Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 6.3e-194 680.6 356 100.0
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 5.8e-179 630.9 356 91.6
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 5.6e-158 561.2 359 82.2
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 5.2e-156 554.7 363 80.4
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 1.3e-154 550.1 363 78.5
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.7e-154 549.7 363 78.8
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 2.9e-154 548.9 351 80.3
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 2.9e-154 548.9 361 78.4
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 4.9e-154 548.1 363 79.1
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.1e-153 547.0 363 79.6
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 5.4e-153 544.7 363 78.2
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 9.3e-153 543.9 362 79.0
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.1e-152 542.7 353 79.9
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 2.7e-152 542.3 362 77.6
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 1.3e-151 540.0 360 78.9
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 3.9e-151 538.5 358 78.8
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 8.7e-151 537.3 366 76.5
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 1.5e-150 536.6 356 78.4
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 1.9e-150 536.2 364 77.2
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 5.6e-150 534.6 358 77.7
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.6e-149 533.1 362 75.7
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 1.6e-149 533.1 362 75.7
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 2.1e-149 532.7 362 76.8
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 2.1e-149 532.7 356 77.2
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 3.6e-149 531.9 362 76.5
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 3.6e-149 531.9 336 81.2
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 4.8e-149 531.6 351 77.2
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 4.8e-149 531.6 362 75.4
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 4.8e-149 531.6 359 76.0
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 8.1e-149 530.8 363 77.1
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 5.3e-148 528.1 356 76.7
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 9.0e-148 527.3 363 76.9
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.0e-147 526.2 378 74.1
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.6e-147 525.8 378 74.1
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 2.6e-147 525.8 356 76.1
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 2.6e-147 525.8 356 78.9
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 2.6e-147 525.8 342 76.6
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 4.4e-147 525.0 343 78.1
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 4.4e-147 525.0 363 76.6
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 4.4e-147 525.0 334 79.9
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 9.9e-147 523.9 330 80.3
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 9.9e-147 523.9 361 74.5
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 3.8e-146 521.9 342 77.8
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 8.4e-146 520.8 351 77.5
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.1e-145 520.4 383 72.8
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 1.9e-145 519.6 329 79.6
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 4.2e-145 518.5 360 74.2
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 5.4e-145 518.1 356 75.0
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 3.5e-144 515.4 361 73.4
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 6.0e-144 514.6 361 73.4
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 3.0e-143 512.3 362 74.3
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 1.5e-142 510.0 333 77.5
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 3.3e-142 508.8 356 73.6
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 5.6e-142 508.1 360 73.9
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 9.6e-142 507.3 458 63.3
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 1.3e-141 506.9 329 80.2
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 8.1e-141 504.2 343 75.5
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 2.0e-139 499.6 327 75.5
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 2.6e-139 499.2 349 73.4
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 7.6e-139 497.7 333 75.7
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 1.3e-138 496.9 351 72.6
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 1.7e-138 496.5 324 76.9
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.7e-138 496.5 357 71.7
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.7e-138 496.5 352 73.6
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 4.9e-138 495.0 362 72.1
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 4.2e-137 491.9 328 75.6
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 5.4e-137 491.5 355 72.1
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 5.4e-137 491.5 356 72.5
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 1.2e-136 490.3 339 75.2
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 1.6e-136 490.0 363 70.0
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 1.6e-136 490.0 357 70.9
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 2.7e-136 489.2 333 74.5
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 4.6e-136 488.4 344 73.3
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 4.6e-136 488.4 371 69.0
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 1.0e-135 487.3 333 75.1
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 1.3e-135 486.9 358 71.2
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 3.9e-135 485.3 355 71.0
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 2.5e-134 482.6 323 76.2
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 3.3e-134 482.3 351 72.6
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 5.6e-134 481.5 329 76.3
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 1.3e-133 480.3 327 78.0
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 4.8e-133 478.4 331 74.6
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 6.2e-133 478.0 333 73.0
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.4e-132 476.9 366 70.5
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 1.4e-132 476.9 333 73.0
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 6.9e-132 474.6 358 70.7
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 9.0e-132 474.2 361 72.6
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 1.5e-131 473.4 357 71.1
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 3.4e-131 472.2 357 70.9
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 2.9e-130 469.2 357 69.7
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 6.5e-130 468.0 285 82.8
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 8.4e-130 467.6 361 71.5
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 7.1e-129 464.5 324 75.9
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 1.2e-128 463.8 312 77.6
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 1.2e-128 463.8 355 69.6
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 3.5e-128 462.2 324 75.9
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 1.3e-127 460.3 355 69.9
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 2.3e-127 459.5 334 72.5
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 8.7e-127 457.6 334 71.0
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 4.3e-126 455.3 347 69.2
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 6.2e-125 451.4 357 67.5
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 8.2e-125 451.1 358 65.6
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 4.5e-123 445.3 356 67.4
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 4.5e-123 445.3 357 68.1
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 5.8e-123 444.9 344 68.3
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 7.6e-123 444.5 348 67.8
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 1.0e-122 444.1 355 67.0
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 2.2e-122 443.0 361 66.8
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 3.8e-122 442.2 361 66.8
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 5.0e-122 441.8 377 64.5
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 1.1e-121 440.7 356 66.9
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 2.5e-121 439.5 286 76.6
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.5e-121 439.5 333 68.8
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 3.2e-121 439.1 353 68.8
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 4.2e-121 438.7 361 66.8
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 4.2e-121 438.7 361 66.8
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 5.5e-121 438.3 356 68.0
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 7.2e-121 438.0 344 69.2
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 1.6e-120 436.8 351 68.1
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 2.1e-120 436.4 361 66.5
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 6.7e-119 431.4 356 62.1
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 1.5e-118 430.3 354 65.8
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 1.5e-118 430.3 354 65.8
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 3.3e-118 429.1 350 62.0
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 4.3e-118 428.7 353 61.8
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 6.3e-117 424.9 354 64.7
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 1.4e-116 423.7 348 64.9
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 5.3e-116 421.8 363 63.9
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 1.5e-115 420.2 334 69.2
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.4e-113 413.7 283 75.3
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 2.3e-111 406.4 349 59.6
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 2.0e-110 403.3 467 53.3
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 6.9e-108 394.8 330 60.6
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 3.6e-104 382.5 355 61.4
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 1.3e-101 374.0 331 64.4
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 8.2e-101 371.3 271 71.6
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 7.5e-94 348.2 338 55.0
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 1.3e-93 347.4 280 67.9
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 2.4e-92 343.2 261 69.0
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 2.2e-90 336.7 347 51.6
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 2.5e-89 333.2 221 79.6
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 1.2e-88 330.9 226 76.1
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 1.2e-83 314.3 288 55.2
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 3.5e-83 312.8 198 79.3
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 4.5e-83 312.4 331 52.6
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.3e-82 310.8 220 75.0
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 8.5e-82 308.1 353 49.3
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 6.8e-79 298.5 218 68.3
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 9.8e-78 294.7 206 73.8
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 1.7e-77 293.9 220 71.4
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 3.4e-70 269.6 275 55.3
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 7.3e-65 251.9 281 47.7
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 4.1e-52 209.5 134 79.1
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 5.1e-50 202.6 178 62.4
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 8.6e-50 201.8 138 76.1
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 1.5e-49 201.1 134 76.9
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 9.2e-44 181.8 164 63.4
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 1.2e-35 154.8 90 81.1
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 1.9e-33 147.5 108 72.2
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 6.9e-23 112.5 92 56.5
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 6.4e-21 105.9 268 26.1
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 5.6e-17 92.8 249 28.1


User provided reference genes

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