Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 1.0e-179 633.3 319 100.0
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 1.8e-139 499.6 322 75.8
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 6.8e-139 497.7 321 75.7
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 8.9e-139 497.3 322 75.8
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 7.5e-138 494.2 324 76.2
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 9.8e-138 493.8 321 75.1
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.3e-137 493.4 324 75.6
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.3e-137 493.4 322 74.5
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.7e-137 491.9 321 73.5
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 4.9e-137 491.5 323 74.6
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 4.1e-136 488.4 323 74.0
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 2.1e-135 486.1 325 72.9
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 2.7e-135 485.7 324 74.4
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 4.6e-135 485.0 321 72.0
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 6.0e-135 484.6 324 74.7
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 6.0e-135 484.6 324 75.0
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 1.3e-134 483.4 324 74.4
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 2.3e-134 482.6 324 73.8
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 2.3e-134 482.6 323 72.8
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 3.0e-134 482.3 322 74.2
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 6.6e-134 481.1 323 71.5
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 6.6e-134 481.1 319 73.7
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 6.6e-134 481.1 322 73.9
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.5e-133 479.2 322 73.9
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.3e-133 478.8 321 71.3
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 3.3e-133 478.8 325 72.3
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 9.5e-133 477.2 332 71.4
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 9.5e-133 477.2 324 73.5
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 1.1e-131 473.8 322 71.7
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 1.8e-131 473.0 322 71.7
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.3e-131 472.6 326 72.7
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 4.0e-131 471.9 324 72.5
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 6.8e-131 471.1 325 71.7
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 6.8e-131 471.1 325 71.7
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 1.2e-130 470.3 322 71.1
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 4.4e-130 468.4 322 71.1
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 4.4e-130 468.4 323 71.5
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 5.8e-130 468.0 326 72.1
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 7.6e-130 467.6 325 71.1
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 7.6e-130 467.6 322 71.7
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.3e-129 466.8 326 72.4
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 2.2e-129 466.1 321 69.2
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 2.2e-129 466.1 324 70.7
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 2.9e-129 465.7 322 70.5
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 4.9e-129 464.9 319 71.2
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 6.4e-129 464.5 320 70.6
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 8.3e-129 464.2 323 70.6
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 8.3e-129 464.2 326 70.9
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 1.9e-128 463.0 326 70.9
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 2.4e-128 462.6 320 70.6
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 3.2e-128 462.2 322 70.2
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 7.1e-128 461.1 326 69.6
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 9.2e-128 460.7 322 70.8
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.2e-127 460.3 327 71.3
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 1.2e-127 460.3 322 70.2
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 3.5e-127 458.8 370 64.9
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 4.6e-127 458.4 322 68.0
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 4.6e-127 458.4 324 70.1
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 6.0e-127 458.0 324 70.7
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.7e-126 456.4 323 69.0
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.7e-126 456.4 321 70.7
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 5.1e-126 454.9 322 69.3
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 2.5e-125 452.6 318 68.9
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 9.6e-125 450.7 324 70.7
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.6e-124 448.7 321 68.2
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 8.1e-124 447.6 321 68.2
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 8.1e-124 447.6 322 67.7
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 1.8e-123 446.4 322 67.7
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 1.8e-123 446.4 319 68.0
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 3.1e-123 445.7 307 70.0
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 4.0e-123 445.3 323 69.0
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 4.0e-123 445.3 329 68.7
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.2e-122 443.7 321 67.3
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 2.0e-122 443.0 318 66.0
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 3.4e-122 442.2 327 69.7
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 8.4e-121 437.6 319 67.7
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 9.3e-120 434.1 326 68.1
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 1.6e-119 433.3 320 66.2
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 2.7e-119 432.6 326 66.6
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 3.5e-119 432.2 326 66.6
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 4.6e-119 431.8 324 66.4
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 6.0e-119 431.4 326 66.9
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 6.0e-119 431.4 326 65.6
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 1.3e-118 430.3 326 66.0
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 1.7e-118 429.9 322 65.2
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 8.7e-118 427.6 326 66.6
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 2.5e-117 426.0 326 66.0
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 2.5e-117 426.0 322 65.5
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 3.3e-117 425.6 320 65.9
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 5.6e-117 424.9 323 65.6
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 9.6e-117 424.1 323 65.3
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 1.6e-116 423.3 320 65.9
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 1.6e-116 423.3 326 66.0
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 2.8e-116 422.5 322 65.2
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 6.2e-116 421.4 320 65.6
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 2.4e-115 419.5 321 66.0
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 2.4e-115 419.5 323 63.2
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.5e-114 416.8 320 65.6
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 2.2e-113 412.9 305 67.5
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 8.4e-113 411.0 318 65.4
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.6e-111 406.8 303 65.0
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 2.1e-111 406.4 277 73.3
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 2.7e-111 406.0 326 64.4
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 1.6e-108 396.7 264 73.9
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 1.8e-107 393.3 414 55.3
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 2.2e-105 386.3 323 60.7
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 2.9e-105 386.0 294 66.0
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.4e-104 382.9 317 60.6
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 1.0e-102 377.5 323 59.1
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 6.7e-102 374.8 324 60.2
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.5e-101 373.6 286 65.0
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 4.8e-100 368.6 372 54.3
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 6.2e-100 368.2 256 72.3
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 6.2e-100 368.2 323 61.0
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 5.8e-98 361.7 323 59.1
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 5.8e-98 361.7 541 40.9
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 1.0e-97 360.9 287 63.4
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 4.3e-93 345.5 685 35.0
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.1e-91 340.9 319 56.4
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 2.6e-90 336.3 263 62.4
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 2.2e-89 333.2 220 72.3
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 2.9e-89 332.8 269 62.8
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 4.2e-88 328.9 302 52.6
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 2.6e-82 309.7 310 48.7
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.9e-80 303.5 310 49.0
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 7.2e-80 301.6 230 65.7
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.8e-75 287.0 256 58.6
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 4.1e-75 285.8 306 48.7
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.7e-73 280.4 202 69.3
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.4e-72 277.3 177 76.8
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 1.1e-64 251.1 221 58.4
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 6.3e-52 208.8 295 37.6
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 9.8e-45 184.9 187 46.5
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 1.0e-38 164.9 96 84.4
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 3.2e-35 153.3 99 72.7
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 4.7e-31 139.4 99 68.7
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.7e-28 131.0 93 63.4
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 4.9e-28 129.4 93 63.4
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 7.0e-27 125.6 326 28.2
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 3.0e-25 120.2 75 69.3
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 2.8e-23 113.6 121 52.9
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 3.6e-23 113.2 86 69.8
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 2.0e-21 107.5 88 62.5
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 1.2e-18 98.2 80 60.0
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 5.6e-16 89.4 64 67.2
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 2.1e-10 70.9 61 63.9
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.7e-10 70.5 56 58.9
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 6.0e-10 69.3 43 72.1
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 3.0e-09 67.0 42 78.6
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 3.0e-09 67.0 42 78.6
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 3.0e-09 67.0 42 78.6
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 4.0e-06 56.6 69 39.1


User provided reference genes

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