Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 8.9e-143 511.9 814 100.0
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 1.5e-73 282.0 205 71.2
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 1.2e-43 182.6 202 49.5
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 4.9e-40 170.6 201 47.8
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 6.4e-40 170.2 204 44.6
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 6.4e-40 170.2 208 44.7
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 6.4e-40 170.2 204 45.6
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 7.0e-39 166.8 208 44.2
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 1.3e-37 162.5 208 43.3
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 1.7e-37 162.2 209 43.5
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 3.0e-37 161.4 169 48.5
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 1.1e-36 159.5 204 46.6
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 1.5e-36 159.1 169 50.9
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 1.9e-36 158.7 169 47.9
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 2.5e-36 158.3 169 47.3
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 4.3e-36 157.5 209 41.6
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.2e-35 156.0 169 47.3
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 2.8e-35 154.8 155 49.0
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 3.1e-34 151.4 161 46.6
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 1.2e-33 149.4 203 40.9
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 1.5e-33 149.1 208 41.3
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 2.6e-33 148.3 196 44.9
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 2.6e-33 148.3 169 47.9
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 2.2e-32 145.2 159 45.3
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 1.1e-31 142.9 212 42.0
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 1.1e-31 142.9 203 40.4
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 2.4e-31 141.7 213 41.8
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 4.1e-31 141.0 209 38.3
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 2.1e-30 138.7 203 41.9
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 1.3e-29 136.0 207 39.1
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 1.5e-28 132.5 203 36.5
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 1.9e-28 132.1 215 37.2
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 1.9e-28 132.1 215 39.1
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 3.3e-28 131.3 141 46.8
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 9.5e-28 129.8 139 45.3
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 4.7e-27 127.5 193 35.2
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 6.2e-27 127.1 193 35.2
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 1.1e-26 126.3 191 41.9
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 1.4e-26 125.9 177 40.1
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 6.8e-26 123.6 153 41.8
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 8.9e-26 123.2 152 42.8
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 1.2e-25 122.9 153 41.8
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 1.2e-25 122.9 147 42.9
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 1.2e-25 122.9 178 41.0
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 2.0e-25 122.1 188 37.8
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.0e-25 122.1 150 42.0
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 2.0e-25 122.1 161 43.5
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 3.4e-25 121.3 140 47.1
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 4.4e-25 120.9 169 39.6
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 4.4e-25 120.9 137 44.5
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 5.8e-25 120.6 155 44.5
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 7.5e-25 120.2 140 47.1
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 7.5e-25 120.2 183 38.3
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 9.9e-25 119.8 144 40.3
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 9.9e-25 119.8 208 35.6
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 9.9e-25 119.8 197 37.1
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 1.3e-24 119.4 169 39.1
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 1.7e-24 119.0 156 37.8
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 1.7e-24 119.0 187 39.6
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 3.7e-24 117.9 234 35.0
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 4.9e-24 117.5 143 42.0
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 6.4e-24 117.1 148 43.9
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 1.1e-23 116.3 203 34.0
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 1.1e-23 116.3 173 37.6
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 1.1e-23 116.3 141 45.4
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 1.9e-23 115.5 178 37.1
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 2.4e-23 115.2 144 41.7
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 2.4e-23 115.2 175 38.9
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 7.1e-23 113.6 210 33.8
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 9.2e-23 113.2 212 36.3
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 9.2e-23 113.2 192 35.4
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 2.1e-22 112.1 197 35.0
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 2.7e-22 111.7 197 35.5
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 2.7e-22 111.7 141 41.1
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 2.7e-22 111.7 173 38.7
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 4.6e-22 110.9 172 36.6
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 4.6e-22 110.9 200 36.0
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 7.8e-22 110.2 201 33.3
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 1.3e-21 109.4 151 37.1
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 5.1e-21 107.5 163 38.7
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 1.9e-20 105.5 192 33.9
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 1.9e-20 105.5 194 34.0
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 3.3e-20 104.8 139 38.1
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 3.3e-20 104.8 211 32.7
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 5.6e-20 104.0 142 41.5
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 6.2e-19 100.5 171 33.9
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 6.2e-19 100.5 171 34.5
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.8e-18 99.0 185 34.6
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 2.4e-18 98.6 116 44.0
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 4.0e-18 97.8 101 49.5
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 6.8e-18 97.1 167 31.7
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 8.9e-18 96.7 179 34.6
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 8.9e-18 96.7 179 35.2
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 8.9e-18 96.7 150 34.7
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 1.2e-17 96.3 201 32.8
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 1.2e-17 96.3 209 31.1
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 3.4e-17 94.7 187 34.2
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 5.8e-17 94.0 151 36.4
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 5.8e-17 94.0 156 34.6
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 1.3e-16 92.8 145 31.7
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 2.2e-16 92.0 189 33.3
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 2.9e-16 91.7 143 36.4
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 4.9e-16 90.9 189 35.4
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 6.4e-16 90.5 143 36.4
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 1.1e-15 89.7 171 34.5
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 3.2e-15 88.2 167 35.9
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 7.1e-15 87.0 187 34.2
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 3.5e-14 84.7 125 36.0
BcaB02g06478 Brassica carinata HOM05D004824 ORTHO05D003903 6.0e-14 84.0 153 34.0
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 1.3e-13 82.8 143 35.0
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 2.3e-13 82.0 131 37.4
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 3.0e-13 81.6 205 29.8
BcaC05g25286 Brassica carinata HOM05D004824 ORTHO05D003903 5.1e-13 80.9 158 34.8
C05p11650 Brassica napus HOM05D004824 ORTHO05D003903 5.1e-13 80.9 158 34.8
BolC5t29912H Brassica oleracea HOM05D004824 ORTHO05D003903 5.1e-13 80.9 158 34.8
A06p09890 Brassica napus HOM05D004824 ORTHO05D003903 6.6e-13 80.5 162 34.0
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.1e-12 79.7 72 58.3
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 1.9e-12 79.0 128 34.4
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 2.5e-12 78.6 159 33.3
BcaB08g37396 Brassica carinata HOM05D004824 ORTHO05D017526 5.6e-12 77.4 148 32.4
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 9.6e-12 76.6 116 35.3
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 1.2e-11 76.3 68 58.8
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 2.1e-11 75.5 62 56.5
AUR62027511 Chenopodium quinoa HOM05D004824 ORTHO05D003903 6.2e-11 73.9 64 56.2
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 2.4e-10 72.0 77 45.5
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 2.0e-09 68.9 173 27.7
Eucgr.F01187 Eucalyptus grandis HOM05D004824 ORTHO05D003903 2.0e-09 68.9 67 53.7
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 1.3e-08 66.2 122 29.5
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 2.2e-08 65.5 73 46.6
Glyma.07G217800 Glycine max HOM05D004824 ORTHO05D003903 2.9e-08 65.1 59 49.2
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 3.8e-08 64.7 195 26.2
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 4.9e-08 64.3 122 29.5
CARHR118970 Cardamine hirsuta HOM05D004824 ORTHO05D003903 8.4e-08 63.5 72 44.4
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 1.4e-07 62.8 74 44.6
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 1.9e-07 62.4 145 28.3
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.4e-07 62.0 118 34.7
Zm00001eb413560 Zea mays HOM05D026208 ORTHO05D030341 3.2e-07 61.6 184 24.5
Carub.0001s1351 Capsella rubella HOM05D004824 ORTHO05D003903 4.2e-07 61.2 68 47.1
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 4.2e-07 61.2 146 29.5
ATR0680G090 Amborella trichopoda HOM05D007893 ORTHO05D010042 5.4e-07 60.8 141 32.6
Nitab4.5_0000256g0090 Nicotiana tabacum HOM05D007893 ORTHO05D010042 5.4e-07 60.8 194 25.3
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 7.1e-07 60.5 208 27.4
TPR.G27632 Trifolium pratense HOM05D004824 ORTHO05D003903 7.1e-07 60.5 60 46.7
MELO3C010547.2 Cucumis melo HOM05D004824 ORTHO05D003903 1.6e-06 59.3 61 47.5
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 1.6e-06 59.3 97 38.1
CiPaw.12G066600 Carya illinoinensis HOM05D007893 ORTHO05D010042 2.7e-06 58.5 140 26.4
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.7e-06 58.5 142 29.6
arahy.Tifrunner.gnm1.ann1.40GBPJ Arachis hypogaea HOM05D007893 ORTHO05D010042 3.5e-06 58.2 122 28.7
Actinidia12984 Actinidia chinensis HOM05D007675 ORTHO05D009699 4.6e-06 57.8 135 25.9
Sc22g0001680 Simmondsia chinensis HOM05D007893 ORTHO05D010042 4.6e-06 57.8 140 29.3
Lalb_Chr08g0231971 Lupinus albus HOM05D007893 ORTHO05D010042 6.0e-06 57.4 141 27.0
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 6.0e-06 57.4 73 42.5


User provided reference genes

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