Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G116800 Theobroma cacao HOM05D006273 ORTHO05D007607 5.7e-181 637.5 330 100.0
Duzib248G0443 Durio zibethinus HOM05D006273 ORTHO05D007607 1.1e-144 516.9 338 83.4
Duzib132G0234 Durio zibethinus HOM05D006273 ORTHO05D007607 3.6e-143 511.9 330 83.0
Gorai.008G020400 Gossypium raimondii HOM05D006273 ORTHO05D007607 2.8e-135 485.7 335 79.1
Gohir.A12G019800 Gossypium hirsutum HOM05D006273 ORTHO05D007607 6.2e-135 484.6 335 78.8
Gohir.D12G020000 Gossypium hirsutum HOM05D006273 ORTHO05D007607 8.1e-135 484.2 335 78.8
COL.COLO4_32516 Corchorus olitorius HOM05D006273 ORTHO05D007607 1.5e-133 479.9 330 78.5
Dinv42237 Davidia involucrata HOM05D006273 ORTHO05D007607 3.7e-103 379.0 331 65.9
Manes.10G081700 Manihot esculenta HOM05D006273 ORTHO05D007607 1.9e-96 356.7 347 63.7
Potri.009G088600 Populus trichocarpa HOM05D006273 ORTHO05D007607 6.5e-92 341.7 334 60.8
Cfa004628 Carpinus fangiana HOM05D006273 ORTHO05D007607 4.6e-90 335.5 333 60.4
Cpa.g.sc106.50 Carica papaya HOM05D006273 ORTHO05D007607 3.3e-88 329.3 336 58.3
Prupe.8G144600 Prunus persica HOM05D006273 ORTHO05D007607 2.2e-87 326.6 337 59.1
MD05G1099900 Malus domestica HOM05D006273 ORTHO05D007607 4.1e-86 322.4 337 58.8
Hma1.2p1_1059F.1_g252960 Hydrangea macrophylla HOM05D006273 ORTHO05D007607 3.4e-85 319.3 336 57.4
Actinidia04385 Actinidia chinensis HOM05D002857 ORTHO05D007919 1.1e-83 314.3 337 57.0
CiPaw.05G017700 Carya illinoinensis HOM05D006273 ORTHO05D007607 3.6e-82 309.3 335 58.8
QL11p030642 Quercus lobata HOM05D006273 ORTHO05D007607 3.0e-81 306.2 337 57.6
Ciclev10028827m.g Citrus clementina HOM05D006273 ORTHO05D007607 1.8e-78 297.0 337 54.6
Sabra09G0068600 Salix brachista HOM05D006273 ORTHO05D007607 1.8e-78 297.0 392 50.5
Haze_10223 Corylus avellana HOM05D006273 ORTHO05D007607 1.0e-76 291.2 311 57.2
TWI23G0281 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 1.3e-76 290.8 333 54.7
Nn5g30577 Nelumbo nucifera HOM05D006273 ORTHO05D007607 1.7e-76 290.4 339 54.6
GSVIVG01037839001 Vitis vinifera HOM05D006273 ORTHO05D007607 2.2e-76 290.0 356 55.3
RcHm_v2.0_Chr6g0253781 Rosa chinensis HOM05D006273 ORTHO05D007607 2.3e-73 280.0 340 53.8
Cc02_g19850 Coffea canephora HOM05D006273 ORTHO05D007607 6.7e-73 278.5 338 52.7
Lj5A219G34 Lonicera japonica HOM05D006273 ORTHO05D007607 3.3e-72 276.2 351 52.1
FAN15G3526 Fragaria x ananassa HOM05D006273 ORTHO05D007607 2.8e-71 273.1 336 53.6
FAN24G1968 Fragaria x ananassa HOM05D006273 ORTHO05D007607 8.2e-71 271.6 339 53.1
FAN24G2779 Fragaria x ananassa HOM05D006273 ORTHO05D007607 8.2e-71 271.6 339 53.1
CSS0011953 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D007919 1.4e-70 270.8 314 54.5
FAN27G2995 Fragaria x ananassa HOM05D006273 ORTHO05D007607 2.0e-69 266.9 337 53.1
MSTRG.5316 Avicennia marina HOM05D006273 ORTHO05D007607 1.7e-68 263.8 344 49.4
ClCG10G010280 Citrullus lanatus HOM05D006273 ORTHO05D007607 5.0e-68 262.3 342 51.5
CANSAT25G0612 Cannabis sativa HOM05D006273 ORTHO05D007607 1.9e-67 260.4 340 51.2
CsaV3_4G000230 Cucumis sativus L. HOM05D006273 ORTHO05D007607 1.2e-66 257.7 344 51.7
PGR042G0373 Punica granatum HOM05D006273 ORTHO05D007607 2.7e-66 256.5 341 50.7
FAN20G1056 Fragaria x ananassa HOM05D006273 ORTHO05D007607 6.1e-66 255.4 331 52.0
MELO3C018010.2 Cucumis melo HOM05D006273 ORTHO05D007607 1.4e-65 254.2 341 51.0
FvH4_2g04340 Fragaria vesca HOM05D006273 ORTHO05D007607 1.1e-64 251.1 338 50.6
Oeu010445.1 Olea europaea HOM05D006273 ORTHO05D007607 1.7e-63 247.3 313 52.1
Nitab4.5_0008075g0050 Nicotiana tabacum HOM05D006273 ORTHO05D007607 6.3e-63 245.4 345 48.1
PGSC0003DMG400025745 Solanum tuberosum HOM05D006273 ORTHO05D007607 1.4e-62 244.2 344 47.7
TAR381G1192 Trochodendron aralioides HOM05D006273 ORTHO05D007607 1.8e-62 243.8 314 51.3
DCAR_001698 Daucus carota HOM05D006273 ORTHO05D007607 2.6e-61 240.0 342 47.4
SalBow3G1994 Salvia bowleyana HOM05D006273 ORTHO05D007607 2.5e-59 233.4 372 42.7
Rhsim05G0090800 Rhododendron simsii HOM05D002857 ORTHO05D007919 4.0e-57 226.1 369 44.7
Sopen01g049300 Solanum pennellii HOM05D006273 ORTHO05D007607 7.5e-56 221.9 337 46.9
Solyc01g107030.3 Solanum lycopersicum HOM05D006273 ORTHO05D007607 1.7e-55 220.7 337 46.6
Aqoxy6G02639 Aquilegia oxysepala HOM05D006273 ORTHO05D007607 6.3e-55 218.8 294 51.4
PSO541G6083 Papaver somniferum HOM05D006273 ORTHO05D007607 8.3e-55 218.4 337 48.7
TAR628G0174 Trochodendron aralioides HOM05D006273 ORTHO05D007607 7.0e-54 215.3 339 46.9
arahy.Tifrunner.gnm1.ann1.71AIDN Arachis hypogaea HOM05D006273 ORTHO05D007607 8.5e-52 208.4 341 44.0
Sed0011178 Sechium edule HOM05D006273 ORTHO05D007607 1.1e-51 208.0 344 43.9
CSS0045592 Camellia sinensis var. sinensis HOM05D006273 ORTHO05D007607 1.5e-51 207.6 250 54.0
CAN.G606.58 Capsicum annuum HOM05D006273 ORTHO05D007607 1.2e-50 204.5 316 42.7
vmacro19532 Vaccinium macrocarpon HOM05D006273 ORTHO05D007607 1.0e-49 201.4 406 39.9
Lj5g0005423 Lotus japonicus HOM05D006273 ORTHO05D007607 2.6e-48 196.8 348 45.4
PSO675G1322 Papaver somniferum HOM05D006273 ORTHO05D007607 9.8e-48 194.9 343 44.9
arahy.Tifrunner.gnm1.ann1.P501AI Arachis hypogaea HOM05D006273 ORTHO05D007607 6.3e-47 192.2 358 41.3
THA.LOC104815220 Tarenaya hassleriana HOM05D006273 ORTHO05D007607 6.3e-47 192.2 339 44.5
Sc18g0007420 Simmondsia chinensis HOM05D006273 ORTHO05D007607 1.4e-46 191.0 326 46.0
Eucgr.G01219 Eucalyptus grandis HOM05D006273 ORTHO05D007607 5.4e-46 189.1 281 49.5
Glyma.20G134100 Glycine max HOM05D006273 ORTHO05D007607 2.7e-45 186.8 328 43.6
Nn1g04569 Nelumbo nucifera HOM05D006273 ORTHO05D007607 3.5e-45 186.4 343 42.6
Hund24173 Selenicereus undatus HOM05D006273 ORTHO05D007607 1.0e-44 184.9 294 47.3
Peaxi162Scf00016g02848 Petunia axillaris HOM05D006273 ORTHO05D007607 5.0e-44 182.6 316 41.1
Sc18g0007460 Simmondsia chinensis HOM05D006273 ORTHO05D007607 5.5e-43 179.1 326 45.1
Glyma.10G257100 Glycine max HOM05D006273 ORTHO05D007607 2.8e-42 176.8 326 43.3
Phvul.002G051700 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 3.6e-42 176.4 326 41.4
HanXRQChr10g0292221 Helianthus annuus HOM05D006273 ORTHO05D007607 3.0e-41 173.3 335 41.8
EL10Ac9g22769 Beta vulgaris HOM05D006273 ORTHO05D007607 7.5e-40 168.7 338 38.2
VMungo0720G2467 Vigna mungo HOM05D006273 ORTHO05D007607 7.5e-40 168.7 336 42.6
VMungo1215G3137 Vigna mungo HOM05D006273 ORTHO05D007607 7.5e-40 168.7 327 41.9
Thhalv10021227m.g Eutrema salsugineum HOM05D006273 ORTHO05D007607 1.3e-39 167.9 336 43.8
unitig_21.g20718 Utricularia gibba HOM05D002857 ORTHO05D007919 1.3e-39 167.9 309 41.1
SGA_v2.0_scaffold225G43040 Striga asiatica HOM05D006273 ORTHO05D007607 2.9e-39 166.8 319 41.4
CARHR095110 Cardamine hirsuta HOM05D006273 ORTHO05D007607 4.9e-39 166.0 338 40.2
Medtr1g106210 Medicago truncatula HOM05D006273 ORTHO05D007607 1.1e-38 164.9 333 40.8
TPR.G27136 Trifolium pratense HOM05D006273 ORTHO05D007607 5.4e-38 162.5 329 40.7
Lsat_1_v5_gn_5_114180 Lactuca sativa HOM05D006273 ORTHO05D007607 1.6e-37 161.0 339 41.6
Migut.N01140 Erythranthe guttata HOM05D006273 ORTHO05D007607 1.0e-36 158.3 333 39.3
Phvul.007G045300 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 1.7e-36 157.5 338 39.9
Psat6g214920 Pisum sativum HOM05D006273 ORTHO05D007607 6.6e-36 155.6 221 46.2
C05p45180 Brassica napus HOM05D006273 ORTHO05D007607 1.1e-35 154.8 331 41.4
HPP92_007764 Vanilla planifolia HOM05D006273 ORTHO05D007607 1.9e-35 154.1 353 39.7
ECA234G1150 Erigeron canadensis HOM05D006273 ORTHO05D007607 4.3e-35 152.9 336 41.4
Carub.0003s1952 Capsella rubella HOM05D006273 ORTHO05D007607 5.6e-35 152.5 336 41.1
Sp3g17690 Schrenkiella parvula HOM05D006273 ORTHO05D007607 5.6e-35 152.5 339 41.6
ATR1153G071 Amborella trichopoda HOM05D006273 ORTHO05D007607 2.1e-34 150.6 347 39.2
Lalb_Chr06g0165121 Lupinus albus HOM05D006273 ORTHO05D007607 2.1e-34 150.6 327 39.1
Ah.01g002130 Amaranthus hybridus HOM05D006273 ORTHO05D007607 3.6e-34 149.8 297 38.7
Potri.001G295000 Populus trichocarpa HOM05D006273 ORTHO05D007607 2.0e-32 144.1 152 56.6
Atru.chr5.2357 Acer truncatum HOM05D006273 ORTHO05D007607 2.6e-32 143.7 262 44.7
BcaB06g26035 Brassica carinata HOM05D006273 ORTHO05D007607 3.4e-32 143.3 336 40.8
Glyma.01G242500 Glycine max HOM05D006273 ORTHO05D007607 7.5e-32 142.1 324 38.0
Aa31LG8G6430 Aethionema arabicum HOM05D006273 ORTHO05D007607 1.3e-31 141.4 312 39.7
BcaC05g28438 Brassica carinata HOM05D006273 ORTHO05D007607 2.9e-31 140.2 331 39.9
Lj1g0018578 Lotus japonicus HOM05D006273 ORTHO05D007607 1.1e-30 138.3 321 36.1
BolC5t33244H Brassica oleracea HOM05D000470 ORTHO05D000348 3.2e-30 136.7 333 39.3
Hund24138 Selenicereus undatus HOM05D006273 ORTHO05D007607 4.6e-29 132.9 210 46.7
AT3G19650 Arabidopsis thaliana HOM05D006273 ORTHO05D007607 6.0e-29 132.5 336 38.7
Ca_11032_v3 Cicer arietinum L. HOM05D006273 ORTHO05D007607 1.7e-28 131.0 190 45.3
Glyma.11G001800 Glycine max HOM05D006273 ORTHO05D007607 8.6e-28 128.6 331 37.2
Nitab4.5_0001105g0020 Nicotiana tabacum HOM05D006273 ORTHO05D007607 3.6e-26 123.2 174 45.4
Oeu037282.1 Olea europaea HOM05D006273 ORTHO05D007607 3.1e-25 120.2 252 38.5
AUR62017546 Chenopodium quinoa HOM05D006273 ORTHO05D007607 1.5e-24 117.9 295 36.3
FvH4_2g03741 Fragaria vesca HOM05D006273 ORTHO05D007607 9.8e-24 115.2 127 59.8
TWI59G0086 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 1.7e-23 114.4 198 39.9
Zm00001eb007690 Zea mays HOM05D006273 ORTHO05D007607 1.4e-22 111.3 345 33.3
AUR62025214 Chenopodium quinoa HOM05D000052 ORTHO05D007607 7.1e-22 109.0 199 36.7
Os03g0203000 Oryza sativa ssp. japonica HOM05D006273 ORTHO05D007607 7.1e-22 109.0 299 32.8
CDE04G2504 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 8.6e-20 102.1 316 32.3
SHI05153 Sapria himalayana HOM05D006273 ORTHO05D007607 8.6e-20 102.1 322 36.0
CDE02G4649 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 1.1e-19 101.7 327 33.0
AUR62044228 Chenopodium quinoa HOM05D006273 ORTHO05D007607 7.3e-19 99.0 203 38.4
AL3G33090 Arabidopsis lyrata HOM05D006273 ORTHO05D007607 3.6e-18 96.7 333 35.1
Actinidia00372 Actinidia chinensis HOM05D006273 ORTHO05D007607 2.9e-15 87.0 106 52.8
Dinv15806 Davidia involucrata HOM05D006273 ORTHO05D007607 6.4e-15 85.9 71 70.4
TPR.G8308 Trifolium pratense HOM05D006273 ORTHO05D007607 5.4e-14 82.8 262 33.2
Aqoxy6G02626 Aquilegia oxysepala HOM05D002857 ORTHO05D007919 1.1e-11 75.1 259 31.7
Actinidia27988 Actinidia chinensis HOM05D006273 ORTHO05D007607 1.5e-08 64.7 48 77.1
SEGI_25142 Sequoiadendron giganteum HOM05D006273 ORTHO05D007607 2.6e-08 63.9 234 30.3
C01p44480 Brassica napus HOM05D006273 ORTHO05D007607 7.6e-08 62.4 48 66.7


User provided reference genes

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