Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 0.0e+00 1466.1 742 100.0
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 2.6e-306 1055.0 743 74.7
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 3.0e-299 1031.6 745 72.9
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 3.2e-288 995.0 743 69.7
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 5.8e-282 974.2 744 69.8
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 1.9e-280 969.1 744 69.2
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.9e-179 633.6 481 69.4
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 1.6e-159 567.4 749 46.1
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 4.7e-159 565.8 747 48.1
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 2.4e-158 563.5 772 45.5
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 3.4e-157 559.7 746 46.6
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 4.9e-148 529.3 741 46.8
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 2.1e-143 513.8 799 40.3
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 9.0e-142 508.4 751 43.0
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 1.7e-132 477.6 754 39.9
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.3e-129 468.0 761 41.4
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.8e-126 457.6 781 40.7
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 2.5e-123 447.2 775 39.2
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.0e-121 441.8 749 40.2
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 7.4e-120 435.6 764 39.5
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 1.1e-118 431.8 764 37.6
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 1.4e-118 431.4 761 41.3
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 5.3e-118 429.5 723 41.1
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 7.2e-115 419.1 746 40.3
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 3.6e-114 416.8 754 36.6
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 4.6e-114 416.4 736 39.9
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 2.0e-112 411.0 722 39.2
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 5.7e-112 409.5 775 37.7
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 5.3e-110 402.9 392 54.3
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 3.4e-109 400.2 796 35.8
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 5.0e-108 396.4 751 38.9
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 9.4e-107 392.1 755 38.5
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 2.7e-106 390.6 751 36.6
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 3.6e-106 390.2 744 37.1
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 1.4e-105 388.3 748 39.3
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 1.2e-101 375.2 751 36.2
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 3.5e-101 373.6 749 37.5
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.7e-95 353.6 735 37.3
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.6e-93 348.2 733 37.1
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.0e-92 345.5 735 36.9
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 2.5e-91 340.9 753 36.3
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 9.4e-91 339.0 745 36.0
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 4.1e-86 323.6 745 34.8
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 3.5e-85 320.5 511 42.9
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 3.8e-84 317.0 762 34.4
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 7.2e-83 312.8 604 37.6
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 8.0e-82 309.3 748 34.2
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 1.2e-80 305.4 761 33.5
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 1.2e-80 305.4 772 36.5
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.5e-80 305.1 811 31.6
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 4.5e-77 293.5 767 31.6
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 4.5e-77 293.5 759 32.1
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 1.0e-76 292.4 750 33.5
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 2.9e-76 290.8 749 31.8
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 5.0e-76 290.0 762 32.7
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 9.5e-75 285.8 753 31.1
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 1.2e-74 285.4 763 31.8
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 1.6e-74 285.0 750 32.7
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 2.0e-72 278.1 761 33.1
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.4e-70 271.9 517 36.4
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 1.4e-70 271.9 587 34.4
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 2.3e-68 264.6 464 38.4
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 1.5e-67 261.9 751 32.4
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 2.5e-67 261.2 751 31.4
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 3.3e-67 260.8 518 35.9
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 4.3e-67 260.4 756 31.1
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 8.0e-66 256.1 467 35.1
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 5.2e-65 253.4 407 41.0
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 6.8e-65 253.1 756 30.8
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 1.7e-63 248.4 633 31.8
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 5.4e-62 243.4 792 28.8
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 3.3e-59 234.2 478 33.1
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.6e-58 231.9 447 35.6
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 4.7e-58 230.3 450 36.0
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 1.1e-57 229.2 470 37.0
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 1.4e-57 228.8 569 33.4
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 9.2e-54 216.1 392 38.8
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.0e-52 212.6 758 29.9
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 2.1e-50 204.9 521 30.3
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.1e-49 202.6 401 35.7
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 2.2e-47 194.9 633 29.9
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 1.6e-45 188.7 326 39.9
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.3e-44 185.7 399 34.1
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.7e-44 185.3 494 31.4
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 5.1e-44 183.7 442 33.3
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 2.1e-42 178.3 456 33.6
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 1.4e-41 175.6 689 28.6
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 1.5e-40 172.2 516 31.0
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 6.4e-39 166.8 236 41.9
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 7.1e-38 163.3 514 30.7
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.6e-37 162.2 223 40.8
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.3e-36 159.1 417 31.4
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 2.1e-34 151.8 596 26.3
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 6.2e-34 150.2 368 33.4
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 1.8e-33 148.7 356 36.2
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 9.9e-32 142.9 222 40.1
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.3e-31 142.5 352 35.8
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 2.2e-31 141.7 322 35.1
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 3.8e-31 141.0 397 32.2
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 4.9e-31 140.6 232 39.2
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 6.4e-31 140.2 506 29.2
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 2.4e-30 138.3 355 33.2
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 3.2e-30 137.9 238 39.1
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 3.5e-29 134.4 400 31.8
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 7.9e-29 133.3 310 31.6
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 7.9e-29 133.3 310 31.3
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 7.3e-27 126.7 350 32.3
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 1.3e-26 125.9 351 33.0
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 2.6e-24 118.2 399 30.3
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 2.6e-24 118.2 399 30.3
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 3.4e-24 117.9 399 29.6
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 5.8e-24 117.1 396 29.8
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 1.3e-23 115.9 346 31.8
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.3e-23 115.9 248 31.9
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 1.9e-22 112.1 399 29.1
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 1.9e-22 112.1 399 29.1
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 3.5e-21 107.8 345 31.3
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 3.5e-21 107.8 345 31.3
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 3.5e-21 107.8 345 31.3
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 5.6e-19 100.5 204 34.8
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.6e-18 99.0 101 45.5
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 2.1e-18 98.6 231 34.6
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 1.3e-15 89.4 464 26.9
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 6.5e-15 87.0 261 29.9
Zm00001eb295010 Zea mays HOM05D024721 ORTHO05D025980 1.1e-14 86.3 175 33.7
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 9.3e-14 83.2 353 30.0
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 8.7e-12 76.6 56 66.1
Os05g0552100 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 2.5e-11 75.1 172 33.1
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 2.5e-11 75.1 326 27.6
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 7.4e-11 73.6 201 30.3
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 9.6e-11 73.2 338 26.3
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 9.6e-11 73.2 338 26.3
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 2.1e-10 72.0 275 29.5
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 4.1e-09 67.8 220 31.4
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 1.5e-08 65.9 229 30.1
MBI16_g35576_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 3.4e-08 64.7 77 42.9
Zm00001eb342970 Zea mays HOM05D024721 ORTHO05D025980 5.9e-08 63.9 172 30.2
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 7.6e-08 63.5 83 39.8
ATR0568G035 Amborella trichopoda HOM05D007001 ORTHO05D005587 2.9e-07 61.6 292 24.3
HPP92_020281 Vanilla planifolia HOM05D007001 ORTHO05D005587 7.2e-06 57.0 83 37.3


User provided reference genes

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