Cannabis sativa HOM05D006835 ORTHO05D008587 3.9e-52 209.5 327 83.2
Hma1.2p1_0332F.1_g127850 Hydrangea macrophylla HOM05D006835 ORTHO05D008587 3.9e-52 209.5 326 85.9
FAN24G3450 Fragaria x ananassa HOM05D006835 ORTHO05D008587 8.6e-52 208.4 329 84.5
Lj4g0005221 Lotus japonicus HOM05D006835 ORTHO05D008587 2.5e-51 206.8 328 82.6
Oeu034382.1 Olea europaea HOM05D006835 ORTHO05D008587 3.3e-51 206.5 326 83.1
Potri.009G170300 Populus trichocarpa HOM05D006835 ORTHO05D008587 3.3e-51 206.5 326 84.4
MBI15_g25631_MAGBIO Magnolia biondii HOM05D006835 ORTHO05D008587 5.6e-51 205.7 333 76.3
arahy.Tifrunner.gnm1.ann1.9A9DF4 Arachis hypogaea HOM05D006835 ORTHO05D008587 7.3e-51 205.3 329 83.9
arahy.Tifrunner.gnm1.ann1.N15UBW Arachis hypogaea HOM05D006835 ORTHO05D008587 7.3e-51 205.3 329 83.9
TWI75G0734 Tripterygium wilfordii HOM05D006835 ORTHO05D008587 7.3e-51 205.3 326 84.0
PGR042G3426 Punica granatum HOM05D006835 ORTHO05D008587 2.8e-50 203.4 327 78.0
Actinidia17982 Actinidia chinensis HOM05D006835 ORTHO05D008587 3.6e-50 203.0 326 82.8
FvH4_2g17170 Fragaria vesca HOM05D006835 ORTHO05D008587 4.7e-50 202.6 316 86.1
Nn6g31561 Nelumbo nucifera HOM05D006835 ORTHO05D008587 1.1e-49 201.4 333 84.1
MD10G1144800 Malus domestica HOM05D006835 ORTHO05D008587 1.4e-49 201.1 315 86.3
Psat7g128400 Pisum sativum HOM05D006835 ORTHO05D008587 1.8e-49 200.7 332 78.6
Sed0026152 Sechium edule HOM05D006835 ORTHO05D008587 1.8e-49 200.7 327 78.3
Ca_18740_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 6.8e-49 198.7 332 80.4
Ca_30877_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 6.8e-49 198.7 332 80.4
Sed0006636 Sechium edule HOM05D006835 ORTHO05D008587 1.2e-48 198.0 327 75.5
Atru.BG.81.p Acer truncatum HOM05D006835 ORTHO05D008587 2.0e-48 197.2 312 88.5
Glyma.13G141500 Glycine max HOM05D006835 ORTHO05D008587 2.0e-48 197.2 332 81.3
Lsat_1_v5_gn_1_20201 Lactuca sativa HOM05D006835 ORTHO05D008587 7.6e-48 195.3 327 81.0
Peaxi162Scf00078g00114 Petunia axillaris HOM05D006835 ORTHO05D008587 9.9e-48 194.9 323 82.0
Eucgr.H05012 Eucalyptus grandis HOM05D006835 ORTHO05D008587 1.3e-47 194.5 333 80.8
Medtr4g084630 Medicago truncatula HOM05D006835 ORTHO05D008587 1.7e-47 194.1 325 80.0
ECA247G0195 Erigeron canadensis HOM05D006835 ORTHO05D008587 1.1e-46 191.4 327 78.9
Ah.01g010510 Amaranthus hybridus HOM05D006835 ORTHO05D008587 1.4e-46 191.0 326 81.9
arahy.Tifrunner.gnm1.ann1.ATV9YP Arachis hypogaea HOM05D006835 ORTHO05D008587 1.4e-46 191.0 329 82.1
arahy.Tifrunner.gnm1.ann1.B8P5ZC Arachis hypogaea HOM05D006835 ORTHO05D008587 1.4e-46 191.0 329 82.1
MSTRG.1776 Avicennia marina HOM05D006835 ORTHO05D008587 1.6e-45 187.6 329 83.0
EL10Ac9g21569 Beta vulgaris HOM05D006835 ORTHO05D008587 1.6e-45 187.6 326 78.8
unitig_744.g24691 Utricularia gibba HOM05D006835 ORTHO05D008587 1.6e-45 187.6 322 79.8
Sopen11g019950 Solanum pennellii HOM05D006835 ORTHO05D008587 4.6e-45 186.0 323 80.8
Sc08g0001990 Simmondsia chinensis HOM05D006835 ORTHO05D008587 6.0e-45 185.7 327 78.0
PGSC0003DMG400023133 Solanum tuberosum HOM05D006835 ORTHO05D008587 7.8e-45 185.3 323 80.5
Migut.E01343 Erythranthe guttata HOM05D006835 ORTHO05D008587 1.0e-44 184.9 328 79.6
CAN.G430.3 Capsicum annuum HOM05D006835 ORTHO05D008587 1.7e-44 184.1 323 80.2
TPR.G31217 Trifolium pratense HOM05D006835 ORTHO05D008587 5.1e-44 182.6 373 65.7
PSO541G0957 Papaver somniferum HOM05D006835 ORTHO05D008587 8.6e-44 181.8 339 80.5
SalBow8G5127 Salvia bowleyana HOM05D006835 ORTHO05D008587 8.6e-44 181.8 318 78.9
Solyc11g044360.3 Solanum lycopersicum HOM05D006835 ORTHO05D008587 2.5e-43 180.3 315 81.3
Aqoxy6G03057 Aquilegia oxysepala HOM05D006835 ORTHO05D008587 3.3e-43 179.9 328 81.1
Phvul.007G148200 Phaseolus vulgaris HOM05D006835 ORTHO05D008587 4.3e-43 179.5 333 79.0
AUR62010216 Chenopodium quinoa HOM05D006835 ORTHO05D008587 1.2e-42 177.9 327 78.0
AUR62013212 Chenopodium quinoa HOM05D006835 ORTHO05D008587 1.2e-42 177.9 327 78.0
Hund06347 Selenicereus undatus HOM05D006835 ORTHO05D008587 5.2e-41 172.6 326 77.6
THA.LOC104806593 Tarenaya hassleriana HOM05D006835 ORTHO05D008587 2.6e-40 170.2 334 49.1
Lsat_1_v5_gn_8_70721 Lactuca sativa HOM05D006835 ORTHO05D008587 1.3e-39 167.9 309 81.6
DCAR_006210 Daucus carota HOM05D006835 ORTHO05D008587 1.7e-39 167.5 330 71.2
SGA_v2.0_scaffold144G35876 Striga asiatica HOM05D006835 ORTHO05D008587 1.7e-39 167.5 323 79.9
TPR.G38303 Trifolium pratense HOM05D006835 ORTHO05D008587 8.4e-39 165.2 333 73.9
ATR0605G237 Amborella trichopoda HOM05D006835 ORTHO05D008587 4.2e-38 162.9 325 71.1
Nitab4.5_0000079g0110 Nicotiana tabacum HOM05D006835 ORTHO05D008587 4.2e-38 162.9 323 80.5
Nitab4.5_0004387g0030 Nicotiana tabacum HOM05D006835 ORTHO05D008587 3.5e-37 159.8 323 79.9
CARHR293940 Cardamine hirsuta HOM05D006835 ORTHO05D008587 2.5e-35 153.7 320 68.8
Aa31LG6G16920 Aethionema arabicum HOM05D006835 ORTHO05D008587 3.3e-35 153.3 336 65.8
Sp7g37590 Schrenkiella parvula HOM05D006835 ORTHO05D008587 7.3e-35 152.1 322 68.0
MD05G1145000 Malus domestica HOM05D006835 ORTHO05D008587 1.6e-34 151.0 301 82.7
Carub.0007s0005 Capsella rubella HOM05D006835 ORTHO05D008587 2.8e-34 150.2 331 65.3
Glyma.10G054400 Glycine max HOM05D006835 ORTHO05D008587 3.6e-34 149.8 302 82.8
AL7G10060 Arabidopsis lyrata HOM05D006835 ORTHO05D008587 1.4e-33 147.9 321 66.7
AT4G38160 Arabidopsis thaliana HOM05D006835 ORTHO05D008587 1.8e-33 147.5 321 73.5
TAR381G0995 Trochodendron aralioides HOM05D006835 ORTHO05D008587 9.0e-33 145.2 90 78.9
Thhalv10004546m.g Eutrema salsugineum HOM05D006835 ORTHO05D008587 1.5e-32 144.4 321 67.6
CSS0014591 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 2.9e-31 140.2 306 78.1
ClCG02G010730 Citrullus lanatus HOM05D006835 ORTHO05D008587 3.8e-31 139.8 296 42.6
Ah.02g121760 Amaranthus hybridus HOM05D006835 ORTHO05D008587 2.7e-29 133.7 87 67.8
FAN15G1646 Fragaria x ananassa HOM05D006835 ORTHO05D008587 2.7e-29 133.7 80 80.0
C07p46880 Brassica napus HOM05D006835 ORTHO05D008587 1.3e-28 131.3 334 68.3
BolC7t45204H Brassica oleracea HOM05D006835 ORTHO05D008587 1.3e-28 131.3 334 68.3
A03p48790 Brassica napus HOM05D006835 ORTHO05D008587 1.7e-28 131.0 334 68.3
BraA03t13979Z Brassica rapa HOM05D006835 ORTHO05D008587 3.0e-28 130.2 334 68.3
CDE04G0383 Ceratophyllum demersum HOM05D006835 ORTHO05D008587 3.0e-28 130.2 316 54.7
VMungo1309G0603 Vigna mungo HOM05D006835 ORTHO05D008587 3.9e-28 129.8 286 83.6
SalBow3G3248 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.3e-23 114.8 278 79.5
vmacro17000 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 2.2e-23 114.0 323 45.2
Os08g0515800 Oryza sativa ssp. japonica HOM05D006835 ORTHO05D008587 4.9e-23 112.8 329 58.7
CSS0013930 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 3.2e-22 110.2 65 76.9
SalBow4G0758 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.6e-21 107.8 278 78.4
TAR381G1325 Trochodendron aralioides HOM05D006835 ORTHO05D008587 3.7e-18 96.7 59 74.6
SalBow8G1833 Salvia bowleyana HOM05D006835 ORTHO05D008587 4.0e-17 93.2 60 71.7
SEGI_34779 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 1.5e-16 91.3 60 63.3
HPP92_022026 Vanilla planifolia HOM05D006835 ORTHO05D008587 1.0e-15 88.6 61 65.6
AagrBONN_evm.TU.Sc2ySwM_344.3279 Anthoceros agrestis HOM05D006835 ORTHO05D008587 1.1e-11 75.1 86 45.3
Mapoly0015s0200 Marchantia polymorpha HOM05D006835 ORTHO05D008587 1.6e-10 71.2 93 43.0
SEGI_18890 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 5.3e-09 66.2 42 66.7
vmacro17002 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 9.0e-09 65.5 90 45.6
Actinidia20590 Actinidia chinensis HOM05D006835 ORTHO05D008587 1.2e-08 65.1 44 65.9
vmacro17159 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 1.5e-08 64.7 44 68.2
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 1.9e-06 57.8 61 41.0
LjContig00482g0022414 Lotus japonicus HOM05D005956 ORTHO05D007197 4.2e-06 56.6 61 42.6
PGR083G0114 Punica granatum HOM05D005956 ORTHO05D007197 4.2e-06 56.6 59 40.7
Pp3c18_18510 Physcomitrium patens HOM05D005956 ORTHO05D007197 5.5e-06 56.2 61 44.3
VMungo1080G0145 Vigna mungo HOM05D005956 ORTHO05D007197 5.5e-06 56.2 61 39.3
TPR.G21350 Trifolium pratense HOM05D005956 ORTHO05D007197 7.2e-06 55.8 61 39.3
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 9.3e-06 55.5 58 43.1


User provided reference genes

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