Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 1.8e-216 755.7 422 100.0
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 1.1e-147 527.3 450 69.1
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 5.8e-146 521.5 450 67.1
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 6.4e-145 518.1 452 67.7
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 1.2e-143 513.8 450 67.8
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 2.7e-143 512.7 452 67.3
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 3.5e-143 512.3 449 67.5
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 9.6e-141 504.2 448 67.2
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 3.7e-140 502.3 451 65.4
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 3.7e-140 502.3 451 65.4
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 4.8e-140 501.9 467 63.8
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 6.2e-140 501.5 450 66.0
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 8.2e-140 501.1 451 65.9
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 1.4e-139 500.4 450 65.8
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 2.0e-138 496.5 448 67.4
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 5.8e-138 495.0 448 67.2
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 2.9e-137 492.7 450 66.4
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 3.8e-137 492.3 450 66.4
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 1.2e-135 487.3 450 65.6
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 3.9e-134 482.3 452 63.5
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.8e-131 473.4 450 64.0
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 2.4e-131 473.0 450 63.8
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.1e-131 472.6 450 63.8
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 3.1e-131 472.6 450 62.9
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 9.0e-131 471.1 439 66.3
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 1.2e-130 470.7 456 62.9
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 1.2e-130 470.7 450 62.4
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 2.6e-130 469.5 448 64.1
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 2.6e-130 469.5 427 65.1
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 5.9e-130 468.4 450 62.9
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 7.6e-130 468.0 450 63.6
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.0e-129 467.6 450 63.8
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 3.8e-129 465.7 441 62.8
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 3.2e-128 462.6 438 62.3
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 5.5e-128 461.8 450 62.9
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 9.3e-128 461.1 425 66.8
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 1.2e-127 460.7 450 62.7
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 3.6e-127 459.1 450 61.6
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 2.3e-126 456.4 448 61.8
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 3.0e-126 456.1 452 62.8
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 5.1e-126 455.3 452 60.8
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 2.5e-125 453.0 450 62.0
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 7.4e-125 451.4 457 60.6
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 1.3e-124 450.7 452 60.8
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 4.8e-124 448.7 452 61.1
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 8.2e-124 448.0 450 61.8
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.1e-123 447.6 456 62.1
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.4e-123 447.2 438 61.6
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.4e-123 447.2 450 59.1
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.4e-123 447.2 448 59.8
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 2.4e-123 446.4 450 59.1
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 2.4e-123 446.4 450 60.4
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 3.1e-123 446.0 447 59.5
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 4.1e-123 445.7 447 60.6
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 5.3e-123 445.3 447 60.0
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 1.2e-122 444.1 452 63.1
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 1.2e-122 444.1 450 58.0
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 1.2e-122 444.1 448 61.6
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 1.2e-122 444.1 450 60.0
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 2.6e-122 443.0 448 62.1
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 3.4e-122 442.6 451 63.0
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 1.3e-121 440.7 442 59.7
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 5.0e-121 438.7 455 59.6
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 6.5e-121 438.3 452 62.8
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 3.2e-120 436.0 453 59.6
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 2.1e-119 433.3 456 58.1
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 2.7e-119 433.0 446 59.9
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 4.7e-119 432.2 452 61.1
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 4.7e-119 432.2 467 60.4
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 7.9e-119 431.4 468 56.6
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 1.0e-118 431.0 445 57.5
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 1.4e-118 430.6 451 58.5
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 2.3e-118 429.9 453 58.9
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 6.7e-118 428.3 448 60.5
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 8.8e-118 427.9 480 57.5
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 8.8e-118 427.9 452 58.2
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 1.1e-117 427.6 452 61.5
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 1.1e-117 427.6 457 57.1
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 3.3e-117 426.0 452 58.4
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 5.7e-117 425.2 457 57.5
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 1.8e-115 420.2 448 58.5
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 7.0e-115 418.3 439 59.7
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 7.0e-115 418.3 439 59.7
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 1.2e-114 417.5 452 59.7
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 1.5e-114 417.2 373 63.3
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 8.5e-113 411.4 431 60.3
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 3.2e-112 409.5 448 59.4
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 4.2e-112 409.1 451 58.5
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 1.6e-111 407.1 448 59.4
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 1.8e-110 403.7 453 57.8
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 5.2e-110 402.1 459 56.0
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 4.1e-107 392.5 452 56.4
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 7.0e-107 391.7 365 65.5
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.7e-106 388.3 391 61.6
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 1.4e-102 377.5 447 53.2
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 3.3e-101 372.9 410 55.9
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 4.1e-99 365.9 425 56.0
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 1.4e-94 350.9 430 53.3
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 2.3e-94 350.1 327 63.6
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 4.4e-93 345.9 404 53.7
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 2.2e-92 343.6 368 56.2
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.3e-92 341.7 354 61.3
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 1.0e-89 334.7 398 54.5
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 3.7e-84 316.2 371 54.7
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 2.3e-81 307.0 461 45.1
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 2.8e-79 300.1 449 46.5
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 1.5e-77 294.3 282 61.3
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.4e-75 287.7 403 48.6
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.4e-75 287.7 273 61.9
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 3.6e-71 273.1 230 73.0
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 1.1e-70 271.6 471 42.7
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 3.1e-70 270.0 358 50.3
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 2.8e-63 246.9 354 51.4
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 4.4e-61 239.6 277 58.1
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 7.5e-61 238.8 362 50.0
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 3.4e-53 213.4 240 56.7
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 1.9e-51 207.6 209 57.4
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 5.4e-51 206.1 205 63.4
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 4.3e-48 196.4 222 60.8
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 9.6e-48 195.3 375 38.4
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 1.8e-46 191.0 441 36.5
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.9e-46 189.1 325 43.4
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 1.5e-45 188.0 361 40.2
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 6.6e-41 172.6 153 64.1
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 3.3e-40 170.2 179 55.9
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.6e-40 168.7 201 53.2
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 3.6e-39 166.8 257 47.1
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 1.4e-38 164.9 463 33.5
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 2.8e-31 140.6 161 52.8
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 4.2e-27 126.7 134 55.2
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.0e-26 122.9 176 46.6
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 7.9e-26 122.5 128 60.9
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 6.7e-25 119.4 199 46.7
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 7.4e-24 115.9 119 62.2
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 5.5e-19 99.8 67 82.1
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 3.9e-17 93.6 111 57.7
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 9.7e-16 89.0 62 75.8
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 2.6e-13 80.9 95 57.9
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 1.3e-12 78.6 190 38.9
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 3.2e-11 73.9 79 58.2
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 2.1e-10 71.2 133 44.4
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 4.1e-06 57.0 37 75.7


User provided reference genes

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