AnalysisController Object
(
[name] => Analysis
[uses] => Array
(
[0] => Annotation
[1] => AnnotSource
[2] => Configuration
[3] => Similarities
[4] => GeneFamily
[5] => GeneFamilyTypes
[6] => Msa
[7] => GfDatum
[8] => AdExperiments
[9] => FunctionalClustersExperiments
[10] => Trees
)
[helpers] => Array
(
[Session] =>
[Html] =>
[Form] =>
[Cache] =>
)
[components] => Array
(
[Session] =>
[DataUtils] =>
[FunctionalAnnotationUtils] =>
[GeneFamilies] =>
[Organism] =>
[Blast] =>
[WorkbenchUtils] =>
[PhylogeneticModuleUtils] =>
[ExternalPrograms] =>
[FastaUtils] =>
[MsaUtils] =>
[PhylogeneticUtils] =>
[Sequence] =>
[RequestHandler] =>
)
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[_responseClass:protected] => CakeResponse
[viewPath] => Analysis
[layoutPath] =>
[viewVars] => Array
(
[sidebar] => gene_sidebar
[navigation_bar_info] => Array
(
[num_colinearity_runs] => 1
[num_colinearity_with_dating_runs] => 0
[num_functional_clusters_runs] => 6
[has_pan_genomes] =>
[has_blast_db] => 1
)
[allowed_extra_sequences_types] => Array
(
[aa] => Protein
[dna] => DNA
)
[allowed_editing_methods] => Array
(
[column] => Positions only
[row] => Genes only
[column_row] => Positions and Genes
[none] => No editing
)
[allowed_tree_programs] => Array
(
[fasttree] => FastTree
[iqtree] => IQ-TREE (includes model testing)
[raxml] => RAxML
[phyml] => PhyML
)
[allowed_msa_programs] => Array
(
[muscle] => MUSCLE
[mafft] => MAFFT
)
[allowed_number_blasthits] => Array
(
[0] => all
[1] => 20
[2] => 10
[3] => 5
[4] => 1
)
[similarity_hits_genes] => Array
(
[TWI36G0290] => Array
(
[gene_id] => TWI36G0290
[e_value] => 2.5e-256
[bit_score] => 888.3
[alignment_length] => 443
[identity_percentage] => 100.0
[species] => twi
[common_name] => Tripterygium wilfordii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Atru.chr2.445] => Array
(
[gene_id] => Atru.chr2.445
[e_value] => 3.1e-198
[bit_score] => 695.3
[alignment_length] => 423
[identity_percentage] => 80.4
[species] => acertr
[common_name] => Acer truncatum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Manes.09G165600] => Array
(
[gene_id] => Manes.09G165600
[e_value] => 1.3e-193
[bit_score] => 679.9
[alignment_length] => 428
[identity_percentage] => 77.8
[species] => mes
[common_name] => Manihot esculenta
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Ciclev10001213m.g] => Array
(
[gene_id] => Ciclev10001213m.g
[e_value] => 8.7e-193
[bit_score] => 677.2
[alignment_length] => 430
[identity_percentage] => 77.9
[species] => ccl
[common_name] => Citrus clementina
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[GSVIVG01000036001] => Array
(
[gene_id] => GSVIVG01000036001
[e_value] => 3.3e-192
[bit_score] => 675.2
[alignment_length] => 425
[identity_percentage] => 77.4
[species] => vvi
[common_name] => Vitis vinifera
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Potri.013G024100] => Array
(
[gene_id] => Potri.013G024100
[e_value] => 2.1e-191
[bit_score] => 672.5
[alignment_length] => 426
[identity_percentage] => 76.1
[species] => ptr
[common_name] => Populus trichocarpa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Prupe.6G327700] => Array
(
[gene_id] => Prupe.6G327700
[e_value] => 4.8e-191
[bit_score] => 671.4
[alignment_length] => 421
[identity_percentage] => 77.7
[species] => ppe
[common_name] => Prunus persica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CSS0022622] => Array
(
[gene_id] => CSS0022622
[e_value] => 6.2e-191
[bit_score] => 671.0
[alignment_length] => 428
[identity_percentage] => 78.0
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Ciclev10001239m.g] => Array
(
[gene_id] => Ciclev10001239m.g
[e_value] => 3.4e-189
[bit_score] => 665.2
[alignment_length] => 429
[identity_percentage] => 77.2
[species] => ccl
[common_name] => Citrus clementina
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Nn4g26223] => Array
(
[gene_id] => Nn4g26223
[e_value] => 1.3e-188
[bit_score] => 663.3
[alignment_length] => 426
[identity_percentage] => 75.6
[species] => nnu
[common_name] => Nelumbo nucifera
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[FAN02G1114] => Array
(
[gene_id] => FAN02G1114
[e_value] => 2.2e-188
[bit_score] => 662.5
[alignment_length] => 424
[identity_percentage] => 76.4
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Rhsim05G0143000] => Array
(
[gene_id] => Rhsim05G0143000
[e_value] => 4.9e-188
[bit_score] => 661.4
[alignment_length] => 427
[identity_percentage] => 77.8
[species] => rsi
[common_name] => Rhododendron simsii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CSS0019715] => Array
(
[gene_id] => CSS0019715
[e_value] => 8.4e-188
[bit_score] => 660.6
[alignment_length] => 428
[identity_percentage] => 76.6
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Haze_04208] => Array
(
[gene_id] => Haze_04208
[e_value] => 1.4e-187
[bit_score] => 659.8
[alignment_length] => 467
[identity_percentage] => 72.2
[species] => cav
[common_name] => Corylus avellana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[FAN14G5649] => Array
(
[gene_id] => FAN14G5649
[e_value] => 1.4e-187
[bit_score] => 659.8
[alignment_length] => 424
[identity_percentage] => 76.2
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D008060
)
)
[Sabra13G0025700] => Array
(
[gene_id] => Sabra13G0025700
[e_value] => 4.2e-187
[bit_score] => 658.3
[alignment_length] => 422
[identity_percentage] => 76.5
[species] => sbr
[common_name] => Salix brachista
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[FAN05G0213] => Array
(
[gene_id] => FAN05G0213
[e_value] => 1.2e-186
[bit_score] => 656.8
[alignment_length] => 424
[identity_percentage] => 75.9
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D008060
)
)
[FAN05G4155] => Array
(
[gene_id] => FAN05G4155
[e_value] => 1.6e-186
[bit_score] => 656.4
[alignment_length] => 424
[identity_percentage] => 75.7
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[QL03p005900] => Array
(
[gene_id] => QL03p005900
[e_value] => 2.7e-186
[bit_score] => 655.6
[alignment_length] => 424
[identity_percentage] => 75.2
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[QL03p006495] => Array
(
[gene_id] => QL03p006495
[e_value] => 2.7e-186
[bit_score] => 655.6
[alignment_length] => 424
[identity_percentage] => 75.2
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MD04G1207000] => Array
(
[gene_id] => MD04G1207000
[e_value] => 3.5e-186
[bit_score] => 655.2
[alignment_length] => 421
[identity_percentage] => 76.0
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CiPaw.07G016200] => Array
(
[gene_id] => CiPaw.07G016200
[e_value] => 1.1e-184
[bit_score] => 650.2
[alignment_length] => 424
[identity_percentage] => 75.0
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[TAR633G0162] => Array
(
[gene_id] => TAR633G0162
[e_value] => 4.3e-184
[bit_score] => 648.3
[alignment_length] => 427
[identity_percentage] => 74.9
[species] => tar
[common_name] => Trochodendron aralioides
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[RcHm_v2.0_Chr3g0454411] => Array
(
[gene_id] => RcHm_v2.0_Chr3g0454411
[e_value] => 9.7e-184
[bit_score] => 647.1
[alignment_length] => 422
[identity_percentage] => 75.1
[species] => rch
[common_name] => Rosa chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CANSAT54G0385] => Array
(
[gene_id] => CANSAT54G0385
[e_value] => 1.3e-183
[bit_score] => 646.7
[alignment_length] => 425
[identity_percentage] => 76.2
[species] => cansat
[common_name] => Cannabis sativa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MD12G1220900] => Array
(
[gene_id] => MD12G1220900
[e_value] => 1.3e-183
[bit_score] => 646.7
[alignment_length] => 421
[identity_percentage] => 74.6
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[arahy.Tifrunner.gnm1.ann1.QD3ZBY] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.QD3ZBY
[e_value] => 3.7e-183
[bit_score] => 645.2
[alignment_length] => 424
[identity_percentage] => 73.6
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Duzib106G0949] => Array
(
[gene_id] => Duzib106G0949
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[bit_score] => 642.9
[alignment_length] => 423
[identity_percentage] => 74.0
[species] => dzi
[common_name] => Durio zibethinus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[PGR083G2513] => Array
(
[gene_id] => PGR083G2513
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[bit_score] => 642.9
[alignment_length] => 425
[identity_percentage] => 73.9
[species] => pgr
[common_name] => Punica granatum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[FAN09G2049] => Array
(
[gene_id] => FAN09G2049
[e_value] => 2.4e-182
[bit_score] => 642.5
[alignment_length] => 420
[identity_percentage] => 75.0
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D008060
)
)
[Cfa006574] => Array
(
[gene_id] => Cfa006574
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[bit_score] => 641.3
[alignment_length] => 436
[identity_percentage] => 74.5
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Eucgr.B01994] => Array
(
[gene_id] => Eucgr.B01994
[e_value] => 1.5e-181
[bit_score] => 639.8
[alignment_length] => 425
[identity_percentage] => 73.2
[species] => egr
[common_name] => Eucalyptus grandis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[QL03p006454] => Array
(
[gene_id] => QL03p006454
[e_value] => 4.5e-181
[bit_score] => 638.3
[alignment_length] => 424
[identity_percentage] => 73.1
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[QL03p005872] => Array
(
[gene_id] => QL03p005872
[e_value] => 1.0e-180
[bit_score] => 637.1
[alignment_length] => 424
[identity_percentage] => 73.1
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[PGR083G0598] => Array
(
[gene_id] => PGR083G0598
[e_value] => 2.2e-180
[bit_score] => 636.0
[alignment_length] => 425
[identity_percentage] => 72.9
[species] => pgr
[common_name] => Punica granatum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Glyma.10G155400] => Array
(
[gene_id] => Glyma.10G155400
[e_value] => 6.5e-180
[bit_score] => 634.4
[alignment_length] => 422
[identity_percentage] => 73.5
[species] => gma
[common_name] => Glycine max
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Gohir.A11G264133] => Array
(
[gene_id] => Gohir.A11G264133
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[bit_score] => 634.0
[alignment_length] => 425
[identity_percentage] => 73.2
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Gohir.D11G274200] => Array
(
[gene_id] => Gohir.D11G274200
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[bit_score] => 633.3
[alignment_length] => 425
[identity_percentage] => 73.2
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Cfa006573] => Array
(
[gene_id] => Cfa006573
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[bit_score] => 632.5
[alignment_length] => 436
[identity_percentage] => 73.9
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[ECA238G4171] => Array
(
[gene_id] => ECA238G4171
[e_value] => 3.2e-179
[bit_score] => 632.1
[alignment_length] => 435
[identity_percentage] => 71.7
[species] => eca
[common_name] => Erigeron canadensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MD00G1192400] => Array
(
[gene_id] => MD00G1192400
[e_value] => 5.5e-179
[bit_score] => 631.3
[alignment_length] => 421
[identity_percentage] => 73.6
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[QL03p006470] => Array
(
[gene_id] => QL03p006470
[e_value] => 7.2e-179
[bit_score] => 630.9
[alignment_length] => 424
[identity_percentage] => 72.9
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[TAR633G1828] => Array
(
[gene_id] => TAR633G1828
[e_value] => 7.2e-179
[bit_score] => 630.9
[alignment_length] => 426
[identity_percentage] => 73.7
[species] => tar
[common_name] => Trochodendron aralioides
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Glyma.20G232900] => Array
(
[gene_id] => Glyma.20G232900
[e_value] => 9.4e-179
[bit_score] => 630.6
[alignment_length] => 422
[identity_percentage] => 73.2
[species] => gma
[common_name] => Glycine max
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[VMungo0720G0875] => Array
(
[gene_id] => VMungo0720G0875
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[bit_score] => 629.4
[alignment_length] => 420
[identity_percentage] => 73.1
[species] => vmu
[common_name] => Vigna mungo
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Ca_10104_v3] => Array
(
[gene_id] => Ca_10104_v3
[e_value] => 4.6e-178
[bit_score] => 628.2
[alignment_length] => 420
[identity_percentage] => 71.9
[species] => car
[common_name] => Cicer arietinum L.
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Gorai.007G295900] => Array
(
[gene_id] => Gorai.007G295900
[e_value] => 6.1e-178
[bit_score] => 627.9
[alignment_length] => 434
[identity_percentage] => 72.1
[species] => gra
[common_name] => Gossypium raimondii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[RcHm_v2.0_Chr3g0454491] => Array
(
[gene_id] => RcHm_v2.0_Chr3g0454491
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[bit_score] => 627.9
[alignment_length] => 423
[identity_percentage] => 73.0
[species] => rch
[common_name] => Rosa chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MD12G1221100] => Array
(
[gene_id] => MD12G1221100
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[bit_score] => 627.5
[alignment_length] => 419
[identity_percentage] => 73.0
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Duzib177G0593] => Array
(
[gene_id] => Duzib177G0593
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[bit_score] => 627.1
[alignment_length] => 429
[identity_percentage] => 71.1
[species] => dzi
[common_name] => Durio zibethinus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Duzib177G0013] => Array
(
[gene_id] => Duzib177G0013
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[bit_score] => 625.5
[alignment_length] => 429
[identity_percentage] => 70.9
[species] => dzi
[common_name] => Durio zibethinus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[COL.COLO4_13489] => Array
(
[gene_id] => COL.COLO4_13489
[e_value] => 3.9e-177
[bit_score] => 625.2
[alignment_length] => 431
[identity_percentage] => 72.6
[species] => col
[common_name] => Corchorus olitorius
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lj5g0018333] => Array
(
[gene_id] => Lj5g0018333
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[bit_score] => 623.6
[alignment_length] => 423
[identity_percentage] => 72.6
[species] => lja
[common_name] => Lotus japonicus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Cc00_g15590] => Array
(
[gene_id] => Cc00_g15590
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[bit_score] => 622.5
[alignment_length] => 429
[identity_percentage] => 72.3
[species] => ccan
[common_name] => Coffea canephora
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lalb_Chr21g0310741] => Array
(
[gene_id] => Lalb_Chr21g0310741
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[bit_score] => 621.7
[alignment_length] => 428
[identity_percentage] => 70.3
[species] => lal
[common_name] => Lupinus albus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Aqoxy2G03296] => Array
(
[gene_id] => Aqoxy2G03296
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[bit_score] => 621.3
[alignment_length] => 428
[identity_percentage] => 70.6
[species] => aox
[common_name] => Aquilegia oxysepala
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Psat6g149520] => Array
(
[gene_id] => Psat6g149520
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[bit_score] => 619.8
[alignment_length] => 420
[identity_percentage] => 71.0
[species] => psa
[common_name] => Pisum sativum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[EL10Ac4g09339] => Array
(
[gene_id] => EL10Ac4g09339
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[bit_score] => 619.4
[alignment_length] => 424
[identity_percentage] => 71.5
[species] => bvu
[common_name] => Beta vulgaris
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[FAN14G5181] => Array
(
[gene_id] => FAN14G5181
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[bit_score] => 619.4
[alignment_length] => 424
[identity_percentage] => 72.6
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D008060
)
)
[HanXRQChr14g0446451] => Array
(
[gene_id] => HanXRQChr14g0446451
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[bit_score] => 619.0
[alignment_length] => 427
[identity_percentage] => 70.5
[species] => han
[common_name] => Helianthus annuus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MSTRG.8132] => Array
(
[gene_id] => MSTRG.8132
[e_value] => 3.7e-175
[bit_score] => 618.6
[alignment_length] => 420
[identity_percentage] => 71.9
[species] => ama
[common_name] => Avicennia marina
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Medtr1g082750] => Array
(
[gene_id] => Medtr1g082750
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[bit_score] => 618.6
[alignment_length] => 420
[identity_percentage] => 71.2
[species] => mtr
[common_name] => Medicago truncatula
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[AUR62000842] => Array
(
[gene_id] => AUR62000842
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[bit_score] => 617.1
[alignment_length] => 421
[identity_percentage] => 71.0
[species] => cqu
[common_name] => Chenopodium quinoa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[vmacro19630] => Array
(
[gene_id] => vmacro19630
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[bit_score] => 617.1
[alignment_length] => 479
[identity_percentage] => 66.8
[species] => vma
[common_name] => Vaccinium macrocarpon
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[PSO170G5899] => Array
(
[gene_id] => PSO170G5899
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[bit_score] => 614.0
[alignment_length] => 427
[identity_percentage] => 71.4
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Sed0003731] => Array
(
[gene_id] => Sed0003731
[e_value] => 1.2e-173
[bit_score] => 613.6
[alignment_length] => 420
[identity_percentage] => 70.2
[species] => sed
[common_name] => Sechium edule
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lsat_1_v5_gn_2_64320] => Array
(
[gene_id] => Lsat_1_v5_gn_2_64320
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[bit_score] => 612.5
[alignment_length] => 428
[identity_percentage] => 69.4
[species] => lsa
[common_name] => Lactuca sativa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Gohir.A11G264000] => Array
(
[gene_id] => Gohir.A11G264000
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[bit_score] => 611.7
[alignment_length] => 426
[identity_percentage] => 71.4
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Cpa.g.sc48.34] => Array
(
[gene_id] => Cpa.g.sc48.34
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[bit_score] => 609.8
[alignment_length] => 420
[identity_percentage] => 73.1
[species] => cpa
[common_name] => Carica papaya
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Hund21815] => Array
(
[gene_id] => Hund21815
[e_value] => 2.2e-172
[bit_score] => 609.4
[alignment_length] => 426
[identity_percentage] => 70.0
[species] => sun
[common_name] => Selenicereus undatus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Hma1.2p1_1362F.1_g278280] => Array
(
[gene_id] => Hma1.2p1_1362F.1_g278280
[e_value] => 2.9e-172
[bit_score] => 609.0
[alignment_length] => 427
[identity_percentage] => 72.8
[species] => hma
[common_name] => Hydrangea macrophylla
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[TPR.G6073] => Array
(
[gene_id] => TPR.G6073
[e_value] => 3.8e-172
[bit_score] => 608.6
[alignment_length] => 424
[identity_percentage] => 70.5
[species] => tpr
[common_name] => Trifolium pratense
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CsaV3_1G039020] => Array
(
[gene_id] => CsaV3_1G039020
[e_value] => 5.0e-172
[bit_score] => 608.2
[alignment_length] => 420
[identity_percentage] => 70.0
[species] => csa
[common_name] => Cucumis sativus L.
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Sc09g0003230] => Array
(
[gene_id] => Sc09g0003230
[e_value] => 5.0e-172
[bit_score] => 608.2
[alignment_length] => 442
[identity_percentage] => 68.3
[species] => sci
[common_name] => Simmondsia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Ah.06g189220] => Array
(
[gene_id] => Ah.06g189220
[e_value] => 1.1e-171
[bit_score] => 607.1
[alignment_length] => 422
[identity_percentage] => 70.6
[species] => amhyb
[common_name] => Amaranthus hybridus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[AUR62005131] => Array
(
[gene_id] => AUR62005131
[e_value] => 1.1e-171
[bit_score] => 607.1
[alignment_length] => 429
[identity_percentage] => 68.8
[species] => cqu
[common_name] => Chenopodium quinoa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[RcHm_v2.0_Chr3g0454461] => Array
(
[gene_id] => RcHm_v2.0_Chr3g0454461
[e_value] => 1.1e-171
[bit_score] => 607.1
[alignment_length] => 390
[identity_percentage] => 75.9
[species] => rch
[common_name] => Rosa chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[COL.COLO4_13495] => Array
(
[gene_id] => COL.COLO4_13495
[e_value] => 2.5e-171
[bit_score] => 605.9
[alignment_length] => 441
[identity_percentage] => 68.9
[species] => col
[common_name] => Corchorus olitorius
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Gohir.D11G274100] => Array
(
[gene_id] => Gohir.D11G274100
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[bit_score] => 604.4
[alignment_length] => 421
[identity_percentage] => 71.3
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Gorai.007G295700] => Array
(
[gene_id] => Gorai.007G295700
[e_value] => 3.6e-170
[bit_score] => 602.1
[alignment_length] => 421
[identity_percentage] => 70.8
[species] => gra
[common_name] => Gossypium raimondii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[SalBow6G6487] => Array
(
[gene_id] => SalBow6G6487
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[bit_score] => 599.7
[alignment_length] => 423
[identity_percentage] => 70.9
[species] => sbo
[common_name] => Salvia bowleyana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Eucgr.B01996] => Array
(
[gene_id] => Eucgr.B01996
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[bit_score] => 597.4
[alignment_length] => 419
[identity_percentage] => 69.2
[species] => egr
[common_name] => Eucalyptus grandis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Migut.F01717] => Array
(
[gene_id] => Migut.F01717
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[bit_score] => 596.7
[alignment_length] => 428
[identity_percentage] => 69.2
[species] => egut
[common_name] => Erythranthe guttata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Nitab4.5_0000327g0020] => Array
(
[gene_id] => Nitab4.5_0000327g0020
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[bit_score] => 596.7
[alignment_length] => 424
[identity_percentage] => 70.0
[species] => nta
[common_name] => Nicotiana tabacum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Oeu000798.1] => Array
(
[gene_id] => Oeu000798.1
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[bit_score] => 596.3
[alignment_length] => 422
[identity_percentage] => 70.1
[species] => oeu
[common_name] => Olea europaea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Nitab4.5_0005818g0010] => Array
(
[gene_id] => Nitab4.5_0005818g0010
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[bit_score] => 595.9
[alignment_length] => 424
[identity_percentage] => 69.3
[species] => nta
[common_name] => Nicotiana tabacum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Peaxi162Scf00471g00004] => Array
(
[gene_id] => Peaxi162Scf00471g00004
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[bit_score] => 594.7
[alignment_length] => 423
[identity_percentage] => 70.2
[species] => pax
[common_name] => Petunia axillaris
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[SGA_v2.0_scaffold2G01355] => Array
(
[gene_id] => SGA_v2.0_scaffold2G01355
[e_value] => 6.3e-167
[bit_score] => 591.3
[alignment_length] => 423
[identity_percentage] => 70.0
[species] => sas
[common_name] => Striga asiatica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[ClCG03G016900] => Array
(
[gene_id] => ClCG03G016900
[e_value] => 9.1e-166
[bit_score] => 587.4
[alignment_length] => 419
[identity_percentage] => 68.5
[species] => cla
[common_name] => Citrullus lanatus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[QL03p005842] => Array
(
[gene_id] => QL03p005842
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[bit_score] => 583.6
[alignment_length] => 421
[identity_percentage] => 69.8
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[THA.LOC104820921] => Array
(
[gene_id] => THA.LOC104820921
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[bit_score] => 583.2
[alignment_length] => 422
[identity_percentage] => 66.8
[species] => tha
[common_name] => Tarenaya hassleriana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MELO3C015328.2] => Array
(
[gene_id] => MELO3C015328.2
[e_value] => 3.8e-164
[bit_score] => 582.0
[alignment_length] => 427
[identity_percentage] => 67.4
[species] => cme
[common_name] => Cucumis melo
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MD12G1220800] => Array
(
[gene_id] => MD12G1220800
[e_value] => 5.0e-164
[bit_score] => 581.6
[alignment_length] => 433
[identity_percentage] => 67.4
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[arahy.Tifrunner.gnm1.ann1.6LU9QT] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.6LU9QT
[e_value] => 1.0e-161
[bit_score] => 573.9
[alignment_length] => 427
[identity_percentage] => 67.0
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Duzib177G0831] => Array
(
[gene_id] => Duzib177G0831
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[bit_score] => 573.2
[alignment_length] => 385
[identity_percentage] => 74.5
[species] => dzi
[common_name] => Durio zibethinus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Duzib177G1171] => Array
(
[gene_id] => Duzib177G1171
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[bit_score] => 571.2
[alignment_length] => 385
[identity_percentage] => 74.3
[species] => dzi
[common_name] => Durio zibethinus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[DCAR_017063] => Array
(
[gene_id] => DCAR_017063
[e_value] => 2.0e-160
[bit_score] => 569.7
[alignment_length] => 423
[identity_percentage] => 67.6
[species] => dca
[common_name] => Daucus carota
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Thhalv10007679m.g] => Array
(
[gene_id] => Thhalv10007679m.g
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[bit_score] => 568.5
[alignment_length] => 418
[identity_percentage] => 67.7
[species] => esa
[common_name] => Eutrema salsugineum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Aa31sc136G90] => Array
(
[gene_id] => Aa31sc136G90
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[bit_score] => 567.8
[alignment_length] => 419
[identity_percentage] => 68.0
[species] => aar
[common_name] => Aethionema arabicum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CiPaw.07G016400] => Array
(
[gene_id] => CiPaw.07G016400
[e_value] => 1.3e-159
[bit_score] => 567.0
[alignment_length] => 360
[identity_percentage] => 77.2
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Actinidia19796] => Array
(
[gene_id] => Actinidia19796
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[bit_score] => 565.1
[alignment_length] => 426
[identity_percentage] => 68.8
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BcaC07g41912] => Array
(
[gene_id] => BcaC07g41912
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[bit_score] => 564.3
[alignment_length] => 415
[identity_percentage] => 67.5
[species] => bca
[common_name] => Brassica carinata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[PGR083G0653] => Array
(
[gene_id] => PGR083G0653
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[bit_score] => 563.5
[alignment_length] => 425
[identity_percentage] => 66.4
[species] => pgr
[common_name] => Punica granatum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CsaV3_1G039030] => Array
(
[gene_id] => CsaV3_1G039030
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[bit_score] => 563.1
[alignment_length] => 430
[identity_percentage] => 65.6
[species] => csa
[common_name] => Cucumis sativus L.
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[AT1G08980] => Array
(
[gene_id] => AT1G08980
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[bit_score] => 562.0
[alignment_length] => 418
[identity_percentage] => 67.2
[species] => ath
[common_name] => Arabidopsis thaliana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BolC8t52500H] => Array
(
[gene_id] => BolC8t52500H
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[bit_score] => 561.6
[alignment_length] => 430
[identity_percentage] => 65.3
[species] => bol
[common_name] => Brassica oleracea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Sp1g07590] => Array
(
[gene_id] => Sp1g07590
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[bit_score] => 560.5
[alignment_length] => 417
[identity_percentage] => 66.7
[species] => spa
[common_name] => Schrenkiella parvula
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[A09p65640] => Array
(
[gene_id] => A09p65640
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[bit_score] => 558.9
[alignment_length] => 416
[identity_percentage] => 66.6
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BraA09t41908Z] => Array
(
[gene_id] => BraA09t41908Z
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[bit_score] => 558.9
[alignment_length] => 416
[identity_percentage] => 66.6
[species] => bra
[common_name] => Brassica rapa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[AL1G19410] => Array
(
[gene_id] => AL1G19410
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[bit_score] => 557.8
[alignment_length] => 418
[identity_percentage] => 66.7
[species] => aly
[common_name] => Arabidopsis lyrata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[RhsimUnG0207700] => Array
(
[gene_id] => RhsimUnG0207700
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[bit_score] => 555.1
[alignment_length] => 427
[identity_percentage] => 67.7
[species] => rsi
[common_name] => Rhododendron simsii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Rhsim13G0168400] => Array
(
[gene_id] => Rhsim13G0168400
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[bit_score] => 553.5
[alignment_length] => 427
[identity_percentage] => 67.4
[species] => rsi
[common_name] => Rhododendron simsii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CAN.G509.7] => Array
(
[gene_id] => CAN.G509.7
[e_value] => 7.2e-155
[bit_score] => 551.2
[alignment_length] => 429
[identity_percentage] => 67.6
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Carub.0001s0829] => Array
(
[gene_id] => Carub.0001s0829
[e_value] => 9.4e-155
[bit_score] => 550.8
[alignment_length] => 417
[identity_percentage] => 65.7
[species] => cru
[common_name] => Capsella rubella
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[C08p49720] => Array
(
[gene_id] => C08p49720
[e_value] => 1.6e-154
[bit_score] => 550.1
[alignment_length] => 416
[identity_percentage] => 65.9
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[DCAR_029426] => Array
(
[gene_id] => DCAR_029426
[e_value] => 6.1e-154
[bit_score] => 548.1
[alignment_length] => 439
[identity_percentage] => 63.1
[species] => dca
[common_name] => Daucus carota
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Carub.0001s0830] => Array
(
[gene_id] => Carub.0001s0830
[e_value] => 9.7e-152
[bit_score] => 540.8
[alignment_length] => 423
[identity_percentage] => 64.3
[species] => cru
[common_name] => Capsella rubella
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[ATR0626G200] => Array
(
[gene_id] => ATR0626G200
[e_value] => 2.2e-151
[bit_score] => 539.7
[alignment_length] => 429
[identity_percentage] => 62.5
[species] => atr
[common_name] => Amborella trichopoda
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[PGSC0003DMG400043451] => Array
(
[gene_id] => PGSC0003DMG400043451
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[bit_score] => 537.3
[alignment_length] => 417
[identity_percentage] => 65.7
[species] => stu
[common_name] => Solanum tuberosum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lj5A559T31] => Array
(
[gene_id] => Lj5A559T31
[e_value] => 7.0e-150
[bit_score] => 534.6
[alignment_length] => 343
[identity_percentage] => 75.2
[species] => lonja
[common_name] => Lonicera japonica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[HPP92_013681] => Array
(
[gene_id] => HPP92_013681
[e_value] => 7.0e-150
[bit_score] => 534.6
[alignment_length] => 428
[identity_percentage] => 61.2
[species] => vpl
[common_name] => Vanilla planifolia
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MELO3C015329.2] => Array
(
[gene_id] => MELO3C015329.2
[e_value] => 5.9e-149
[bit_score] => 531.6
[alignment_length] => 476
[identity_percentage] => 58.8
[species] => cme
[common_name] => Cucumis melo
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[FvH4_6g05640] => Array
(
[gene_id] => FvH4_6g05640
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[bit_score] => 530.8
[alignment_length] => 339
[identity_percentage] => 75.5
[species] => fve
[common_name] => Fragaria vesca
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Sopen10g035550] => Array
(
[gene_id] => Sopen10g035550
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[bit_score] => 530.8
[alignment_length] => 417
[identity_percentage] => 65.5
[species] => spe
[common_name] => Solanum pennellii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Solyc10g086170.1] => Array
(
[gene_id] => Solyc10g086170.1
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[bit_score] => 530.0
[alignment_length] => 418
[identity_percentage] => 65.6
[species] => sly
[common_name] => Solanum lycopersicum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[HPP92_013662] => Array
(
[gene_id] => HPP92_013662
[e_value] => 2.2e-148
[bit_score] => 529.6
[alignment_length] => 428
[identity_percentage] => 60.7
[species] => vpl
[common_name] => Vanilla planifolia
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CARHR008880] => Array
(
[gene_id] => CARHR008880
[e_value] => 4.7e-146
[bit_score] => 521.9
[alignment_length] => 395
[identity_percentage] => 65.8
[species] => chi
[common_name] => Cardamine hirsuta
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MD00G1147200] => Array
(
[gene_id] => MD00G1147200
[e_value] => 5.2e-145
[bit_score] => 518.5
[alignment_length] => 376
[identity_percentage] => 68.4
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Thecc.05G305200] => Array
(
[gene_id] => Thecc.05G305200
[e_value] => 1.2e-144
[bit_score] => 517.3
[alignment_length] => 343
[identity_percentage] => 73.2
[species] => tca
[common_name] => Theobroma cacao
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Thecc.05G305100] => Array
(
[gene_id] => Thecc.05G305100
[e_value] => 1.7e-143
[bit_score] => 513.5
[alignment_length] => 334
[identity_percentage] => 76.0
[species] => tca
[common_name] => Theobroma cacao
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Os04g0118100] => Array
(
[gene_id] => Os04g0118100
[e_value] => 2.8e-143
[bit_score] => 512.7
[alignment_length] => 427
[identity_percentage] => 60.2
[species] => osa
[common_name] => Oryza sativa ssp. japonica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Cfa021204] => Array
(
[gene_id] => Cfa021204
[e_value] => 1.8e-137
[bit_score] => 493.4
[alignment_length] => 424
[identity_percentage] => 61.6
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Dinv40274] => Array
(
[gene_id] => Dinv40274
[e_value] => 1.7e-135
[bit_score] => 486.9
[alignment_length] => 428
[identity_percentage] => 61.0
[species] => din
[common_name] => Davidia involucrata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Os04g0117900] => Array
(
[gene_id] => Os04g0117900
[e_value] => 2.9e-132
[bit_score] => 476.1
[alignment_length] => 427
[identity_percentage] => 57.1
[species] => osa
[common_name] => Oryza sativa ssp. japonica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Nn3g18286] => Array
(
[gene_id] => Nn3g18286
[e_value] => 3.3e-131
[bit_score] => 472.6
[alignment_length] => 429
[identity_percentage] => 55.7
[species] => nnu
[common_name] => Nelumbo nucifera
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[QL03p005878] => Array
(
[gene_id] => QL03p005878
[e_value] => 2.1e-130
[bit_score] => 469.9
[alignment_length] => 300
[identity_percentage] => 75.3
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[QL03p006480] => Array
(
[gene_id] => QL03p006480
[e_value] => 2.1e-130
[bit_score] => 469.9
[alignment_length] => 300
[identity_percentage] => 75.3
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MD00G1147100] => Array
(
[gene_id] => MD00G1147100
[e_value] => 4.0e-129
[bit_score] => 465.7
[alignment_length] => 390
[identity_percentage] => 61.3
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[SEGI_22675] => Array
(
[gene_id] => SEGI_22675
[e_value] => 4.0e-129
[bit_score] => 465.7
[alignment_length] => 429
[identity_percentage] => 56.6
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[unitig_899.g15039] => Array
(
[gene_id] => unitig_899.g15039
[e_value] => 1.2e-128
[bit_score] => 464.2
[alignment_length] => 352
[identity_percentage] => 67.6
[species] => ugi
[common_name] => Utricularia gibba
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Nn4g24242] => Array
(
[gene_id] => Nn4g24242
[e_value] => 4.4e-128
[bit_score] => 462.2
[alignment_length] => 429
[identity_percentage] => 53.4
[species] => nnu
[common_name] => Nelumbo nucifera
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[ATR0564G362] => Array
(
[gene_id] => ATR0564G362
[e_value] => 1.7e-127
[bit_score] => 460.3
[alignment_length] => 429
[identity_percentage] => 55.0
[species] => atr
[common_name] => Amborella trichopoda
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[COL.COLO4_13496] => Array
(
[gene_id] => COL.COLO4_13496
[e_value] => 3.2e-126
[bit_score] => 456.1
[alignment_length] => 442
[identity_percentage] => 55.4
[species] => col
[common_name] => Corchorus olitorius
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Actinidia28137] => Array
(
[gene_id] => Actinidia28137
[e_value] => 1.6e-125
[bit_score] => 453.8
[alignment_length] => 426
[identity_percentage] => 51.4
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Dinv04127] => Array
(
[gene_id] => Dinv04127
[e_value] => 1.6e-125
[bit_score] => 453.8
[alignment_length] => 428
[identity_percentage] => 53.0
[species] => din
[common_name] => Davidia involucrata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Actinidia13183] => Array
(
[gene_id] => Actinidia13183
[e_value] => 2.0e-125
[bit_score] => 453.4
[alignment_length] => 377
[identity_percentage] => 64.2
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CANSAT80G2848] => Array
(
[gene_id] => CANSAT80G2848
[e_value] => 2.7e-125
[bit_score] => 453.0
[alignment_length] => 427
[identity_percentage] => 52.5
[species] => cansat
[common_name] => Cannabis sativa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Pp3c7_6470] => Array
(
[gene_id] => Pp3c7_6470
[e_value] => 6.0e-125
[bit_score] => 451.8
[alignment_length] => 399
[identity_percentage] => 56.6
[species] => ppa
[common_name] => Physcomitrium patens
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Hma1.2p1_0669F.1_g200140] => Array
(
[gene_id] => Hma1.2p1_0669F.1_g200140
[e_value] => 1.0e-124
[bit_score] => 451.1
[alignment_length] => 428
[identity_percentage] => 53.0
[species] => hma
[common_name] => Hydrangea macrophylla
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Dinv04131] => Array
(
[gene_id] => Dinv04131
[e_value] => 1.7e-124
[bit_score] => 450.3
[alignment_length] => 428
[identity_percentage] => 53.0
[species] => din
[common_name] => Davidia involucrata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Phvul.007G180900] => Array
(
[gene_id] => Phvul.007G180900
[e_value] => 2.3e-124
[bit_score] => 449.9
[alignment_length] => 303
[identity_percentage] => 72.3
[species] => pvu
[common_name] => Phaseolus vulgaris
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[TAR374G1119] => Array
(
[gene_id] => TAR374G1119
[e_value] => 2.3e-124
[bit_score] => 449.9
[alignment_length] => 427
[identity_percentage] => 53.6
[species] => tar
[common_name] => Trochodendron aralioides
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Atru.chr9.1733] => Array
(
[gene_id] => Atru.chr9.1733
[e_value] => 3.0e-124
[bit_score] => 449.5
[alignment_length] => 426
[identity_percentage] => 52.3
[species] => acertr
[common_name] => Acer truncatum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[FAN18G0790] => Array
(
[gene_id] => FAN18G0790
[e_value] => 1.1e-123
[bit_score] => 447.6
[alignment_length] => 429
[identity_percentage] => 53.1
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Ciclev10007714m.g] => Array
(
[gene_id] => Ciclev10007714m.g
[e_value] => 1.5e-123
[bit_score] => 447.2
[alignment_length] => 427
[identity_percentage] => 53.4
[species] => ccl
[common_name] => Citrus clementina
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[FAN08G1056] => Array
(
[gene_id] => FAN08G1056
[e_value] => 1.5e-123
[bit_score] => 447.2
[alignment_length] => 429
[identity_percentage] => 52.9
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[FvH4_5g17380] => Array
(
[gene_id] => FvH4_5g17380
[e_value] => 1.9e-123
[bit_score] => 446.8
[alignment_length] => 429
[identity_percentage] => 53.1
[species] => fve
[common_name] => Fragaria vesca
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Pp3c21_15890] => Array
(
[gene_id] => Pp3c21_15890
[e_value] => 1.9e-123
[bit_score] => 446.8
[alignment_length] => 427
[identity_percentage] => 53.2
[species] => ppa
[common_name] => Physcomitrium patens
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CSS0018609] => Array
(
[gene_id] => CSS0018609
[e_value] => 2.5e-123
[bit_score] => 446.4
[alignment_length] => 426
[identity_percentage] => 52.3
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Prupe.5G233600] => Array
(
[gene_id] => Prupe.5G233600
[e_value] => 2.5e-123
[bit_score] => 446.4
[alignment_length] => 427
[identity_percentage] => 53.2
[species] => ppe
[common_name] => Prunus persica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CSS0011156] => Array
(
[gene_id] => CSS0011156
[e_value] => 3.3e-123
[bit_score] => 446.0
[alignment_length] => 426
[identity_percentage] => 52.3
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CiPaw.15G143400] => Array
(
[gene_id] => CiPaw.15G143400
[e_value] => 4.3e-123
[bit_score] => 445.7
[alignment_length] => 427
[identity_percentage] => 52.0
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MD06G1227100] => Array
(
[gene_id] => MD06G1227100
[e_value] => 9.5e-123
[bit_score] => 444.5
[alignment_length] => 427
[identity_percentage] => 52.9
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Actinidia35128] => Array
(
[gene_id] => Actinidia35128
[e_value] => 1.6e-122
[bit_score] => 443.7
[alignment_length] => 426
[identity_percentage] => 52.8
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MD14G1236500] => Array
(
[gene_id] => MD14G1236500
[e_value] => 2.1e-122
[bit_score] => 443.4
[alignment_length] => 427
[identity_percentage] => 53.2
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Mapoly0084s0045] => Array
(
[gene_id] => Mapoly0084s0045
[e_value] => 4.7e-122
[bit_score] => 442.2
[alignment_length] => 440
[identity_percentage] => 51.1
[species] => mpo
[common_name] => Marchantia polymorpha
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Pp3c19_12600] => Array
(
[gene_id] => Pp3c19_12600
[e_value] => 4.7e-122
[bit_score] => 442.2
[alignment_length] => 419
[identity_percentage] => 54.9
[species] => ppa
[common_name] => Physcomitrium patens
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[RcHm_v2.0_Chr7g0178361] => Array
(
[gene_id] => RcHm_v2.0_Chr7g0178361
[e_value] => 6.2e-122
[bit_score] => 441.8
[alignment_length] => 429
[identity_percentage] => 52.0
[species] => rch
[common_name] => Rosa chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Glyma.05G246300] => Array
(
[gene_id] => Glyma.05G246300
[e_value] => 8.0e-122
[bit_score] => 441.4
[alignment_length] => 427
[identity_percentage] => 52.5
[species] => gma
[common_name] => Glycine max
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[GSVIVG01008433001] => Array
(
[gene_id] => GSVIVG01008433001
[e_value] => 8.0e-122
[bit_score] => 441.4
[alignment_length] => 427
[identity_percentage] => 52.2
[species] => vvi
[common_name] => Vitis vinifera
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[QL10p029608] => Array
(
[gene_id] => QL10p029608
[e_value] => 1.1e-121
[bit_score] => 441.0
[alignment_length] => 427
[identity_percentage] => 52.2
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[FAN13G2361] => Array
(
[gene_id] => FAN13G2361
[e_value] => 1.4e-121
[bit_score] => 440.7
[alignment_length] => 429
[identity_percentage] => 52.7
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Potri.015G038600] => Array
(
[gene_id] => Potri.015G038600
[e_value] => 1.8e-121
[bit_score] => 440.3
[alignment_length] => 425
[identity_percentage] => 52.9
[species] => ptr
[common_name] => Populus trichocarpa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Phvul.002G330000] => Array
(
[gene_id] => Phvul.002G330000
[e_value] => 2.3e-121
[bit_score] => 439.9
[alignment_length] => 428
[identity_percentage] => 51.9
[species] => pvu
[common_name] => Phaseolus vulgaris
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Gohir.D02G197800] => Array
(
[gene_id] => Gohir.D02G197800
[e_value] => 4.0e-121
[bit_score] => 439.1
[alignment_length] => 429
[identity_percentage] => 54.1
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[PSO017G1837] => Array
(
[gene_id] => PSO017G1837
[e_value] => 4.0e-121
[bit_score] => 439.1
[alignment_length] => 427
[identity_percentage] => 53.9
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[PSO781G0108] => Array
(
[gene_id] => PSO781G0108
[e_value] => 4.0e-121
[bit_score] => 439.1
[alignment_length] => 429
[identity_percentage] => 53.1
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Duzib132G0694] => Array
(
[gene_id] => Duzib132G0694
[e_value] => 5.2e-121
[bit_score] => 438.7
[alignment_length] => 431
[identity_percentage] => 54.3
[species] => dzi
[common_name] => Durio zibethinus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[ECA233G3392] => Array
(
[gene_id] => ECA233G3392
[e_value] => 5.2e-121
[bit_score] => 438.7
[alignment_length] => 428
[identity_percentage] => 52.6
[species] => eca
[common_name] => Erigeron canadensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Gohir.A11G003100] => Array
(
[gene_id] => Gohir.A11G003100
[e_value] => 5.2e-121
[bit_score] => 438.7
[alignment_length] => 427
[identity_percentage] => 51.3
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[FAN04G0115] => Array
(
[gene_id] => FAN04G0115
[e_value] => 6.8e-121
[bit_score] => 438.3
[alignment_length] => 429
[identity_percentage] => 52.2
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[THA.LOC104820350] => Array
(
[gene_id] => THA.LOC104820350
[e_value] => 6.8e-121
[bit_score] => 438.3
[alignment_length] => 429
[identity_percentage] => 50.8
[species] => tha
[common_name] => Tarenaya hassleriana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MBI05_g39043_MAGBIO] => Array
(
[gene_id] => MBI05_g39043_MAGBIO
[e_value] => 1.2e-120
[bit_score] => 437.6
[alignment_length] => 436
[identity_percentage] => 53.0
[species] => mbi
[common_name] => Magnolia biondii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Cc04_g06250] => Array
(
[gene_id] => Cc04_g06250
[e_value] => 2.6e-120
[bit_score] => 436.4
[alignment_length] => 427
[identity_percentage] => 51.5
[species] => ccan
[common_name] => Coffea canephora
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CiPaw.16G093500] => Array
(
[gene_id] => CiPaw.16G093500
[e_value] => 3.4e-120
[bit_score] => 436.0
[alignment_length] => 427
[identity_percentage] => 51.3
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[PSO541G2392] => Array
(
[gene_id] => PSO541G2392
[e_value] => 4.4e-120
[bit_score] => 435.6
[alignment_length] => 429
[identity_percentage] => 52.7
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Cpa.g.sc3.396] => Array
(
[gene_id] => Cpa.g.sc3.396
[e_value] => 5.8e-120
[bit_score] => 435.3
[alignment_length] => 426
[identity_percentage] => 50.9
[species] => cpa
[common_name] => Carica papaya
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Gohir.D11G002700] => Array
(
[gene_id] => Gohir.D11G002700
[e_value] => 5.8e-120
[bit_score] => 435.3
[alignment_length] => 427
[identity_percentage] => 51.3
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Gorai.007G003700] => Array
(
[gene_id] => Gorai.007G003700
[e_value] => 5.8e-120
[bit_score] => 435.3
[alignment_length] => 427
[identity_percentage] => 51.1
[species] => gra
[common_name] => Gossypium raimondii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lalb_Chr05g0221661] => Array
(
[gene_id] => Lalb_Chr05g0221661
[e_value] => 5.8e-120
[bit_score] => 435.3
[alignment_length] => 429
[identity_percentage] => 50.3
[species] => lal
[common_name] => Lupinus albus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MBI12_g33080_MAGBIO] => Array
(
[gene_id] => MBI12_g33080_MAGBIO
[e_value] => 5.8e-120
[bit_score] => 435.3
[alignment_length] => 427
[identity_percentage] => 52.7
[species] => mbi
[common_name] => Magnolia biondii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Sed0010693] => Array
(
[gene_id] => Sed0010693
[e_value] => 7.5e-120
[bit_score] => 434.9
[alignment_length] => 427
[identity_percentage] => 51.3
[species] => sed
[common_name] => Sechium edule
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lj5A239G80] => Array
(
[gene_id] => Lj5A239G80
[e_value] => 9.8e-120
[bit_score] => 434.5
[alignment_length] => 426
[identity_percentage] => 52.8
[species] => lonja
[common_name] => Lonicera japonica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[HanXRQChr05g0142641] => Array
(
[gene_id] => HanXRQChr05g0142641
[e_value] => 1.3e-119
[bit_score] => 434.1
[alignment_length] => 425
[identity_percentage] => 52.2
[species] => han
[common_name] => Helianthus annuus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[TPR.G1418] => Array
(
[gene_id] => TPR.G1418
[e_value] => 1.3e-119
[bit_score] => 434.1
[alignment_length] => 427
[identity_percentage] => 51.3
[species] => tpr
[common_name] => Trifolium pratense
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[TAR628G1222] => Array
(
[gene_id] => TAR628G1222
[e_value] => 1.3e-119
[bit_score] => 434.1
[alignment_length] => 430
[identity_percentage] => 53.5
[species] => tar
[common_name] => Trochodendron aralioides
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[AL3G31130] => Array
(
[gene_id] => AL3G31130
[e_value] => 2.2e-119
[bit_score] => 433.3
[alignment_length] => 422
[identity_percentage] => 50.7
[species] => aly
[common_name] => Arabidopsis lyrata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CARHR093290] => Array
(
[gene_id] => CARHR093290
[e_value] => 2.2e-119
[bit_score] => 433.3
[alignment_length] => 426
[identity_percentage] => 49.1
[species] => chi
[common_name] => Cardamine hirsuta
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Ca_17191_v3] => Array
(
[gene_id] => Ca_17191_v3
[e_value] => 2.2e-119
[bit_score] => 433.3
[alignment_length] => 427
[identity_percentage] => 50.4
[species] => car
[common_name] => Cicer arietinum L.
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[HanXRQChr13g0420761] => Array
(
[gene_id] => HanXRQChr13g0420761
[e_value] => 2.2e-119
[bit_score] => 433.3
[alignment_length] => 424
[identity_percentage] => 52.4
[species] => han
[common_name] => Helianthus annuus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lj2g0027653] => Array
(
[gene_id] => Lj2g0027653
[e_value] => 2.2e-119
[bit_score] => 433.3
[alignment_length] => 427
[identity_percentage] => 50.6
[species] => lja
[common_name] => Lotus japonicus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MSTRG.9304] => Array
(
[gene_id] => MSTRG.9304
[e_value] => 3.7e-119
[bit_score] => 432.6
[alignment_length] => 428
[identity_percentage] => 48.8
[species] => ama
[common_name] => Avicennia marina
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Aa31LG8G4830] => Array
(
[gene_id] => Aa31LG8G4830
[e_value] => 4.9e-119
[bit_score] => 432.2
[alignment_length] => 437
[identity_percentage] => 49.7
[species] => aar
[common_name] => Aethionema arabicum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Haze_10723] => Array
(
[gene_id] => Haze_10723
[e_value] => 4.9e-119
[bit_score] => 432.2
[alignment_length] => 432
[identity_percentage] => 52.3
[species] => cav
[common_name] => Corylus avellana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Gorai.005G221100] => Array
(
[gene_id] => Gorai.005G221100
[e_value] => 4.9e-119
[bit_score] => 432.2
[alignment_length] => 429
[identity_percentage] => 53.8
[species] => gra
[common_name] => Gossypium raimondii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Solyc03g118690.4] => Array
(
[gene_id] => Solyc03g118690.4
[e_value] => 6.4e-119
[bit_score] => 431.8
[alignment_length] => 428
[identity_percentage] => 50.9
[species] => sly
[common_name] => Solanum lycopersicum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Manes.06G006100] => Array
(
[gene_id] => Manes.06G006100
[e_value] => 8.3e-119
[bit_score] => 431.4
[alignment_length] => 426
[identity_percentage] => 50.7
[species] => mes
[common_name] => Manihot esculenta
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Thecc.03G056700] => Array
(
[gene_id] => Thecc.03G056700
[e_value] => 8.3e-119
[bit_score] => 431.4
[alignment_length] => 427
[identity_percentage] => 50.8
[species] => tca
[common_name] => Theobroma cacao
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Zm00001eb109510] => Array
(
[gene_id] => Zm00001eb109510
[e_value] => 8.3e-119
[bit_score] => 431.4
[alignment_length] => 433
[identity_percentage] => 54.3
[species] => zma
[common_name] => Zea mays
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Nn5g30089] => Array
(
[gene_id] => Nn5g30089
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[bit_score] => 431.0
[alignment_length] => 429
[identity_percentage] => 52.4
[species] => nnu
[common_name] => Nelumbo nucifera
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[PSO478G3507] => Array
(
[gene_id] => PSO478G3507
[e_value] => 1.1e-118
[bit_score] => 431.0
[alignment_length] => 427
[identity_percentage] => 53.2
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CAN.G843.55] => Array
(
[gene_id] => CAN.G843.55
[e_value] => 1.4e-118
[bit_score] => 430.6
[alignment_length] => 429
[identity_percentage] => 50.1
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CsaV3_1G004380] => Array
(
[gene_id] => CsaV3_1G004380
[e_value] => 1.4e-118
[bit_score] => 430.6
[alignment_length] => 427
[identity_percentage] => 50.8
[species] => csa
[common_name] => Cucumis sativus L.
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Thecc.02G138200] => Array
(
[gene_id] => Thecc.02G138200
[e_value] => 1.4e-118
[bit_score] => 430.6
[alignment_length] => 429
[identity_percentage] => 53.4
[species] => tca
[common_name] => Theobroma cacao
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Thhalv10020361m.g] => Array
(
[gene_id] => Thhalv10020361m.g
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[bit_score] => 430.3
[alignment_length] => 422
[identity_percentage] => 50.2
[species] => esa
[common_name] => Eutrema salsugineum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Psat4g001480] => Array
(
[gene_id] => Psat4g001480
[e_value] => 2.4e-118
[bit_score] => 429.9
[alignment_length] => 428
[identity_percentage] => 50.9
[species] => psa
[common_name] => Pisum sativum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BraA05t22016Z] => Array
(
[gene_id] => BraA05t22016Z
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[bit_score] => 429.5
[alignment_length] => 422
[identity_percentage] => 50.2
[species] => bra
[common_name] => Brassica rapa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Dinv24185] => Array
(
[gene_id] => Dinv24185
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[bit_score] => 429.5
[alignment_length] => 429
[identity_percentage] => 52.4
[species] => din
[common_name] => Davidia involucrata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Eucgr.I02661] => Array
(
[gene_id] => Eucgr.I02661
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[bit_score] => 429.5
[alignment_length] => 427
[identity_percentage] => 52.5
[species] => egr
[common_name] => Eucalyptus grandis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[AT3G17970] => Array
(
[gene_id] => AT3G17970
[e_value] => 4.1e-118
[bit_score] => 429.1
[alignment_length] => 422
[identity_percentage] => 50.2
[species] => ath
[common_name] => Arabidopsis thaliana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Gohir.A03G174600] => Array
(
[gene_id] => Gohir.A03G174600
[e_value] => 4.1e-118
[bit_score] => 429.1
[alignment_length] => 429
[identity_percentage] => 53.1
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[TWI81G1069] => Array
(
[gene_id] => TWI81G1069
[e_value] => 5.4e-118
[bit_score] => 428.7
[alignment_length] => 426
[identity_percentage] => 50.7
[species] => twi
[common_name] => Tripterygium wilfordii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MSTRG.4580] => Array
(
[gene_id] => MSTRG.4580
[e_value] => 7.1e-118
[bit_score] => 428.3
[alignment_length] => 429
[identity_percentage] => 48.3
[species] => ama
[common_name] => Avicennia marina
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Cfa005584] => Array
(
[gene_id] => Cfa005584
[e_value] => 7.1e-118
[bit_score] => 428.3
[alignment_length] => 434
[identity_percentage] => 51.6
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Medtr8g107280] => Array
(
[gene_id] => Medtr8g107280
[e_value] => 7.1e-118
[bit_score] => 428.3
[alignment_length] => 428
[identity_percentage] => 50.5
[species] => mtr
[common_name] => Medicago truncatula
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Carub.0003s1769] => Array
(
[gene_id] => Carub.0003s1769
[e_value] => 9.2e-118
[bit_score] => 427.9
[alignment_length] => 422
[identity_percentage] => 50.7
[species] => cru
[common_name] => Capsella rubella
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lalb_Chr16g0387011] => Array
(
[gene_id] => Lalb_Chr16g0387011
[e_value] => 9.2e-118
[bit_score] => 427.9
[alignment_length] => 426
[identity_percentage] => 50.2
[species] => lal
[common_name] => Lupinus albus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[PGR083G1224] => Array
(
[gene_id] => PGR083G1224
[e_value] => 9.2e-118
[bit_score] => 427.9
[alignment_length] => 428
[identity_percentage] => 51.2
[species] => pgr
[common_name] => Punica granatum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Sopen03g037650] => Array
(
[gene_id] => Sopen03g037650
[e_value] => 9.2e-118
[bit_score] => 427.9
[alignment_length] => 428
[identity_percentage] => 50.2
[species] => spe
[common_name] => Solanum pennellii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[COL.COLO4_04375] => Array
(
[gene_id] => COL.COLO4_04375
[e_value] => 1.6e-117
[bit_score] => 427.2
[alignment_length] => 427
[identity_percentage] => 50.1
[species] => col
[common_name] => Corchorus olitorius
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BcaB06g25863] => Array
(
[gene_id] => BcaB06g25863
[e_value] => 2.1e-117
[bit_score] => 426.8
[alignment_length] => 422
[identity_percentage] => 50.0
[species] => bca
[common_name] => Brassica carinata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lj5C552T10] => Array
(
[gene_id] => Lj5C552T10
[e_value] => 2.1e-117
[bit_score] => 426.8
[alignment_length] => 343
[identity_percentage] => 64.7
[species] => lonja
[common_name] => Lonicera japonica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Potri.012G046900] => Array
(
[gene_id] => Potri.012G046900
[e_value] => 2.1e-117
[bit_score] => 426.8
[alignment_length] => 425
[identity_percentage] => 50.6
[species] => ptr
[common_name] => Populus trichocarpa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[A05p31840] => Array
(
[gene_id] => A05p31840
[e_value] => 2.7e-117
[bit_score] => 426.4
[alignment_length] => 422
[identity_percentage] => 50.2
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Hma1.2p1_0522F.1_g171690] => Array
(
[gene_id] => Hma1.2p1_0522F.1_g171690
[e_value] => 7.8e-117
[bit_score] => 424.9
[alignment_length] => 429
[identity_percentage] => 52.0
[species] => hma
[common_name] => Hydrangea macrophylla
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[C05p48330] => Array
(
[gene_id] => C05p48330
[e_value] => 1.3e-116
[bit_score] => 424.1
[alignment_length] => 422
[identity_percentage] => 50.0
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CDE11G0307] => Array
(
[gene_id] => CDE11G0307
[e_value] => 1.3e-116
[bit_score] => 424.1
[alignment_length] => 427
[identity_percentage] => 50.6
[species] => cde
[common_name] => Ceratophyllum demersum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Rhsim08G0126200] => Array
(
[gene_id] => Rhsim08G0126200
[e_value] => 1.3e-116
[bit_score] => 424.1
[alignment_length] => 426
[identity_percentage] => 51.4
[species] => rsi
[common_name] => Rhododendron simsii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CSS0036070] => Array
(
[gene_id] => CSS0036070
[e_value] => 1.7e-116
[bit_score] => 423.7
[alignment_length] => 423
[identity_percentage] => 50.8
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[PGSC0003DMG400005752] => Array
(
[gene_id] => PGSC0003DMG400005752
[e_value] => 2.3e-116
[bit_score] => 423.3
[alignment_length] => 428
[identity_percentage] => 50.5
[species] => stu
[common_name] => Solanum tuberosum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CiPaw.05G034800] => Array
(
[gene_id] => CiPaw.05G034800
[e_value] => 3.0e-116
[bit_score] => 422.9
[alignment_length] => 429
[identity_percentage] => 51.5
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lj6g0024241] => Array
(
[gene_id] => Lj6g0024241
[e_value] => 3.0e-116
[bit_score] => 422.9
[alignment_length] => 430
[identity_percentage] => 51.9
[species] => lja
[common_name] => Lotus japonicus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BcaC05g28730] => Array
(
[gene_id] => BcaC05g28730
[e_value] => 3.9e-116
[bit_score] => 422.5
[alignment_length] => 422
[identity_percentage] => 50.0
[species] => bca
[common_name] => Brassica carinata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BolC5t33567H] => Array
(
[gene_id] => BolC5t33567H
[e_value] => 3.9e-116
[bit_score] => 422.5
[alignment_length] => 422
[identity_percentage] => 50.0
[species] => bol
[common_name] => Brassica oleracea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[VMungo0251G0933] => Array
(
[gene_id] => VMungo0251G0933
[e_value] => 3.9e-116
[bit_score] => 422.5
[alignment_length] => 427
[identity_percentage] => 50.4
[species] => vmu
[common_name] => Vigna mungo
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lsat_1_v5_gn_8_301] => Array
(
[gene_id] => Lsat_1_v5_gn_8_301
[e_value] => 5.1e-116
[bit_score] => 422.2
[alignment_length] => 429
[identity_percentage] => 49.2
[species] => lsa
[common_name] => Lactuca sativa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Aqoxy3G00064] => Array
(
[gene_id] => Aqoxy3G00064
[e_value] => 6.6e-116
[bit_score] => 421.8
[alignment_length] => 429
[identity_percentage] => 50.6
[species] => aox
[common_name] => Aquilegia oxysepala
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Eucgr.L03224] => Array
(
[gene_id] => Eucgr.L03224
[e_value] => 8.6e-116
[bit_score] => 421.4
[alignment_length] => 302
[identity_percentage] => 67.2
[species] => egr
[common_name] => Eucalyptus grandis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Glyma.08G178700] => Array
(
[gene_id] => Glyma.08G178700
[e_value] => 1.1e-115
[bit_score] => 421.0
[alignment_length] => 424
[identity_percentage] => 52.1
[species] => gma
[common_name] => Glycine max
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Actinidia28053] => Array
(
[gene_id] => Actinidia28053
[e_value] => 1.5e-115
[bit_score] => 420.6
[alignment_length] => 425
[identity_percentage] => 51.8
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[A03p40480] => Array
(
[gene_id] => A03p40480
[e_value] => 1.5e-115
[bit_score] => 420.6
[alignment_length] => 422
[identity_percentage] => 49.8
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BraA03t13206Z] => Array
(
[gene_id] => BraA03t13206Z
[e_value] => 1.5e-115
[bit_score] => 420.6
[alignment_length] => 422
[identity_percentage] => 49.8
[species] => bra
[common_name] => Brassica rapa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[C03p49320] => Array
(
[gene_id] => C03p49320
[e_value] => 2.5e-115
[bit_score] => 419.9
[alignment_length] => 422
[identity_percentage] => 49.8
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lj5A560T9] => Array
(
[gene_id] => Lj5A560T9
[e_value] => 2.5e-115
[bit_score] => 419.9
[alignment_length] => 342
[identity_percentage] => 62.3
[species] => lonja
[common_name] => Lonicera japonica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lj5C158T11] => Array
(
[gene_id] => Lj5C158T11
[e_value] => 3.3e-115
[bit_score] => 419.5
[alignment_length] => 445
[identity_percentage] => 49.0
[species] => lonja
[common_name] => Lonicera japonica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Sp3g16090] => Array
(
[gene_id] => Sp3g16090
[e_value] => 3.3e-115
[bit_score] => 419.5
[alignment_length] => 422
[identity_percentage] => 49.1
[species] => spa
[common_name] => Schrenkiella parvula
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Nitab4.5_0003401g0010] => Array
(
[gene_id] => Nitab4.5_0003401g0010
[e_value] => 5.6e-115
[bit_score] => 418.7
[alignment_length] => 428
[identity_percentage] => 48.1
[species] => nta
[common_name] => Nicotiana tabacum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[TWI60G0055] => Array
(
[gene_id] => TWI60G0055
[e_value] => 5.6e-115
[bit_score] => 418.7
[alignment_length] => 429
[identity_percentage] => 50.8
[species] => twi
[common_name] => Tripterygium wilfordii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[HanXRQChr03g0067581] => Array
(
[gene_id] => HanXRQChr03g0067581
[e_value] => 7.3e-115
[bit_score] => 418.3
[alignment_length] => 424
[identity_percentage] => 51.9
[species] => han
[common_name] => Helianthus annuus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Rhsim05G0106400] => Array
(
[gene_id] => Rhsim05G0106400
[e_value] => 7.3e-115
[bit_score] => 418.3
[alignment_length] => 429
[identity_percentage] => 52.4
[species] => rsi
[common_name] => Rhododendron simsii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[SalBow1G1366] => Array
(
[gene_id] => SalBow1G1366
[e_value] => 7.3e-115
[bit_score] => 418.3
[alignment_length] => 429
[identity_percentage] => 47.3
[species] => sbo
[common_name] => Salvia bowleyana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Gohir.A12G015200] => Array
(
[gene_id] => Gohir.A12G015200
[e_value] => 9.5e-115
[bit_score] => 417.9
[alignment_length] => 427
[identity_percentage] => 52.0
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[GSVIVG01038788001] => Array
(
[gene_id] => GSVIVG01038788001
[e_value] => 9.5e-115
[bit_score] => 417.9
[alignment_length] => 427
[identity_percentage] => 51.3
[species] => vvi
[common_name] => Vitis vinifera
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[A06p04360] => Array
(
[gene_id] => A06p04360
[e_value] => 1.2e-114
[bit_score] => 417.5
[alignment_length] => 429
[identity_percentage] => 48.3
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BraA06t23640Z] => Array
(
[gene_id] => BraA06t23640Z
[e_value] => 1.2e-114
[bit_score] => 417.5
[alignment_length] => 429
[identity_percentage] => 48.3
[species] => bra
[common_name] => Brassica rapa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BolC3t17222H] => Array
(
[gene_id] => BolC3t17222H
[e_value] => 1.6e-114
[bit_score] => 417.2
[alignment_length] => 422
[identity_percentage] => 49.5
[species] => bol
[common_name] => Brassica oleracea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Duzib068G0977] => Array
(
[gene_id] => Duzib068G0977
[e_value] => 1.6e-114
[bit_score] => 417.2
[alignment_length] => 427
[identity_percentage] => 49.9
[species] => dzi
[common_name] => Durio zibethinus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Gohir.D12G015600] => Array
(
[gene_id] => Gohir.D12G015600
[e_value] => 2.1e-114
[bit_score] => 416.8
[alignment_length] => 427
[identity_percentage] => 52.0
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[DCAR_014505] => Array
(
[gene_id] => DCAR_014505
[e_value] => 3.6e-114
[bit_score] => 416.0
[alignment_length] => 429
[identity_percentage] => 49.0
[species] => dca
[common_name] => Daucus carota
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Oeu026279.1] => Array
(
[gene_id] => Oeu026279.1
[e_value] => 4.7e-114
[bit_score] => 415.6
[alignment_length] => 429
[identity_percentage] => 49.2
[species] => oeu
[common_name] => Olea europaea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[SMO338G0018] => Array
(
[gene_id] => SMO338G0018
[e_value] => 6.2e-114
[bit_score] => 415.2
[alignment_length] => 455
[identity_percentage] => 48.6
[species] => smo
[common_name] => Selaginella moellendorffii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Gorai.008G015700] => Array
(
[gene_id] => Gorai.008G015700
[e_value] => 8.1e-114
[bit_score] => 414.8
[alignment_length] => 427
[identity_percentage] => 52.0
[species] => gra
[common_name] => Gossypium raimondii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Hund02255] => Array
(
[gene_id] => Hund02255
[e_value] => 8.1e-114
[bit_score] => 414.8
[alignment_length] => 426
[identity_percentage] => 50.2
[species] => sun
[common_name] => Selenicereus undatus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BcaC01g03719] => Array
(
[gene_id] => BcaC01g03719
[e_value] => 1.4e-113
[bit_score] => 414.1
[alignment_length] => 422
[identity_percentage] => 49.3
[species] => bca
[common_name] => Brassica carinata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[SGA_v2.0_scaffold36G14382] => Array
(
[gene_id] => SGA_v2.0_scaffold36G14382
[e_value] => 1.8e-113
[bit_score] => 413.7
[alignment_length] => 429
[identity_percentage] => 47.6
[species] => sas
[common_name] => Striga asiatica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Glyma.15G053800] => Array
(
[gene_id] => Glyma.15G053800
[e_value] => 2.3e-113
[bit_score] => 413.3
[alignment_length] => 424
[identity_percentage] => 51.7
[species] => gma
[common_name] => Glycine max
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Ah.10g032670] => Array
(
[gene_id] => Ah.10g032670
[e_value] => 3.1e-113
[bit_score] => 412.9
[alignment_length] => 430
[identity_percentage] => 48.6
[species] => amhyb
[common_name] => Amaranthus hybridus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Manes.14G171400] => Array
(
[gene_id] => Manes.14G171400
[e_value] => 3.1e-113
[bit_score] => 412.9
[alignment_length] => 426
[identity_percentage] => 50.2
[species] => mes
[common_name] => Manihot esculenta
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Manes.07G031700] => Array
(
[gene_id] => Manes.07G031700
[e_value] => 6.8e-113
[bit_score] => 411.8
[alignment_length] => 429
[identity_percentage] => 50.3
[species] => mes
[common_name] => Manihot esculenta
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Sc12g0007230] => Array
(
[gene_id] => Sc12g0007230
[e_value] => 8.9e-113
[bit_score] => 411.4
[alignment_length] => 428
[identity_percentage] => 49.3
[species] => sci
[common_name] => Simmondsia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lsat_1_v5_gn_9_117041] => Array
(
[gene_id] => Lsat_1_v5_gn_9_117041
[e_value] => 1.2e-112
[bit_score] => 411.0
[alignment_length] => 428
[identity_percentage] => 51.6
[species] => lsa
[common_name] => Lactuca sativa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Atru.chr6.1140] => Array
(
[gene_id] => Atru.chr6.1140
[e_value] => 2.0e-112
[bit_score] => 410.2
[alignment_length] => 429
[identity_percentage] => 49.7
[species] => acertr
[common_name] => Acer truncatum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[PGR142G1649] => Array
(
[gene_id] => PGR142G1649
[e_value] => 2.0e-112
[bit_score] => 410.2
[alignment_length] => 438
[identity_percentage] => 49.8
[species] => pgr
[common_name] => Punica granatum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[arahy.Tifrunner.gnm1.ann1.60IM8Z] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.60IM8Z
[e_value] => 3.4e-112
[bit_score] => 409.5
[alignment_length] => 427
[identity_percentage] => 50.8
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Cc02_g21470] => Array
(
[gene_id] => Cc02_g21470
[e_value] => 3.4e-112
[bit_score] => 409.5
[alignment_length] => 429
[identity_percentage] => 48.7
[species] => ccan
[common_name] => Coffea canephora
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MELO3C018637.2] => Array
(
[gene_id] => MELO3C018637.2
[e_value] => 5.8e-112
[bit_score] => 408.7
[alignment_length] => 429
[identity_percentage] => 50.6
[species] => cme
[common_name] => Cucumis melo
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Eucgr.K02274] => Array
(
[gene_id] => Eucgr.K02274
[e_value] => 7.6e-112
[bit_score] => 408.3
[alignment_length] => 427
[identity_percentage] => 49.2
[species] => egr
[common_name] => Eucalyptus grandis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[C06p03170] => Array
(
[gene_id] => C06p03170
[e_value] => 9.9e-112
[bit_score] => 407.9
[alignment_length] => 429
[identity_percentage] => 47.6
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lalb_Chr05g0217541] => Array
(
[gene_id] => Lalb_Chr05g0217541
[e_value] => 9.9e-112
[bit_score] => 407.9
[alignment_length] => 435
[identity_percentage] => 50.3
[species] => lal
[common_name] => Lupinus albus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[vmacro19937] => Array
(
[gene_id] => vmacro19937
[e_value] => 2.2e-111
[bit_score] => 406.8
[alignment_length] => 491
[identity_percentage] => 46.8
[species] => vma
[common_name] => Vaccinium macrocarpon
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[HPP92_004126] => Array
(
[gene_id] => HPP92_004126
[e_value] => 2.9e-111
[bit_score] => 406.4
[alignment_length] => 428
[identity_percentage] => 48.4
[species] => vpl
[common_name] => Vanilla planifolia
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BolC6t35435H] => Array
(
[gene_id] => BolC6t35435H
[e_value] => 3.7e-111
[bit_score] => 406.0
[alignment_length] => 429
[identity_percentage] => 47.3
[species] => bol
[common_name] => Brassica oleracea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BcaB07g33744] => Array
(
[gene_id] => BcaB07g33744
[e_value] => 6.4e-111
[bit_score] => 405.2
[alignment_length] => 429
[identity_percentage] => 47.3
[species] => bca
[common_name] => Brassica carinata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Migut.B00605] => Array
(
[gene_id] => Migut.B00605
[e_value] => 8.3e-111
[bit_score] => 404.8
[alignment_length] => 431
[identity_percentage] => 49.0
[species] => egut
[common_name] => Erythranthe guttata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lj4g0007471] => Array
(
[gene_id] => Lj4g0007471
[e_value] => 8.3e-111
[bit_score] => 404.8
[alignment_length] => 427
[identity_percentage] => 47.3
[species] => lja
[common_name] => Lotus japonicus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Sc18g0006830] => Array
(
[gene_id] => Sc18g0006830
[e_value] => 8.3e-111
[bit_score] => 404.8
[alignment_length] => 426
[identity_percentage] => 49.3
[species] => sci
[common_name] => Simmondsia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[QL11p021330] => Array
(
[gene_id] => QL11p021330
[e_value] => 1.9e-110
[bit_score] => 403.7
[alignment_length] => 463
[identity_percentage] => 48.6
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CsaV3_7G006560] => Array
(
[gene_id] => CsaV3_7G006560
[e_value] => 3.2e-110
[bit_score] => 402.9
[alignment_length] => 429
[identity_percentage] => 49.7
[species] => csa
[common_name] => Cucumis sativus L.
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Migut.N01072] => Array
(
[gene_id] => Migut.N01072
[e_value] => 4.1e-110
[bit_score] => 402.5
[alignment_length] => 437
[identity_percentage] => 49.7
[species] => egut
[common_name] => Erythranthe guttata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Potri.001G205300] => Array
(
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[e_value] => 5.4e-110
[bit_score] => 402.1
[alignment_length] => 429
[identity_percentage] => 48.5
[species] => ptr
[common_name] => Populus trichocarpa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Peaxi162Scf00003g03547] => Array
(
[gene_id] => Peaxi162Scf00003g03547
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[bit_score] => 400.2
[alignment_length] => 424
[identity_percentage] => 49.1
[species] => pax
[common_name] => Petunia axillaris
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[SGA_v2.0_scaffold45G17317] => Array
(
[gene_id] => SGA_v2.0_scaffold45G17317
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[bit_score] => 399.4
[alignment_length] => 437
[identity_percentage] => 49.2
[species] => sas
[common_name] => Striga asiatica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[VMungo0540G1955] => Array
(
[gene_id] => VMungo0540G1955
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[alignment_length] => 424
[identity_percentage] => 50.2
[species] => vmu
[common_name] => Vigna mungo
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Nitab4.5_0000294g0010] => Array
(
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[bit_score] => 399.1
[alignment_length] => 426
[identity_percentage] => 47.7
[species] => nta
[common_name] => Nicotiana tabacum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Oeu019231.2] => Array
(
[gene_id] => Oeu019231.2
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[bit_score] => 399.1
[alignment_length] => 458
[identity_percentage] => 47.2
[species] => oeu
[common_name] => Olea europaea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[ClCG09G015490] => Array
(
[gene_id] => ClCG09G015490
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[bit_score] => 397.5
[alignment_length] => 429
[identity_percentage] => 49.7
[species] => cla
[common_name] => Citrullus lanatus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Migut.D01540] => Array
(
[gene_id] => Migut.D01540
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[bit_score] => 397.5
[alignment_length] => 428
[identity_percentage] => 46.0
[species] => egut
[common_name] => Erythranthe guttata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Nitab4.5_0004556g0020] => Array
(
[gene_id] => Nitab4.5_0004556g0020
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[alignment_length] => 428
[identity_percentage] => 46.5
[species] => nta
[common_name] => Nicotiana tabacum
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MELO3C017360.2] => Array
(
[gene_id] => MELO3C017360.2
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[bit_score] => 397.1
[alignment_length] => 391
[identity_percentage] => 50.4
[species] => cme
[common_name] => Cucumis melo
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Sed0028182] => Array
(
[gene_id] => Sed0028182
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[bit_score] => 397.1
[alignment_length] => 429
[identity_percentage] => 48.7
[species] => sed
[common_name] => Sechium edule
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Nitab4.5_0002067g0060] => Array
(
[gene_id] => Nitab4.5_0002067g0060
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[bit_score] => 396.7
[alignment_length] => 426
[identity_percentage] => 47.4
[species] => nta
[common_name] => Nicotiana tabacum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[arahy.Tifrunner.gnm1.ann1.WS4LBJ] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.WS4LBJ
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[bit_score] => 394.8
[alignment_length] => 429
[identity_percentage] => 49.4
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Glyma.05G116700] => Array
(
[gene_id] => Glyma.05G116700
[e_value] => 1.9e-107
[bit_score] => 393.7
[alignment_length] => 438
[identity_percentage] => 48.2
[species] => gma
[common_name] => Glycine max
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[EL10Ac5g11565] => Array
(
[gene_id] => EL10Ac5g11565
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[bit_score] => 392.9
[alignment_length] => 439
[identity_percentage] => 44.9
[species] => bvu
[common_name] => Beta vulgaris
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CDE10G0845] => Array
(
[gene_id] => CDE10G0845
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[bit_score] => 392.9
[alignment_length] => 454
[identity_percentage] => 45.8
[species] => cde
[common_name] => Ceratophyllum demersum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lj4g0014215] => Array
(
[gene_id] => Lj4g0014215
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[bit_score] => 392.9
[alignment_length] => 428
[identity_percentage] => 48.6
[species] => lja
[common_name] => Lotus japonicus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MD10G1051400] => Array
(
[gene_id] => MD10G1051400
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[bit_score] => 392.9
[alignment_length] => 412
[identity_percentage] => 49.0
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Sabra12G0032900] => Array
(
[gene_id] => Sabra12G0032900
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[bit_score] => 392.5
[alignment_length] => 455
[identity_percentage] => 45.5
[species] => sbr
[common_name] => Salix brachista
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Sopen10g017560] => Array
(
[gene_id] => Sopen10g017560
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[bit_score] => 392.5
[alignment_length] => 429
[identity_percentage] => 45.9
[species] => spe
[common_name] => Solanum pennellii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Ca_18358_v3] => Array
(
[gene_id] => Ca_18358_v3
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[bit_score] => 391.7
[alignment_length] => 423
[identity_percentage] => 49.9
[species] => car
[common_name] => Cicer arietinum L.
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[SHI19087] => Array
(
[gene_id] => SHI19087
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[bit_score] => 391.7
[alignment_length] => 439
[identity_percentage] => 46.9
[species] => shi
[common_name] => Sapria himalayana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[AUR62010143] => Array
(
[gene_id] => AUR62010143
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[bit_score] => 391.0
[alignment_length] => 475
[identity_percentage] => 45.9
[species] => cqu
[common_name] => Chenopodium quinoa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Oeu046164.2] => Array
(
[gene_id] => Oeu046164.2
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[bit_score] => 390.6
[alignment_length] => 472
[identity_percentage] => 44.9
[species] => oeu
[common_name] => Olea europaea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[TWI59G1224] => Array
(
[gene_id] => TWI59G1224
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[bit_score] => 390.2
[alignment_length] => 446
[identity_percentage] => 48.0
[species] => twi
[common_name] => Tripterygium wilfordii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[ECA240G0103] => Array
(
[gene_id] => ECA240G0103
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[bit_score] => 389.8
[alignment_length] => 436
[identity_percentage] => 47.0
[species] => eca
[common_name] => Erigeron canadensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Phvul.006G206200] => Array
(
[gene_id] => Phvul.006G206200
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[alignment_length] => 429
[identity_percentage] => 49.0
[species] => pvu
[common_name] => Phaseolus vulgaris
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Prupe.8G059900] => Array
(
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[alignment_length] => 432
[identity_percentage] => 49.5
[species] => ppe
[common_name] => Prunus persica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Sabra15G0037500] => Array
(
[gene_id] => Sabra15G0037500
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[bit_score] => 389.8
[alignment_length] => 426
[identity_percentage] => 48.4
[species] => sbr
[common_name] => Salix brachista
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[AL6G19810] => Array
(
[gene_id] => AL6G19810
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[bit_score] => 389.4
[alignment_length] => 430
[identity_percentage] => 47.7
[species] => aly
[common_name] => Arabidopsis lyrata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BcaC08g43058] => Array
(
[gene_id] => BcaC08g43058
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[bit_score] => 389.4
[alignment_length] => 429
[identity_percentage] => 46.6
[species] => bca
[common_name] => Brassica carinata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CARHR203980] => Array
(
[gene_id] => CARHR203980
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[bit_score] => 389.4
[alignment_length] => 430
[identity_percentage] => 47.2
[species] => chi
[common_name] => Cardamine hirsuta
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Thhalv10013019m.g] => Array
(
[gene_id] => Thhalv10013019m.g
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[bit_score] => 388.7
[alignment_length] => 427
[identity_percentage] => 47.3
[species] => esa
[common_name] => Eutrema salsugineum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Rhsim01G0085600] => Array
(
[gene_id] => Rhsim01G0085600
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[bit_score] => 388.3
[alignment_length] => 417
[identity_percentage] => 54.7
[species] => rsi
[common_name] => Rhododendron simsii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[AagrBONN_evm.TU.Sc2ySwM_344.2643] => Array
(
[gene_id] => AagrBONN_evm.TU.Sc2ySwM_344.2643
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[bit_score] => 387.9
[alignment_length] => 424
[identity_percentage] => 49.3
[species] => aag
[common_name] => Anthoceros agrestis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[AT5G09420] => Array
(
[gene_id] => AT5G09420
[e_value] => 1.1e-105
[bit_score] => 387.9
[alignment_length] => 430
[identity_percentage] => 48.1
[species] => ath
[common_name] => Arabidopsis thaliana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Os03g0707900] => Array
(
[gene_id] => Os03g0707900
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[bit_score] => 387.1
[alignment_length] => 425
[identity_percentage] => 46.6
[species] => osa
[common_name] => Oryza sativa ssp. japonica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Solyc10g047300.2] => Array
(
[gene_id] => Solyc10g047300.2
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[bit_score] => 387.1
[alignment_length] => 426
[identity_percentage] => 45.8
[species] => sly
[common_name] => Solanum lycopersicum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[THA.LOC104799946] => Array
(
[gene_id] => THA.LOC104799946
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[bit_score] => 386.7
[alignment_length] => 427
[identity_percentage] => 47.5
[species] => tha
[common_name] => Tarenaya hassleriana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MD05G1044300] => Array
(
[gene_id] => MD05G1044300
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[bit_score] => 386.3
[alignment_length] => 411
[identity_percentage] => 49.1
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Psat7g099080] => Array
(
[gene_id] => Psat7g099080
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[bit_score] => 384.8
[alignment_length] => 423
[identity_percentage] => 49.2
[species] => psa
[common_name] => Pisum sativum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[ClCG06G014290] => Array
(
[gene_id] => ClCG06G014290
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[bit_score] => 382.5
[alignment_length] => 391
[identity_percentage] => 49.9
[species] => cla
[common_name] => Citrullus lanatus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[unitig_27.g24923] => Array
(
[gene_id] => unitig_27.g24923
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[bit_score] => 382.5
[alignment_length] => 391
[identity_percentage] => 49.4
[species] => ugi
[common_name] => Utricularia gibba
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BolC9t59555H] => Array
(
[gene_id] => BolC9t59555H
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[bit_score] => 382.1
[alignment_length] => 427
[identity_percentage] => 47.1
[species] => bol
[common_name] => Brassica oleracea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[VMungo0251G3511] => Array
(
[gene_id] => VMungo0251G3511
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[bit_score] => 382.1
[alignment_length] => 438
[identity_percentage] => 47.7
[species] => vmu
[common_name] => Vigna mungo
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Peaxi162Scf00683g00463] => Array
(
[gene_id] => Peaxi162Scf00683g00463
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[bit_score] => 380.9
[alignment_length] => 448
[identity_percentage] => 45.1
[species] => pax
[common_name] => Petunia axillaris
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[TPR.G34521] => Array
(
[gene_id] => TPR.G34521
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[bit_score] => 380.9
[alignment_length] => 423
[identity_percentage] => 48.5
[species] => tpr
[common_name] => Trifolium pratense
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Medtr4g094205] => Array
(
[gene_id] => Medtr4g094205
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[bit_score] => 380.6
[alignment_length] => 423
[identity_percentage] => 48.2
[species] => mtr
[common_name] => Medicago truncatula
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Sp6g33910] => Array
(
[gene_id] => Sp6g33910
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[bit_score] => 380.2
[alignment_length] => 428
[identity_percentage] => 47.2
[species] => spa
[common_name] => Schrenkiella parvula
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[A10p27860] => Array
(
[gene_id] => A10p27860
[e_value] => 3.8e-103
[bit_score] => 379.4
[alignment_length] => 427
[identity_percentage] => 47.1
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Phvul.002G209800] => Array
(
[gene_id] => Phvul.002G209800
[e_value] => 3.8e-103
[bit_score] => 379.4
[alignment_length] => 438
[identity_percentage] => 47.5
[species] => pvu
[common_name] => Phaseolus vulgaris
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Zm00001eb255310] => Array
(
[gene_id] => Zm00001eb255310
[e_value] => 8.4e-103
[bit_score] => 378.3
[alignment_length] => 432
[identity_percentage] => 46.1
[species] => zma
[common_name] => Zea mays
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Aa31LG3G17590] => Array
(
[gene_id] => Aa31LG3G17590
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[bit_score] => 377.9
[alignment_length] => 429
[identity_percentage] => 46.9
[species] => aar
[common_name] => Aethionema arabicum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Os02g0754500] => Array
(
[gene_id] => Os02g0754500
[e_value] => 1.9e-102
[bit_score] => 377.1
[alignment_length] => 427
[identity_percentage] => 46.6
[species] => osa
[common_name] => Oryza sativa ssp. japonica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Carub.0006s0797] => Array
(
[gene_id] => Carub.0006s0797
[e_value] => 2.4e-102
[bit_score] => 376.7
[alignment_length] => 428
[identity_percentage] => 46.7
[species] => cru
[common_name] => Capsella rubella
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BcaB08g37207] => Array
(
[gene_id] => BcaB08g37207
[e_value] => 4.2e-102
[bit_score] => 375.9
[alignment_length] => 427
[identity_percentage] => 46.4
[species] => bca
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[gf] => Array
(
[HOMFAM] => HOM05D001310
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)
)
[C09p67960] => Array
(
[gene_id] => C09p67960
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[bit_score] => 375.9
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[species] => bna
[common_name] => Brassica napus
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[arahy.Tifrunner.gnm1.ann1.DWV9W6] => Array
(
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[alignment_length] => 383
[identity_percentage] => 50.7
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BcaB08g37206] => Array
(
[gene_id] => BcaB08g37206
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[identity_percentage] => 47.2
[species] => bca
[common_name] => Brassica carinata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CAN.G1.39] => Array
(
[gene_id] => CAN.G1.39
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[bit_score] => 371.3
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[identity_percentage] => 44.6
[species] => can
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[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[AUR62042937] => Array
(
[gene_id] => AUR62042937
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[species] => cqu
[common_name] => Chenopodium quinoa
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[arahy.Tifrunner.gnm1.ann1.LBLS7P] => Array
(
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[alignment_length] => 382
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[species] => arhy
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Haze_18854] => Array
(
[gene_id] => Haze_18854
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[bit_score] => 366.3
[alignment_length] => 590
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[species] => cav
[common_name] => Corylus avellana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[arahy.Tifrunner.gnm1.ann1.DEN2HU] => Array
(
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[species] => arhy
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[arahy.Tifrunner.gnm1.ann1.K2WU28] => Array
(
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[alignment_length] => 403
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[species] => arhy
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[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Hund00067] => Array
(
[gene_id] => Hund00067
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[alignment_length] => 427
[identity_percentage] => 46.1
[species] => sun
[common_name] => Selenicereus undatus
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[arahy.Tifrunner.gnm1.ann1.YX4B4M] => Array
(
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[alignment_length] => 403
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[species] => arhy
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Duzib052G0493] => Array
(
[gene_id] => Duzib052G0493
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[bit_score] => 357.8
[alignment_length] => 429
[identity_percentage] => 47.6
[species] => dzi
[common_name] => Durio zibethinus
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[COL.COLO4_08574] => Array
(
[gene_id] => COL.COLO4_08574
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[bit_score] => 352.8
[alignment_length] => 432
[identity_percentage] => 46.5
[species] => col
[common_name] => Corchorus olitorius
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CBR_g36926] => Array
(
[gene_id] => CBR_g36926
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[bit_score] => 351.7
[alignment_length] => 428
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[species] => cbr
[common_name] => Chara braunii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MBI19_g17587_MAGBIO] => Array
(
[gene_id] => MBI19_g17587_MAGBIO
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[alignment_length] => 227
[identity_percentage] => 74.0
[species] => mbi
[common_name] => Magnolia biondii
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Aqoxy6G00773] => Array
(
[gene_id] => Aqoxy6G00773
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[bit_score] => 343.2
[alignment_length] => 349
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[species] => aox
[common_name] => Aquilegia oxysepala
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[AUR62025790] => Array
(
[gene_id] => AUR62025790
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[bit_score] => 342.8
[alignment_length] => 426
[identity_percentage] => 43.4
[species] => cqu
[common_name] => Chenopodium quinoa
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CSS0021078] => Array
(
[gene_id] => CSS0021078
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[alignment_length] => 339
[identity_percentage] => 53.4
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Potri.013G024200] => Array
(
[gene_id] => Potri.013G024200
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[bit_score] => 341.7
[alignment_length] => 235
[identity_percentage] => 68.9
[species] => ptr
[common_name] => Populus trichocarpa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Sp1g35520] => Array
(
[gene_id] => Sp1g35520
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[bit_score] => 341.7
[alignment_length] => 358
[identity_percentage] => 48.6
[species] => spa
[common_name] => Schrenkiella parvula
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Oeu000249.3] => Array
(
[gene_id] => Oeu000249.3
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[alignment_length] => 478
[identity_percentage] => 42.3
[species] => oeu
[common_name] => Olea europaea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MBI19_g17595_MAGBIO] => Array
(
[gene_id] => MBI19_g17595_MAGBIO
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[bit_score] => 340.5
[alignment_length] => 237
[identity_percentage] => 70.5
[species] => mbi
[common_name] => Magnolia biondii
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CDE05G3325] => Array
(
[gene_id] => CDE05G3325
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[bit_score] => 336.3
[alignment_length] => 342
[identity_percentage] => 50.0
[species] => cde
[common_name] => Ceratophyllum demersum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Duzib205G1371] => Array
(
[gene_id] => Duzib205G1371
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[bit_score] => 332.4
[alignment_length] => 424
[identity_percentage] => 43.4
[species] => dzi
[common_name] => Durio zibethinus
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Sabra01G0158200] => Array
(
[gene_id] => Sabra01G0158200
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[bit_score] => 332.4
[alignment_length] => 577
[identity_percentage] => 36.7
[species] => sbr
[common_name] => Salix brachista
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[DCAR_021862] => Array
(
[gene_id] => DCAR_021862
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[alignment_length] => 429
[identity_percentage] => 43.1
[species] => dca
[common_name] => Daucus carota
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[HPP92_016785] => Array
(
[gene_id] => HPP92_016785
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[bit_score] => 326.6
[alignment_length] => 351
[identity_percentage] => 48.7
[species] => vpl
[common_name] => Vanilla planifolia
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[unitig_8.g3412] => Array
(
[gene_id] => unitig_8.g3412
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[alignment_length] => 422
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[species] => ugi
[common_name] => Utricularia gibba
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Ciclev10028606m.g] => Array
(
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[bit_score] => 322.8
[alignment_length] => 336
[identity_percentage] => 52.1
[species] => ccl
[common_name] => Citrus clementina
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lalb_Chr15g0090431] => Array
(
[gene_id] => Lalb_Chr15g0090431
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[bit_score] => 322.4
[alignment_length] => 338
[identity_percentage] => 49.7
[species] => lal
[common_name] => Lupinus albus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CSS0040216] => Array
(
[gene_id] => CSS0040216
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[alignment_length] => 339
[identity_percentage] => 51.0
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Mapoly0084s0044] => Array
(
[gene_id] => Mapoly0084s0044
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[alignment_length] => 433
[identity_percentage] => 42.7
[species] => mpo
[common_name] => Marchantia polymorpha
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Dinv09029] => Array
(
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[alignment_length] => 329
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[species] => din
[common_name] => Davidia involucrata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[AUR62013138] => Array
(
[gene_id] => AUR62013138
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[alignment_length] => 384
[identity_percentage] => 46.1
[species] => cqu
[common_name] => Chenopodium quinoa
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Rhsim01G0080800] => Array
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[bit_score] => 305.4
[alignment_length] => 308
[identity_percentage] => 56.2
[species] => rsi
[common_name] => Rhododendron simsii
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BcaB04g18975] => Array
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[gene_id] => BcaB04g18975
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[alignment_length] => 424
[identity_percentage] => 41.3
[species] => bca
[common_name] => Brassica carinata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Glyma.08G054300] => Array
(
[gene_id] => Glyma.08G054300
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[bit_score] => 302.4
[alignment_length] => 299
[identity_percentage] => 50.8
[species] => gma
[common_name] => Glycine max
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Cre11.g467630] => Array
(
[gene_id] => Cre11.g467630
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[bit_score] => 300.8
[alignment_length] => 485
[identity_percentage] => 39.4
[species] => cre
[common_name] => Chlamydomonas reinhardtii
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(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Zm00001eb054500] => Array
(
[gene_id] => Zm00001eb054500
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[bit_score] => 290.8
[alignment_length] => 323
[identity_percentage] => 46.1
[species] => zma
[common_name] => Zea mays
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Pp3c22_23080] => Array
(
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[bit_score] => 287.0
[alignment_length] => 402
[identity_percentage] => 38.3
[species] => ppa
[common_name] => Physcomitrium patens
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Pp3c20_10030] => Array
(
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[bit_score] => 285.0
[alignment_length] => 420
[identity_percentage] => 38.1
[species] => ppa
[common_name] => Physcomitrium patens
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[PGSC0003DMG400016669] => Array
(
[gene_id] => PGSC0003DMG400016669
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[bit_score] => 281.2
[alignment_length] => 281
[identity_percentage] => 51.2
[species] => stu
[common_name] => Solanum tuberosum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Ah.01g022290] => Array
(
[gene_id] => Ah.01g022290
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[bit_score] => 273.1
[alignment_length] => 279
[identity_percentage] => 50.5
[species] => amhyb
[common_name] => Amaranthus hybridus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[PRCOL_00001088] => Array
(
[gene_id] => PRCOL_00001088
[e_value] => 2.5e-70
[bit_score] => 270.4
[alignment_length] => 405
[identity_percentage] => 41.5
[species] => pco
[common_name] => Prasinoderma coloniale
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BraA10t44835Z] => Array
(
[gene_id] => BraA10t44835Z
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[bit_score] => 262.3
[alignment_length] => 280
[identity_percentage] => 49.3
[species] => bra
[common_name] => Brassica rapa
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[arahy.Tifrunner.gnm1.ann1.5JS7Y0] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.5JS7Y0
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[bit_score] => 261.5
[alignment_length] => 231
[identity_percentage] => 56.3
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MCO09G683] => Array
(
[gene_id] => MCO09G683
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[bit_score] => 256.9
[alignment_length] => 401
[identity_percentage] => 40.1
[species] => mco
[common_name] => Micromonas commoda
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Actinidia18897] => Array
(
[gene_id] => Actinidia18897
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[bit_score] => 251.5
[alignment_length] => 339
[identity_percentage] => 43.7
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[SEGI_27008] => Array
(
[gene_id] => SEGI_27008
[e_value] => 3.4e-64
[bit_score] => 250.0
[alignment_length] => 171
[identity_percentage] => 70.2
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[RcHm_v2.0_Chr3g0454431] => Array
(
[gene_id] => RcHm_v2.0_Chr3g0454431
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[bit_score] => 240.4
[alignment_length] => 150
[identity_percentage] => 76.7
[species] => rch
[common_name] => Rosa chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[SalBow5G0105] => Array
(
[gene_id] => SalBow5G0105
[e_value] => 6.7e-60
[bit_score] => 235.7
[alignment_length] => 346
[identity_percentage] => 41.9
[species] => sbo
[common_name] => Salvia bowleyana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[TAR622G0518] => Array
(
[gene_id] => TAR622G0518
[e_value] => 2.2e-55
[bit_score] => 220.7
[alignment_length] => 216
[identity_percentage] => 55.1
[species] => tar
[common_name] => Trochodendron aralioides
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[vmacro17782] => Array
(
[gene_id] => vmacro17782
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[bit_score] => 218.8
[alignment_length] => 171
[identity_percentage] => 64.3
[species] => vma
[common_name] => Vaccinium macrocarpon
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Dinv04126] => Array
(
[gene_id] => Dinv04126
[e_value] => 7.2e-54
[bit_score] => 215.7
[alignment_length] => 301
[identity_percentage] => 41.9
[species] => din
[common_name] => Davidia involucrata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Oeu000793.1] => Array
(
[gene_id] => Oeu000793.1
[e_value] => 4.4e-51
[bit_score] => 206.5
[alignment_length] => 143
[identity_percentage] => 68.5
[species] => oeu
[common_name] => Olea europaea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CARHR292250] => Array
(
[gene_id] => CARHR292250
[e_value] => 1.3e-50
[bit_score] => 204.9
[alignment_length] => 170
[identity_percentage] => 57.6
[species] => chi
[common_name] => Cardamine hirsuta
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lj5C566G6] => Array
(
[gene_id] => Lj5C566G6
[e_value] => 4.8e-50
[bit_score] => 203.0
[alignment_length] => 168
[identity_percentage] => 63.7
[species] => lonja
[common_name] => Lonicera japonica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Cfa006575] => Array
(
[gene_id] => Cfa006575
[e_value] => 6.3e-50
[bit_score] => 202.6
[alignment_length] => 141
[identity_percentage] => 73.0
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MCO02G388] => Array
(
[gene_id] => MCO02G388
[e_value] => 1.8e-49
[bit_score] => 201.1
[alignment_length] => 422
[identity_percentage] => 31.0
[species] => mco
[common_name] => Micromonas commoda
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Cfa015126] => Array
(
[gene_id] => Cfa015126
[e_value] => 4.7e-45
[bit_score] => 186.4
[alignment_length] => 210
[identity_percentage] => 50.0
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Actinidia24639] => Array
(
[gene_id] => Actinidia24639
[e_value] => 8.0e-45
[bit_score] => 185.7
[alignment_length] => 425
[identity_percentage] => 34.6
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lj5C566G1] => Array
(
[gene_id] => Lj5C566G1
[e_value] => 8.2e-42
[bit_score] => 175.6
[alignment_length] => 146
[identity_percentage] => 61.6
[species] => lonja
[common_name] => Lonicera japonica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Pp3c21_15880] => Array
(
[gene_id] => Pp3c21_15880
[e_value] => 5.9e-40
[bit_score] => 169.5
[alignment_length] => 231
[identity_percentage] => 40.7
[species] => ppa
[common_name] => Physcomitrium patens
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D317485
)
)
[SEGI_08361] => Array
(
[gene_id] => SEGI_08361
[e_value] => 5.9e-40
[bit_score] => 169.5
[alignment_length] => 129
[identity_percentage] => 65.1
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[SEGI_16707] => Array
(
[gene_id] => SEGI_16707
[e_value] => 8.5e-39
[bit_score] => 165.6
[alignment_length] => 149
[identity_percentage] => 53.7
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MD12G1221300] => Array
(
[gene_id] => MD12G1221300
[e_value] => 1.5e-38
[bit_score] => 164.9
[alignment_length] => 104
[identity_percentage] => 72.1
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Actinidia24969] => Array
(
[gene_id] => Actinidia24969
[e_value] => 4.7e-37
[bit_score] => 159.8
[alignment_length] => 137
[identity_percentage] => 63.5
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[BcaB08g36561] => Array
(
[gene_id] => BcaB08g36561
[e_value] => 1.4e-36
[bit_score] => 158.3
[alignment_length] => 152
[identity_percentage] => 53.9
[species] => bca
[common_name] => Brassica carinata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CDE10G0428] => Array
(
[gene_id] => CDE10G0428
[e_value] => 4.0e-36
[bit_score] => 156.8
[alignment_length] => 217
[identity_percentage] => 43.8
[species] => cde
[common_name] => Ceratophyllum demersum
[gf] => Array
(
[HOMFAM] => HOM05D005870
[ORTHOFAM] => ORTHO05D007216
)
)
[vmacro17783] => Array
(
[gene_id] => vmacro17783
[e_value] => 3.1e-33
[bit_score] => 147.1
[alignment_length] => 144
[identity_percentage] => 48.6
[species] => vma
[common_name] => Vaccinium macrocarpon
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[PRCOL_00000136] => Array
(
[gene_id] => PRCOL_00000136
[e_value] => 4.1e-33
[bit_score] => 146.7
[alignment_length] => 386
[identity_percentage] => 29.8
[species] => pco
[common_name] => Prasinoderma coloniale
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D334075
)
)
[unitig_699.g19060] => Array
(
[gene_id] => unitig_699.g19060
[e_value] => 4.5e-32
[bit_score] => 143.3
[alignment_length] => 129
[identity_percentage] => 54.3
[species] => ugi
[common_name] => Utricularia gibba
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[ATR0782G133] => Array
(
[gene_id] => ATR0782G133
[e_value] => 7.7e-32
[bit_score] => 142.5
[alignment_length] => 151
[identity_percentage] => 45.0
[species] => atr
[common_name] => Amborella trichopoda
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Oeu000804.1] => Array
(
[gene_id] => Oeu000804.1
[e_value] => 2.2e-31
[bit_score] => 141.0
[alignment_length] => 85
[identity_percentage] => 78.8
[species] => oeu
[common_name] => Olea europaea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D018192
)
)
[PGSC0003DMG400008518] => Array
(
[gene_id] => PGSC0003DMG400008518
[e_value] => 1.4e-28
[bit_score] => 131.7
[alignment_length] => 86
[identity_percentage] => 70.9
[species] => stu
[common_name] => Solanum tuberosum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Zm00001eb216600] => Array
(
[gene_id] => Zm00001eb216600
[e_value] => 2.3e-28
[bit_score] => 131.0
[alignment_length] => 152
[identity_percentage] => 44.7
[species] => zma
[common_name] => Zea mays
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[COL.COLO4_20745] => Array
(
[gene_id] => COL.COLO4_20745
[e_value] => 1.7e-26
[bit_score] => 124.8
[alignment_length] => 115
[identity_percentage] => 60.9
[species] => col
[common_name] => Corchorus olitorius
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MD00G1192500] => Array
(
[gene_id] => MD00G1192500
[e_value] => 1.7e-26
[bit_score] => 124.8
[alignment_length] => 83
[identity_percentage] => 74.7
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D018192
)
)
[Lj2g0012825] => Array
(
[gene_id] => Lj2g0012825
[e_value] => 4.1e-25
[bit_score] => 120.2
[alignment_length] => 87
[identity_percentage] => 67.8
[species] => lja
[common_name] => Lotus japonicus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D018192
)
)
[Actinidia13001] => Array
(
[gene_id] => Actinidia13001
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[bit_score] => 114.4
[alignment_length] => 108
[identity_percentage] => 60.2
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CBR_g12438] => Array
(
[gene_id] => CBR_g12438
[e_value] => 3.8e-23
[bit_score] => 113.6
[alignment_length] => 451
[identity_percentage] => 28.4
[species] => cbr
[common_name] => Chara braunii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Gohir.D10G107300] => Array
(
[gene_id] => Gohir.D10G107300
[e_value] => 3.8e-23
[bit_score] => 113.6
[alignment_length] => 154
[identity_percentage] => 40.9
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Gorai.011G117700] => Array
(
[gene_id] => Gorai.011G117700
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[bit_score] => 113.6
[alignment_length] => 154
[identity_percentage] => 40.9
[species] => gra
[common_name] => Gossypium raimondii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[SEGI_40749] => Array
(
[gene_id] => SEGI_40749
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[bit_score] => 112.8
[alignment_length] => 149
[identity_percentage] => 43.6
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CANSAT01G2722] => Array
(
[gene_id] => CANSAT01G2722
[e_value] => 1.1e-22
[bit_score] => 112.1
[alignment_length] => 178
[identity_percentage] => 37.1
[species] => cansat
[common_name] => Cannabis sativa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[DCAR_009614] => Array
(
[gene_id] => DCAR_009614
[e_value] => 1.1e-22
[bit_score] => 112.1
[alignment_length] => 213
[identity_percentage] => 36.2
[species] => dca
[common_name] => Daucus carota
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Duzib147G0233] => Array
(
[gene_id] => Duzib147G0233
[e_value] => 1.1e-22
[bit_score] => 112.1
[alignment_length] => 150
[identity_percentage] => 42.0
[species] => dzi
[common_name] => Durio zibethinus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Duzib187G1023] => Array
(
[gene_id] => Duzib187G1023
[e_value] => 1.1e-22
[bit_score] => 112.1
[alignment_length] => 153
[identity_percentage] => 40.5
[species] => dzi
[common_name] => Durio zibethinus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Gohir.A10G067900] => Array
(
[gene_id] => Gohir.A10G067900
[e_value] => 1.1e-22
[bit_score] => 112.1
[alignment_length] => 154
[identity_percentage] => 40.3
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Lj2C608G9] => Array
(
[gene_id] => Lj2C608G9
[e_value] => 1.1e-22
[bit_score] => 112.1
[alignment_length] => 209
[identity_percentage] => 36.4
[species] => lonja
[common_name] => Lonicera japonica
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[GSVIVG01022368001] => Array
(
[gene_id] => GSVIVG01022368001
[e_value] => 1.1e-22
[bit_score] => 112.1
[alignment_length] => 209
[identity_percentage] => 37.3
[species] => vvi
[common_name] => Vitis vinifera
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Atru.chr4.1112] => Array
(
[gene_id] => Atru.chr4.1112
[e_value] => 1.5e-22
[bit_score] => 111.7
[alignment_length] => 425
[identity_percentage] => 26.8
[species] => acertr
[common_name] => Acer truncatum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Aqoxy6G00228] => Array
(
[gene_id] => Aqoxy6G00228
[e_value] => 1.5e-22
[bit_score] => 111.7
[alignment_length] => 159
[identity_percentage] => 44.0
[species] => aox
[common_name] => Aquilegia oxysepala
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[DCAR_019960] => Array
(
[gene_id] => DCAR_019960
[e_value] => 1.9e-22
[bit_score] => 111.3
[alignment_length] => 159
[identity_percentage] => 42.1
[species] => dca
[common_name] => Daucus carota
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Cfa002167] => Array
(
[gene_id] => Cfa002167
[e_value] => 2.5e-22
[bit_score] => 110.9
[alignment_length] => 405
[identity_percentage] => 28.9
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CSS0001960] => Array
(
[gene_id] => CSS0001960
[e_value] => 3.3e-22
[bit_score] => 110.5
[alignment_length] => 153
[identity_percentage] => 42.5
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CSS0017124] => Array
(
[gene_id] => CSS0017124
[e_value] => 3.3e-22
[bit_score] => 110.5
[alignment_length] => 153
[identity_percentage] => 42.5
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[MELO3C018563.2] => Array
(
[gene_id] => MELO3C018563.2
[e_value] => 4.3e-22
[bit_score] => 110.2
[alignment_length] => 424
[identity_percentage] => 24.5
[species] => cme
[common_name] => Cucumis melo
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Gohir.A05G382400] => Array
(
[gene_id] => Gohir.A05G382400
[e_value] => 4.3e-22
[bit_score] => 110.2
[alignment_length] => 153
[identity_percentage] => 40.5
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Gohir.D04G032800] => Array
(
[gene_id] => Gohir.D04G032800
[e_value] => 4.3e-22
[bit_score] => 110.2
[alignment_length] => 153
[identity_percentage] => 40.5
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Gorai.012G037200] => Array
(
[gene_id] => Gorai.012G037200
[e_value] => 4.3e-22
[bit_score] => 110.2
[alignment_length] => 153
[identity_percentage] => 40.5
[species] => gra
[common_name] => Gossypium raimondii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Nn1g08806] => Array
(
[gene_id] => Nn1g08806
[e_value] => 4.3e-22
[bit_score] => 110.2
[alignment_length] => 159
[identity_percentage] => 43.4
[species] => nnu
[common_name] => Nelumbo nucifera
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Potri.007G098600] => Array
(
[gene_id] => Potri.007G098600
[e_value] => 4.3e-22
[bit_score] => 110.2
[alignment_length] => 208
[identity_percentage] => 35.1
[species] => ptr
[common_name] => Populus trichocarpa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[THA.LOC104804452] => Array
(
[gene_id] => THA.LOC104804452
[e_value] => 4.3e-22
[bit_score] => 110.2
[alignment_length] => 146
[identity_percentage] => 43.2
[species] => tha
[common_name] => Tarenaya hassleriana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Nitab4.5_0000120g0190] => Array
(
[gene_id] => Nitab4.5_0000120g0190
[e_value] => 5.6e-22
[bit_score] => 109.8
[alignment_length] => 185
[identity_percentage] => 38.9
[species] => nta
[common_name] => Nicotiana tabacum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[SEGI_25123] => Array
(
[gene_id] => SEGI_25123
[e_value] => 5.6e-22
[bit_score] => 109.8
[alignment_length] => 159
[identity_percentage] => 42.1
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Sc09g0002170] => Array
(
[gene_id] => Sc09g0002170
[e_value] => 7.2e-22
[bit_score] => 109.4
[alignment_length] => 156
[identity_percentage] => 42.3
[species] => sci
[common_name] => Simmondsia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Thecc.01G141900] => Array
(
[gene_id] => Thecc.01G141900
[e_value] => 7.2e-22
[bit_score] => 109.4
[alignment_length] => 159
[identity_percentage] => 40.9
[species] => tca
[common_name] => Theobroma cacao
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Eucgr.I00054] => Array
(
[gene_id] => Eucgr.I00054
[e_value] => 9.5e-22
[bit_score] => 109.0
[alignment_length] => 159
[identity_percentage] => 41.5
[species] => egr
[common_name] => Eucalyptus grandis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Lsat_1_v5_gn_5_69021] => Array
(
[gene_id] => Lsat_1_v5_gn_5_69021
[e_value] => 9.5e-22
[bit_score] => 109.0
[alignment_length] => 424
[identity_percentage] => 27.8
[species] => lsa
[common_name] => Lactuca sativa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Nn5g28308] => Array
(
[gene_id] => Nn5g28308
[e_value] => 9.5e-22
[bit_score] => 109.0
[alignment_length] => 159
[identity_percentage] => 43.4
[species] => nnu
[common_name] => Nelumbo nucifera
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Potri.005G070300] => Array
(
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[e_value] => 9.5e-22
[bit_score] => 109.0
[alignment_length] => 159
[identity_percentage] => 41.5
[species] => ptr
[common_name] => Populus trichocarpa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[TAR381G0025] => Array
(
[gene_id] => TAR381G0025
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[alignment_length] => 153
[identity_percentage] => 42.5
[species] => tar
[common_name] => Trochodendron aralioides
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[Dinv40958] => Array
(
[gene_id] => Dinv40958
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[alignment_length] => 200
[identity_percentage] => 37.5
[species] => din
[common_name] => Davidia involucrata
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Glyma.05G195500] => Array
(
[gene_id] => Glyma.05G195500
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[species] => gma
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(
[HOMFAM] => HOM05D001206
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)
)
[Manes.13G079500] => Array
(
[gene_id] => Manes.13G079500
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[species] => mes
[common_name] => Manihot esculenta
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[Rhsim08G0002000] => Array
(
[gene_id] => Rhsim08G0002000
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[alignment_length] => 202
[identity_percentage] => 36.6
[species] => rsi
[common_name] => Rhododendron simsii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Sabra07G0082000] => Array
(
[gene_id] => Sabra07G0082000
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[species] => sbr
[common_name] => Salix brachista
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[VMungo0331G0265] => Array
(
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[alignment_length] => 132
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[species] => vmu
[common_name] => Vigna mungo
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(
[HOMFAM] => HOM05D001310
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)
)
[Ciclev10001093m.g] => Array
(
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[species] => ccl
[common_name] => Citrus clementina
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[ECA233G4817] => Array
(
[gene_id] => ECA233G4817
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[bit_score] => 107.8
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[species] => eca
[common_name] => Erigeron canadensis
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[HanXRQChr01g0018901] => Array
(
[gene_id] => HanXRQChr01g0018901
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[bit_score] => 107.8
[alignment_length] => 153
[identity_percentage] => 42.5
[species] => han
[common_name] => Helianthus annuus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[PSO170G4632] => Array
(
[gene_id] => PSO170G4632
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[alignment_length] => 156
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[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[PSO528G0179] => Array
(
[gene_id] => PSO528G0179
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[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Hund07212] => Array
(
[gene_id] => Hund07212
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[bit_score] => 107.8
[alignment_length] => 172
[identity_percentage] => 40.7
[species] => sun
[common_name] => Selenicereus undatus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[AUR62000552] => Array
(
[gene_id] => AUR62000552
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[bit_score] => 107.5
[alignment_length] => 150
[identity_percentage] => 40.7
[species] => cqu
[common_name] => Chenopodium quinoa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[AUR62006904] => Array
(
[gene_id] => AUR62006904
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[bit_score] => 107.5
[alignment_length] => 150
[identity_percentage] => 40.7
[species] => cqu
[common_name] => Chenopodium quinoa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CsaV3_4G030810] => Array
(
[gene_id] => CsaV3_4G030810
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[bit_score] => 107.5
[alignment_length] => 206
[identity_percentage] => 36.4
[species] => csa
[common_name] => Cucumis sativus L.
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[TAR622G0809] => Array
(
[gene_id] => TAR622G0809
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[alignment_length] => 117
[identity_percentage] => 45.3
[species] => tar
[common_name] => Trochodendron aralioides
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[COL.COLO4_12112] => Array
(
[gene_id] => COL.COLO4_12112
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[bit_score] => 107.1
[alignment_length] => 153
[identity_percentage] => 39.9
[species] => col
[common_name] => Corchorus olitorius
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[ECA248G2477] => Array
(
[gene_id] => ECA248G2477
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[bit_score] => 107.1
[alignment_length] => 153
[identity_percentage] => 41.8
[species] => eca
[common_name] => Erigeron canadensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[ClCG04G001740] => Array
(
[gene_id] => ClCG04G001740
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[bit_score] => 106.7
[alignment_length] => 203
[identity_percentage] => 37.4
[species] => cla
[common_name] => Citrullus lanatus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Cc00_g12090] => Array
(
[gene_id] => Cc00_g12090
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[bit_score] => 106.7
[alignment_length] => 156
[identity_percentage] => 42.3
[species] => ccan
[common_name] => Coffea canephora
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[MELO3C008949.2] => Array
(
[gene_id] => MELO3C008949.2
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[alignment_length] => 202
[identity_percentage] => 37.6
[species] => cme
[common_name] => Cucumis melo
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Gohir.A11G058000] => Array
(
[gene_id] => Gohir.A11G058000
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[bit_score] => 106.7
[alignment_length] => 154
[identity_percentage] => 41.6
[species] => ghi
[common_name] => Gossypium hirsutum
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Gohir.D11G062200] => Array
(
[gene_id] => Gohir.D11G062200
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[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Gorai.007G067000] => Array
(
[gene_id] => Gorai.007G067000
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[bit_score] => 106.7
[alignment_length] => 154
[identity_percentage] => 41.6
[species] => gra
[common_name] => Gossypium raimondii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[VMungo0251G0194] => Array
(
[gene_id] => VMungo0251G0194
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[bit_score] => 106.7
[alignment_length] => 159
[identity_percentage] => 41.5
[species] => vmu
[common_name] => Vigna mungo
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[ATR0584G074] => Array
(
[gene_id] => ATR0584G074
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[bit_score] => 106.3
[alignment_length] => 153
[identity_percentage] => 42.5
[species] => atr
[common_name] => Amborella trichopoda
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Sed0026081] => Array
(
[gene_id] => Sed0026081
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[bit_score] => 106.3
[alignment_length] => 153
[identity_percentage] => 40.5
[species] => sed
[common_name] => Sechium edule
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CsaV3_7G007390] => Array
(
[gene_id] => CsaV3_7G007390
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[bit_score] => 105.9
[alignment_length] => 424
[identity_percentage] => 24.3
[species] => csa
[common_name] => Cucumis sativus L.
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Duzib264G0587] => Array
(
[gene_id] => Duzib264G0587
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[bit_score] => 105.9
[alignment_length] => 153
[identity_percentage] => 40.5
[species] => dzi
[common_name] => Durio zibethinus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Phvul.002G275700] => Array
(
[gene_id] => Phvul.002G275700
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[bit_score] => 105.9
[alignment_length] => 159
[identity_percentage] => 41.5
[species] => pvu
[common_name] => Phaseolus vulgaris
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[SEGI_24729] => Array
(
[gene_id] => SEGI_24729
[e_value] => 8.0e-21
[bit_score] => 105.9
[alignment_length] => 118
[identity_percentage] => 43.2
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D046685
)
)
[THA.LOC104819480] => Array
(
[gene_id] => THA.LOC104819480
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[bit_score] => 105.9
[alignment_length] => 149
[identity_percentage] => 43.0
[species] => tha
[common_name] => Tarenaya hassleriana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Ah.02g117670] => Array
(
[gene_id] => Ah.02g117670
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[bit_score] => 105.5
[alignment_length] => 179
[identity_percentage] => 37.4
[species] => amhyb
[common_name] => Amaranthus hybridus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Ca_17610_v3] => Array
(
[gene_id] => Ca_17610_v3
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[bit_score] => 105.5
[alignment_length] => 217
[identity_percentage] => 35.9
[species] => car
[common_name] => Cicer arietinum L.
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[FAN26G1265] => Array
(
[gene_id] => FAN26G1265
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[bit_score] => 105.5
[alignment_length] => 153
[identity_percentage] => 41.8
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Sopen12g027140] => Array
(
[gene_id] => Sopen12g027140
[e_value] => 1.0e-20
[bit_score] => 105.5
[alignment_length] => 199
[identity_percentage] => 36.2
[species] => spe
[common_name] => Solanum pennellii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[vmacro18673] => Array
(
[gene_id] => vmacro18673
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[bit_score] => 105.5
[alignment_length] => 240
[identity_percentage] => 34.6
[species] => vma
[common_name] => Vaccinium macrocarpon
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[FvH4_1g25540] => Array
(
[gene_id] => FvH4_1g25540
[e_value] => 1.4e-20
[bit_score] => 105.1
[alignment_length] => 153
[identity_percentage] => 41.2
[species] => fve
[common_name] => Fragaria vesca
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[FAN28G1033] => Array
(
[gene_id] => FAN28G1033
[e_value] => 1.4e-20
[bit_score] => 105.1
[alignment_length] => 153
[identity_percentage] => 41.2
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Glyma.08G003100] => Array
(
[gene_id] => Glyma.08G003100
[e_value] => 1.4e-20
[bit_score] => 105.1
[alignment_length] => 154
[identity_percentage] => 40.3
[species] => gma
[common_name] => Glycine max
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Manes.10G094600] => Array
(
[gene_id] => Manes.10G094600
[e_value] => 1.4e-20
[bit_score] => 105.1
[alignment_length] => 443
[identity_percentage] => 25.1
[species] => mes
[common_name] => Manihot esculenta
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CiPaw.04G077300] => Array
(
[gene_id] => CiPaw.04G077300
[e_value] => 1.8e-20
[bit_score] => 104.8
[alignment_length] => 149
[identity_percentage] => 40.3
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Sabra16G0178300] => Array
(
[gene_id] => Sabra16G0178300
[e_value] => 1.8e-20
[bit_score] => 104.8
[alignment_length] => 434
[identity_percentage] => 26.0
[species] => sbr
[common_name] => Salix brachista
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[FvH4_2g11120] => Array
(
[gene_id] => FvH4_2g11120
[e_value] => 2.3e-20
[bit_score] => 104.4
[alignment_length] => 425
[identity_percentage] => 25.2
[species] => fve
[common_name] => Fragaria vesca
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[FAN24G1517] => Array
(
[gene_id] => FAN24G1517
[e_value] => 2.3e-20
[bit_score] => 104.4
[alignment_length] => 425
[identity_percentage] => 25.2
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[RcHm_v2.0_Chr2g0123671] => Array
(
[gene_id] => RcHm_v2.0_Chr2g0123671
[e_value] => 2.3e-20
[bit_score] => 104.4
[alignment_length] => 153
[identity_percentage] => 39.9
[species] => rch
[common_name] => Rosa chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Medtr8g094740] => Array
(
[gene_id] => Medtr8g094740
[e_value] => 3.0e-20
[bit_score] => 104.0
[alignment_length] => 159
[identity_percentage] => 40.9
[species] => mtr
[common_name] => Medicago truncatula
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Os12g0169000] => Array
(
[gene_id] => Os12g0169000
[e_value] => 3.0e-20
[bit_score] => 104.0
[alignment_length] => 154
[identity_percentage] => 40.9
[species] => osa
[common_name] => Oryza sativa ssp. japonica
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[PRCOL_00000262] => Array
(
[gene_id] => PRCOL_00000262
[e_value] => 3.0e-20
[bit_score] => 104.0
[alignment_length] => 149
[identity_percentage] => 43.6
[species] => pco
[common_name] => Prasinoderma coloniale
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[CANSAT54G1477] => Array
(
[gene_id] => CANSAT54G1477
[e_value] => 4.0e-20
[bit_score] => 103.6
[alignment_length] => 414
[identity_percentage] => 26.6
[species] => cansat
[common_name] => Cannabis sativa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Cre08.g360100] => Array
(
[gene_id] => Cre08.g360100
[e_value] => 4.0e-20
[bit_score] => 103.6
[alignment_length] => 160
[identity_percentage] => 42.5
[species] => cre
[common_name] => Chlamydomonas reinhardtii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D139251
)
)
[Hma1.2p1_2302F.1_g319310] => Array
(
[gene_id] => Hma1.2p1_2302F.1_g319310
[e_value] => 4.0e-20
[bit_score] => 103.6
[alignment_length] => 149
[identity_percentage] => 40.9
[species] => hma
[common_name] => Hydrangea macrophylla
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Mapoly0001s0333] => Array
(
[gene_id] => Mapoly0001s0333
[e_value] => 4.0e-20
[bit_score] => 103.6
[alignment_length] => 146
[identity_percentage] => 40.4
[species] => mpo
[common_name] => Marchantia polymorpha
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Oeu042318.2] => Array
(
[gene_id] => Oeu042318.2
[e_value] => 4.0e-20
[bit_score] => 103.6
[alignment_length] => 203
[identity_percentage] => 35.5
[species] => oeu
[common_name] => Olea europaea
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Psat7g043520] => Array
(
[gene_id] => Psat7g043520
[e_value] => 4.0e-20
[bit_score] => 103.6
[alignment_length] => 159
[identity_percentage] => 40.3
[species] => psa
[common_name] => Pisum sativum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Sed0003330] => Array
(
[gene_id] => Sed0003330
[e_value] => 4.0e-20
[bit_score] => 103.6
[alignment_length] => 424
[identity_percentage] => 24.1
[species] => sed
[common_name] => Sechium edule
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[SMO117G0062] => Array
(
[gene_id] => SMO117G0062
[e_value] => 4.0e-20
[bit_score] => 103.6
[alignment_length] => 209
[identity_percentage] => 37.3
[species] => smo
[common_name] => Selaginella moellendorffii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[SMO304G0067] => Array
(
[gene_id] => SMO304G0067
[e_value] => 4.0e-20
[bit_score] => 103.6
[alignment_length] => 443
[identity_percentage] => 25.3
[species] => smo
[common_name] => Selaginella moellendorffii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Sopen01g048710] => Array
(
[gene_id] => Sopen01g048710
[e_value] => 4.0e-20
[bit_score] => 103.6
[alignment_length] => 420
[identity_percentage] => 28.1
[species] => spe
[common_name] => Solanum pennellii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CBR_g41054] => Array
(
[gene_id] => CBR_g41054
[e_value] => 5.2e-20
[bit_score] => 103.2
[alignment_length] => 138
[identity_percentage] => 43.5
[species] => cbr
[common_name] => Chara braunii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Lsat_1_v5_gn_1_81601] => Array
(
[gene_id] => Lsat_1_v5_gn_1_81601
[e_value] => 5.2e-20
[bit_score] => 103.2
[alignment_length] => 149
[identity_percentage] => 41.6
[species] => lsa
[common_name] => Lactuca sativa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[MD15G1139000] => Array
(
[gene_id] => MD15G1139000
[e_value] => 5.2e-20
[bit_score] => 103.2
[alignment_length] => 153
[identity_percentage] => 40.5
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Potri.001G285900] => Array
(
[gene_id] => Potri.001G285900
[e_value] => 5.2e-20
[bit_score] => 103.2
[alignment_length] => 440
[identity_percentage] => 25.2
[species] => ptr
[common_name] => Populus trichocarpa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Prupe.4G282000] => Array
(
[gene_id] => Prupe.4G282000
[e_value] => 5.2e-20
[bit_score] => 103.2
[alignment_length] => 153
[identity_percentage] => 39.2
[species] => ppe
[common_name] => Prunus persica
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[QL10p040090] => Array
(
[gene_id] => QL10p040090
[e_value] => 5.2e-20
[bit_score] => 103.2
[alignment_length] => 164
[identity_percentage] => 37.2
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Solyc01g106340.3] => Array
(
[gene_id] => Solyc01g106340.3
[e_value] => 5.2e-20
[bit_score] => 103.2
[alignment_length] => 420
[identity_percentage] => 28.1
[species] => sly
[common_name] => Solanum lycopersicum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[TWI79G0285] => Array
(
[gene_id] => TWI79G0285
[e_value] => 5.2e-20
[bit_score] => 103.2
[alignment_length] => 149
[identity_percentage] => 40.3
[species] => twi
[common_name] => Tripterygium wilfordii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[ClCG09G016410] => Array
(
[gene_id] => ClCG09G016410
[e_value] => 6.8e-20
[bit_score] => 102.8
[alignment_length] => 424
[identity_percentage] => 23.8
[species] => cla
[common_name] => Citrullus lanatus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[FAN27G1668] => Array
(
[gene_id] => FAN27G1668
[e_value] => 6.8e-20
[bit_score] => 102.8
[alignment_length] => 425
[identity_percentage] => 24.9
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[A06p31100] => Array
(
[gene_id] => A06p31100
[e_value] => 8.9e-20
[bit_score] => 102.4
[alignment_length] => 421
[identity_percentage] => 25.2
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Migut.H00836] => Array
(
[gene_id] => Migut.H00836
[e_value] => 8.9e-20
[bit_score] => 102.4
[alignment_length] => 210
[identity_percentage] => 36.2
[species] => egut
[common_name] => Erythranthe guttata
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Lj4g0025003] => Array
(
[gene_id] => Lj4g0025003
[e_value] => 8.9e-20
[bit_score] => 102.4
[alignment_length] => 159
[identity_percentage] => 40.3
[species] => lja
[common_name] => Lotus japonicus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[RcHm_v2.0_Chr6g0269381] => Array
(
[gene_id] => RcHm_v2.0_Chr6g0269381
[e_value] => 8.9e-20
[bit_score] => 102.4
[alignment_length] => 414
[identity_percentage] => 25.4
[species] => rch
[common_name] => Rosa chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[arahy.Tifrunner.gnm1.ann1.J66KI7] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.J66KI7
[e_value] => 1.2e-19
[bit_score] => 102.1
[alignment_length] => 214
[identity_percentage] => 34.1
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[arahy.Tifrunner.gnm1.ann1.ZY648K] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.ZY648K
[e_value] => 1.2e-19
[bit_score] => 102.1
[alignment_length] => 214
[identity_percentage] => 34.1
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[BraA06t26053Z] => Array
(
[gene_id] => BraA06t26053Z
[e_value] => 1.2e-19
[bit_score] => 102.1
[alignment_length] => 421
[identity_percentage] => 25.2
[species] => bra
[common_name] => Brassica rapa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[unitig_899.g14644] => Array
(
[gene_id] => unitig_899.g14644
[e_value] => 1.2e-19
[bit_score] => 102.1
[alignment_length] => 146
[identity_percentage] => 41.1
[species] => ugi
[common_name] => Utricularia gibba
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CiPaw.03G115500] => Array
(
[gene_id] => CiPaw.03G115500
[e_value] => 1.5e-19
[bit_score] => 101.7
[alignment_length] => 149
[identity_percentage] => 38.9
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Cre10.g439400] => Array
(
[gene_id] => Cre10.g439400
[e_value] => 1.5e-19
[bit_score] => 101.7
[alignment_length] => 150
[identity_percentage] => 42.0
[species] => cre
[common_name] => Chlamydomonas reinhardtii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Pp3c11_9200] => Array
(
[gene_id] => Pp3c11_9200
[e_value] => 1.5e-19
[bit_score] => 101.7
[alignment_length] => 146
[identity_percentage] => 40.4
[species] => ppa
[common_name] => Physcomitrium patens
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[MSTRG.2774] => Array
(
[gene_id] => MSTRG.2774
[e_value] => 2.0e-19
[bit_score] => 101.3
[alignment_length] => 159
[identity_percentage] => 38.4
[species] => ama
[common_name] => Avicennia marina
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Pp3c26_13660] => Array
(
[gene_id] => Pp3c26_13660
[e_value] => 2.0e-19
[bit_score] => 101.3
[alignment_length] => 150
[identity_percentage] => 40.7
[species] => ppa
[common_name] => Physcomitrium patens
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[SMO118G0181] => Array
(
[gene_id] => SMO118G0181
[e_value] => 2.0e-19
[bit_score] => 101.3
[alignment_length] => 275
[identity_percentage] => 31.6
[species] => smo
[common_name] => Selaginella moellendorffii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Sopen01g048720] => Array
(
[gene_id] => Sopen01g048720
[e_value] => 2.6e-19
[bit_score] => 100.9
[alignment_length] => 426
[identity_percentage] => 23.7
[species] => spe
[common_name] => Solanum pennellii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[TPR.G32630] => Array
(
[gene_id] => TPR.G32630
[e_value] => 2.6e-19
[bit_score] => 100.9
[alignment_length] => 414
[identity_percentage] => 25.1
[species] => tpr
[common_name] => Trifolium pratense
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[TWI75G0035] => Array
(
[gene_id] => TWI75G0035
[e_value] => 2.6e-19
[bit_score] => 100.9
[alignment_length] => 149
[identity_percentage] => 40.3
[species] => twi
[common_name] => Tripterygium wilfordii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Ah.01g007260] => Array
(
[gene_id] => Ah.01g007260
[e_value] => 3.4e-19
[bit_score] => 100.5
[alignment_length] => 258
[identity_percentage] => 31.4
[species] => amhyb
[common_name] => Amaranthus hybridus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[AUR62004905] => Array
(
[gene_id] => AUR62004905
[e_value] => 3.4e-19
[bit_score] => 100.5
[alignment_length] => 400
[identity_percentage] => 27.2
[species] => cqu
[common_name] => Chenopodium quinoa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Zm00001eb091740] => Array
(
[gene_id] => Zm00001eb091740
[e_value] => 3.4e-19
[bit_score] => 100.5
[alignment_length] => 154
[identity_percentage] => 39.0
[species] => zma
[common_name] => Zea mays
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CAN.G504.54] => Array
(
[gene_id] => CAN.G504.54
[e_value] => 4.4e-19
[bit_score] => 100.1
[alignment_length] => 430
[identity_percentage] => 24.0
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[FAN15G0254] => Array
(
[gene_id] => FAN15G0254
[e_value] => 4.4e-19
[bit_score] => 100.1
[alignment_length] => 428
[identity_percentage] => 25.2
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Lalb_Chr11g0068731] => Array
(
[gene_id] => Lalb_Chr11g0068731
[e_value] => 4.4e-19
[bit_score] => 100.1
[alignment_length] => 215
[identity_percentage] => 32.1
[species] => lal
[common_name] => Lupinus albus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Pp3c3_2980] => Array
(
[gene_id] => Pp3c3_2980
[e_value] => 4.4e-19
[bit_score] => 100.1
[alignment_length] => 150
[identity_percentage] => 40.0
[species] => ppa
[common_name] => Physcomitrium patens
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Pp3c7_18330] => Array
(
[gene_id] => Pp3c7_18330
[e_value] => 5.7e-19
[bit_score] => 99.8
[alignment_length] => 150
[identity_percentage] => 40.0
[species] => ppa
[common_name] => Physcomitrium patens
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Duzib052G0331] => Array
(
[gene_id] => Duzib052G0331
[e_value] => 7.5e-19
[bit_score] => 99.4
[alignment_length] => 102
[identity_percentage] => 49.0
[species] => dzi
[common_name] => Durio zibethinus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[ATR0782G125] => Array
(
[gene_id] => ATR0782G125
[e_value] => 1.3e-18
[bit_score] => 98.6
[alignment_length] => 84
[identity_percentage] => 56.0
[species] => atr
[common_name] => Amborella trichopoda
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D018192
)
)
[Cfa024115] => Array
(
[gene_id] => Cfa024115
[e_value] => 1.3e-18
[bit_score] => 98.6
[alignment_length] => 161
[identity_percentage] => 39.8
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D126117
)
)
[Ca_17001_v3] => Array
(
[gene_id] => Ca_17001_v3
[e_value] => 1.3e-18
[bit_score] => 98.6
[alignment_length] => 159
[identity_percentage] => 38.4
[species] => car
[common_name] => Cicer arietinum L.
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Medtr3g048950] => Array
(
[gene_id] => Medtr3g048950
[e_value] => 1.3e-18
[bit_score] => 98.6
[alignment_length] => 237
[identity_percentage] => 31.6
[species] => mtr
[common_name] => Medicago truncatula
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[CAN.G504.51] => Array
(
[gene_id] => CAN.G504.51
[e_value] => 1.7e-18
[bit_score] => 98.2
[alignment_length] => 147
[identity_percentage] => 40.8
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Ca_00185_v3] => Array
(
[gene_id] => Ca_00185_v3
[e_value] => 1.7e-18
[bit_score] => 98.2
[alignment_length] => 415
[identity_percentage] => 24.8
[species] => car
[common_name] => Cicer arietinum L.
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[C03p61820] => Array
(
[gene_id] => C03p61820
[e_value] => 2.2e-18
[bit_score] => 97.8
[alignment_length] => 421
[identity_percentage] => 24.9
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[BolC3t18443H] => Array
(
[gene_id] => BolC3t18443H
[e_value] => 2.2e-18
[bit_score] => 97.8
[alignment_length] => 421
[identity_percentage] => 24.9
[species] => bol
[common_name] => Brassica oleracea
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Rhsim06G0124000] => Array
(
[gene_id] => Rhsim06G0124000
[e_value] => 2.2e-18
[bit_score] => 97.8
[alignment_length] => 149
[identity_percentage] => 40.9
[species] => rsi
[common_name] => Rhododendron simsii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Aa31LG1G17460] => Array
(
[gene_id] => Aa31LG1G17460
[e_value] => 2.9e-18
[bit_score] => 97.4
[alignment_length] => 230
[identity_percentage] => 32.6
[species] => aar
[common_name] => Aethionema arabicum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CAN.G504.52] => Array
(
[gene_id] => CAN.G504.52
[e_value] => 2.9e-18
[bit_score] => 97.4
[alignment_length] => 426
[identity_percentage] => 23.2
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Glyma.04G207800] => Array
(
[gene_id] => Glyma.04G207800
[e_value] => 2.9e-18
[bit_score] => 97.4
[alignment_length] => 159
[identity_percentage] => 38.4
[species] => gma
[common_name] => Glycine max
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[HanXRQChr08g0227101] => Array
(
[gene_id] => HanXRQChr08g0227101
[e_value] => 2.9e-18
[bit_score] => 97.4
[alignment_length] => 226
[identity_percentage] => 30.5
[species] => han
[common_name] => Helianthus annuus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Lalb_Chr20g0122751] => Array
(
[gene_id] => Lalb_Chr20g0122751
[e_value] => 2.9e-18
[bit_score] => 97.4
[alignment_length] => 414
[identity_percentage] => 24.9
[species] => lal
[common_name] => Lupinus albus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Mapoly0056s0114] => Array
(
[gene_id] => Mapoly0056s0114
[e_value] => 2.9e-18
[bit_score] => 97.4
[alignment_length] => 196
[identity_percentage] => 34.7
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[gf] => Array
(
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)
)
[MCO01G356] => Array
(
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[species] => mco
[common_name] => Micromonas commoda
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Nn6g34432] => Array
(
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[alignment_length] => 180
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[species] => nnu
[common_name] => Nelumbo nucifera
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(
[HOMFAM] => HOM05D001206
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)
)
[Phvul.006G036200] => Array
(
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[alignment_length] => 247
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[species] => pvu
[common_name] => Phaseolus vulgaris
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Psat5g186880] => Array
(
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[alignment_length] => 272
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[species] => psa
[common_name] => Pisum sativum
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(
[HOMFAM] => HOM05D001206
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)
)
[Sed0006625] => Array
(
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[species] => sed
[common_name] => Sechium edule
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(
[HOMFAM] => HOM05D001206
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)
)
[Solyc10g007840.3] => Array
(
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[species] => sly
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(
[HOMFAM] => HOM05D001206
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)
)
[Sopen10g003740] => Array
(
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[species] => spe
[common_name] => Solanum pennellii
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(
[HOMFAM] => HOM05D001206
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)
)
[PGSC0003DMG401021239] => Array
(
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[species] => stu
[common_name] => Solanum tuberosum
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(
[HOMFAM] => HOM05D001206
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)
)
[TWI14G1249] => Array
(
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[species] => twi
[common_name] => Tripterygium wilfordii
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(
[HOMFAM] => HOM05D001206
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)
)
[HPP92_004400] => Array
(
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[species] => vpl
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(
[HOMFAM] => HOM05D001206
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)
)
[HPP92_027806] => Array
(
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(
[HOMFAM] => HOM05D001206
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)
)
[Zm00001eb407860] => Array
(
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[species] => zma
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(
[HOMFAM] => HOM05D001206
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)
)
[Aqoxy3G00674] => Array
(
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[species] => aox
[common_name] => Aquilegia oxysepala
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(
[HOMFAM] => HOM05D001206
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)
)
[CARHR260190] => Array
(
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[identity_percentage] => 39.9
[species] => chi
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(
[HOMFAM] => HOM05D001206
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)
)
[CARHR288520] => Array
(
[gene_id] => CARHR288520
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[identity_percentage] => 38.0
[species] => chi
[common_name] => Cardamine hirsuta
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[HanXRQChr15g0469241] => Array
(
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[species] => han
[common_name] => Helianthus annuus
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(
[HOMFAM] => HOM05D001206
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)
)
[Mapoly0029s0077] => Array
(
[gene_id] => Mapoly0029s0077
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[species] => mpo
[common_name] => Marchantia polymorpha
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(
[HOMFAM] => HOM05D001206
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)
)
[Nitab4.5_0001277g0070] => Array
(
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[species] => nta
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(
[HOMFAM] => HOM05D001206
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)
)
[Phvul.009G152300] => Array
(
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[species] => pvu
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Thecc.02G124600] => Array
(
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[species] => tca
[common_name] => Theobroma cacao
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(
[HOMFAM] => HOM05D001206
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)
)
[Actinidia12826] => Array
(
[gene_id] => Actinidia12826
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[species] => ach
[common_name] => Actinidia chinensis
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[arahy.Tifrunner.gnm1.ann1.KRA1N7] => Array
(
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(
[HOMFAM] => HOM05D001206
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)
)
[Thhalv10003835m.g] => Array
(
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[alignment_length] => 422
[identity_percentage] => 25.4
[species] => esa
[common_name] => Eutrema salsugineum
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(
[HOMFAM] => HOM05D001206
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)
)
[Glyma.06G158000] => Array
(
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[species] => gma
[common_name] => Glycine max
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(
[HOMFAM] => HOM05D001206
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)
)
[Lj1g0004459] => Array
(
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[species] => lja
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(
[HOMFAM] => HOM05D001206
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)
)
[Lj1g0004545] => Array
(
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(
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)
)
[Lj1g0006094] => Array
(
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(
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)
)
[Lj1g0024754] => Array
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(
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)
)
[Nitab4.5_0006854g0060] => Array
(
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(
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)
)
[Os04g0643200] => Array
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[species] => osa
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(
[HOMFAM] => HOM05D001206
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)
)
[Sopen01g048700] => Array
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[species] => spe
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(
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)
)
[VMungo1309G1884] => Array
(
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[alignment_length] => 159
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[species] => vmu
[common_name] => Vigna mungo
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(
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)
)
[Zm00001eb068770] => Array
(
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[species] => zma
[common_name] => Zea mays
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(
[HOMFAM] => HOM05D001206
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)
)
[EL10Ac4g09666] => Array
(
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[species] => bvu
[common_name] => Beta vulgaris
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(
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)
)
[BcaB07g30635] => Array
(
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[species] => bca
[common_name] => Brassica carinata
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[A09p24920] => Array
(
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[species] => bna
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(
[HOMFAM] => HOM05D001206
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)
)
[BraA09t38080Z] => Array
(
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[identity_percentage] => 39.6
[species] => bra
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[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[CDE05G3011] => Array
(
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[alignment_length] => 112
[identity_percentage] => 48.2
[species] => cde
[common_name] => Ceratophyllum demersum
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(
[HOMFAM] => HOM05D001206
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)
)
[Ca_14632_v3] => Array
(
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[alignment_length] => 237
[identity_percentage] => 31.6
[species] => car
[common_name] => Cicer arietinum L.
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[DCAR_013291] => Array
(
[gene_id] => DCAR_013291
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[identity_percentage] => 47.3
[species] => dca
[common_name] => Daucus carota
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Gohir.A12G017600] => Array
(
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[bit_score] => 96.3
[alignment_length] => 425
[identity_percentage] => 24.0
[species] => ghi
[common_name] => Gossypium hirsutum
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(
[HOMFAM] => HOM05D001206
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)
)
[Gorai.013G053300] => Array
(
[gene_id] => Gorai.013G053300
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[bit_score] => 96.3
[alignment_length] => 416
[identity_percentage] => 26.2
[species] => gra
[common_name] => Gossypium raimondii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[HanXRQChr13g0387351] => Array
(
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[alignment_length] => 149
[identity_percentage] => 40.3
[species] => han
[common_name] => Helianthus annuus
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(
[HOMFAM] => HOM05D001206
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)
)
[Peaxi162Scf00035g03126] => Array
(
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[alignment_length] => 112
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[species] => pax
[common_name] => Petunia axillaris
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[PGR142G2427] => Array
(
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[alignment_length] => 420
[identity_percentage] => 26.4
[species] => pgr
[common_name] => Punica granatum
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[PGR142G3443] => Array
(
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[bit_score] => 96.3
[alignment_length] => 418
[identity_percentage] => 25.6
[species] => pgr
[common_name] => Punica granatum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[AagrBONN_evm.TU.Sc2ySwM_117.3185] => Array
(
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[bit_score] => 95.9
[alignment_length] => 197
[identity_percentage] => 33.0
[species] => aag
[common_name] => Anthoceros agrestis
[gf] => Array
(
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[ORTHOFAM] => ORTHO05D002068
)
)
[AagrBONN_evm.TU.Sc2ySwM_368.1898] => Array
(
[gene_id] => AagrBONN_evm.TU.Sc2ySwM_368.1898
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[bit_score] => 95.9
[alignment_length] => 110
[identity_percentage] => 47.3
[species] => aag
[common_name] => Anthoceros agrestis
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[arahy.Tifrunner.gnm1.ann1.02U3XB] => Array
(
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[bit_score] => 95.9
[alignment_length] => 431
[identity_percentage] => 25.3
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[C09p31950] => Array
(
[gene_id] => C09p31950
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[bit_score] => 95.9
[alignment_length] => 149
[identity_percentage] => 39.6
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[BolC9t56049H] => Array
(
[gene_id] => BolC9t56049H
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[bit_score] => 95.9
[alignment_length] => 149
[identity_percentage] => 39.6
[species] => bol
[common_name] => Brassica oleracea
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Gorai.008G018500] => Array
(
[gene_id] => Gorai.008G018500
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[bit_score] => 95.9
[alignment_length] => 424
[identity_percentage] => 23.6
[species] => gra
[common_name] => Gossypium raimondii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[PSO478G1473] => Array
(
[gene_id] => PSO478G1473
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[bit_score] => 95.9
[alignment_length] => 151
[identity_percentage] => 41.7
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Pp3c16_16670] => Array
(
[gene_id] => Pp3c16_16670
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[bit_score] => 95.9
[alignment_length] => 112
[identity_percentage] => 47.3
[species] => ppa
[common_name] => Physcomitrium patens
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Sp2g14920] => Array
(
[gene_id] => Sp2g14920
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[bit_score] => 95.9
[alignment_length] => 149
[identity_percentage] => 39.6
[species] => spa
[common_name] => Schrenkiella parvula
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Solyc01g106330.3] => Array
(
[gene_id] => Solyc01g106330.3
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[bit_score] => 95.9
[alignment_length] => 420
[identity_percentage] => 26.7
[species] => sly
[common_name] => Solanum lycopersicum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[AL5G14200] => Array
(
[gene_id] => AL5G14200
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[identity_percentage] => 39.6
[species] => aly
[common_name] => Arabidopsis lyrata
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[AT3G25660] => Array
(
[gene_id] => AT3G25660
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[alignment_length] => 149
[identity_percentage] => 39.6
[species] => ath
[common_name] => Arabidopsis thaliana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Carub.0005s0348] => Array
(
[gene_id] => Carub.0005s0348
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[alignment_length] => 149
[identity_percentage] => 38.9
[species] => cru
[common_name] => Capsella rubella
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Thhalv10012940m.g] => Array
(
[gene_id] => Thhalv10012940m.g
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[alignment_length] => 149
[identity_percentage] => 39.6
[species] => esa
[common_name] => Eutrema salsugineum
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Os11g0170000] => Array
(
[gene_id] => Os11g0170000
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[alignment_length] => 154
[identity_percentage] => 37.0
[species] => osa
[common_name] => Oryza sativa ssp. japonica
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[PSO017G2524] => Array
(
[gene_id] => PSO017G2524
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[alignment_length] => 151
[identity_percentage] => 41.1
[species] => pso
[common_name] => Papaver somniferum
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Pp3c27_1950] => Array
(
[gene_id] => Pp3c27_1950
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[alignment_length] => 112
[identity_percentage] => 47.3
[species] => ppa
[common_name] => Physcomitrium patens
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[PGR119G1042] => Array
(
[gene_id] => PGR119G1042
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[identity_percentage] => 39.2
[species] => pgr
[common_name] => Punica granatum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[PGSC0003DMG402003118] => Array
(
[gene_id] => PGSC0003DMG402003118
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[alignment_length] => 423
[identity_percentage] => 24.1
[species] => stu
[common_name] => Solanum tuberosum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[ATR1096G083] => Array
(
[gene_id] => ATR1096G083
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[bit_score] => 95.1
[alignment_length] => 235
[identity_percentage] => 34.5
[species] => atr
[common_name] => Amborella trichopoda
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[BcaC04g21423] => Array
(
[gene_id] => BcaC04g21423
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[bit_score] => 95.1
[alignment_length] => 149
[identity_percentage] => 38.9
[species] => bca
[common_name] => Brassica carinata
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Gohir.D12G018200] => Array
(
[gene_id] => Gohir.D12G018200
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[bit_score] => 95.1
[alignment_length] => 424
[identity_percentage] => 23.6
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Manes.01G129100] => Array
(
[gene_id] => Manes.01G129100
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[bit_score] => 95.1
[alignment_length] => 150
[identity_percentage] => 41.3
[species] => mes
[common_name] => Manihot esculenta
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Aa31LG2G6650] => Array
(
[gene_id] => Aa31LG2G6650
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[bit_score] => 94.7
[alignment_length] => 153
[identity_percentage] => 39.2
[species] => aar
[common_name] => Aethionema arabicum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Ah.01g016080] => Array
(
[gene_id] => Ah.01g016080
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[bit_score] => 94.7
[alignment_length] => 240
[identity_percentage] => 32.1
[species] => amhyb
[common_name] => Amaranthus hybridus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[arahy.Tifrunner.gnm1.ann1.BZT8G9] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.BZT8G9
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[bit_score] => 94.7
[alignment_length] => 112
[identity_percentage] => 46.4
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[arahy.Tifrunner.gnm1.ann1.DXFN4R] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.DXFN4R
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[alignment_length] => 112
[identity_percentage] => 46.4
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Migut.H02113] => Array
(
[gene_id] => Migut.H02113
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[bit_score] => 94.7
[alignment_length] => 112
[identity_percentage] => 45.5
[species] => egut
[common_name] => Erythranthe guttata
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[MBI05_g35447_MAGBIO] => Array
(
[gene_id] => MBI05_g35447_MAGBIO
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[bit_score] => 94.7
[alignment_length] => 151
[identity_percentage] => 41.1
[species] => mbi
[common_name] => Magnolia biondii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Psat1g212600] => Array
(
[gene_id] => Psat1g212600
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[alignment_length] => 410
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[species] => psa
[common_name] => Pisum sativum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[PGR142G3322] => Array
(
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[identity_percentage] => 46.4
[species] => pgr
[common_name] => Punica granatum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[SalBow7G4591] => Array
(
[gene_id] => SalBow7G4591
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[alignment_length] => 112
[identity_percentage] => 46.4
[species] => sbo
[common_name] => Salvia bowleyana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[TAR629G1684] => Array
(
[gene_id] => TAR629G1684
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[alignment_length] => 150
[identity_percentage] => 42.0
[species] => tar
[common_name] => Trochodendron aralioides
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[CSS0014076] => Array
(
[gene_id] => CSS0014076
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[alignment_length] => 110
[identity_percentage] => 46.4
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[CSS0050390] => Array
(
[gene_id] => CSS0050390
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[alignment_length] => 110
[identity_percentage] => 46.4
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[FAN26G0547] => Array
(
[gene_id] => FAN26G0547
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[bit_score] => 94.4
[alignment_length] => 128
[identity_percentage] => 42.2
[species] => fan
[common_name] => Fragaria x ananassa
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Hma1.2p1_0134F.1_g061460] => Array
(
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[alignment_length] => 164
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[species] => hma
[common_name] => Hydrangea macrophylla
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Hma1.2p1_0178F.1_g078230] => Array
(
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[alignment_length] => 112
[identity_percentage] => 46.4
[species] => hma
[common_name] => Hydrangea macrophylla
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Hma1.2p1_3358F.1_g335550] => Array
(
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[alignment_length] => 112
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[species] => hma
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[SEGI_06909] => Array
(
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[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[TWI23G1316] => Array
(
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[bit_score] => 94.4
[alignment_length] => 423
[identity_percentage] => 26.0
[species] => twi
[common_name] => Tripterygium wilfordii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[TWI38G0487] => Array
(
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[bit_score] => 94.4
[alignment_length] => 149
[identity_percentage] => 39.6
[species] => twi
[common_name] => Tripterygium wilfordii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[CiPaw.03G196100] => Array
(
[gene_id] => CiPaw.03G196100
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[bit_score] => 94.0
[alignment_length] => 160
[identity_percentage] => 41.2
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Haze_27080] => Array
(
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[bit_score] => 94.0
[alignment_length] => 207
[identity_percentage] => 34.8
[species] => cav
[common_name] => Corylus avellana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Actinidia02414] => Array
(
[gene_id] => Actinidia02414
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[alignment_length] => 430
[identity_percentage] => 23.3
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[MSTRG.12835] => Array
(
[gene_id] => MSTRG.12835
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[bit_score] => 93.6
[alignment_length] => 112
[identity_percentage] => 43.8
[species] => ama
[common_name] => Avicennia marina
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Glyma.15G060700] => Array
(
[gene_id] => Glyma.15G060700
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[bit_score] => 93.6
[alignment_length] => 154
[identity_percentage] => 37.7
[species] => gma
[common_name] => Glycine max
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Glyma.18G104200] => Array
(
[gene_id] => Glyma.18G104200
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[bit_score] => 93.6
[alignment_length] => 112
[identity_percentage] => 46.4
[species] => gma
[common_name] => Glycine max
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Lsat_1_v5_gn_8_31840] => Array
(
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[bit_score] => 93.6
[alignment_length] => 112
[identity_percentage] => 45.5
[species] => lsa
[common_name] => Lactuca sativa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Lalb_Chr15g0080441] => Array
(
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[bit_score] => 93.6
[alignment_length] => 112
[identity_percentage] => 45.5
[species] => lal
[common_name] => Lupinus albus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[QL11p026734] => Array
(
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[bit_score] => 93.6
[alignment_length] => 441
[identity_percentage] => 24.7
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[THA.LOC104799673] => Array
(
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[bit_score] => 93.6
[alignment_length] => 139
[identity_percentage] => 40.3
[species] => tha
[common_name] => Tarenaya hassleriana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CANSAT64G1074] => Array
(
[gene_id] => CANSAT64G1074
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[bit_score] => 93.2
[alignment_length] => 112
[identity_percentage] => 45.5
[species] => cansat
[common_name] => Cannabis sativa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[CAN.G504.53] => Array
(
[gene_id] => CAN.G504.53
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[bit_score] => 93.2
[alignment_length] => 417
[identity_percentage] => 23.3
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Cpa.g.sc139.29] => Array
(
[gene_id] => Cpa.g.sc139.29
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[bit_score] => 93.2
[alignment_length] => 112
[identity_percentage] => 44.6
[species] => cpa
[common_name] => Carica papaya
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[ClCG09G022260] => Array
(
[gene_id] => ClCG09G022260
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[bit_score] => 93.2
[alignment_length] => 240
[identity_percentage] => 30.4
[species] => cla
[common_name] => Citrullus lanatus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Glyma.08G311400] => Array
(
[gene_id] => Glyma.08G311400
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[bit_score] => 93.2
[alignment_length] => 112
[identity_percentage] => 46.4
[species] => gma
[common_name] => Glycine max
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[PSO700G0067] => Array
(
[gene_id] => PSO700G0067
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[bit_score] => 93.2
[alignment_length] => 225
[identity_percentage] => 31.1
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Psat5g059040] => Array
(
[gene_id] => Psat5g059040
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[bit_score] => 93.2
[alignment_length] => 159
[identity_percentage] => 37.1
[species] => psa
[common_name] => Pisum sativum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Prupe.3G169900] => Array
(
[gene_id] => Prupe.3G169900
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[bit_score] => 93.2
[alignment_length] => 112
[identity_percentage] => 45.5
[species] => ppe
[common_name] => Prunus persica
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Sp2g27530] => Array
(
[gene_id] => Sp2g27530
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[bit_score] => 93.2
[alignment_length] => 151
[identity_percentage] => 36.4
[species] => spa
[common_name] => Schrenkiella parvula
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Sopen01g048730] => Array
(
[gene_id] => Sopen01g048730
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[bit_score] => 93.2
[alignment_length] => 418
[identity_percentage] => 23.4
[species] => spe
[common_name] => Solanum pennellii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[PGSC0003DMG400003120] => Array
(
[gene_id] => PGSC0003DMG400003120
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[bit_score] => 93.2
[alignment_length] => 230
[identity_percentage] => 32.2
[species] => stu
[common_name] => Solanum tuberosum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Thecc.10G113900] => Array
(
[gene_id] => Thecc.10G113900
[e_value] => 5.4e-17
[bit_score] => 93.2
[alignment_length] => 151
[identity_percentage] => 42.4
[species] => tca
[common_name] => Theobroma cacao
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Zm00001eb418940] => Array
(
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[identity_percentage] => 37.6
[species] => zma
[common_name] => Zea mays
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(
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)
)
[Haze_13462] => Array
(
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[species] => cav
[common_name] => Corylus avellana
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[MELO3C014457.2] => Array
(
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[species] => cme
[common_name] => Cucumis melo
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(
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)
)
[CsaV3_6G037950] => Array
(
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[species] => csa
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[gf] => Array
(
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)
)
[MD09G1156700] => Array
(
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[species] => mdo
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[gf] => Array
(
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)
)
[MD17G1143200] => Array
(
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[species] => mdo
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(
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)
)
[Medtr2g010180] => Array
(
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[species] => mtr
[common_name] => Medicago truncatula
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(
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)
)
[PSO761G0240] => Array
(
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[species] => pso
[common_name] => Papaver somniferum
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(
[HOMFAM] => HOM05D001206
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)
)
[SGA_v2.0_scaffold4G02113] => Array
(
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[species] => sas
[common_name] => Striga asiatica
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(
[HOMFAM] => HOM05D001206
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)
)
[GSVIVG01020788001] => Array
(
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[species] => vvi
[common_name] => Vitis vinifera
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(
[HOMFAM] => HOM05D001206
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)
)
[CSS0046406] => Array
(
[gene_id] => CSS0046406
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[alignment_length] => 230
[identity_percentage] => 29.1
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
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(
[HOMFAM] => HOM05D001206
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)
)
[Dinv06275] => Array
(
[gene_id] => Dinv06275
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[alignment_length] => 153
[identity_percentage] => 39.2
[species] => din
[common_name] => Davidia involucrata
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Lj6g0018418] => Array
(
[gene_id] => Lj6g0018418
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[species] => lja
[common_name] => Lotus japonicus
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[Medtr3g096980] => Array
(
[gene_id] => Medtr3g096980
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[alignment_length] => 159
[identity_percentage] => 36.5
[species] => mtr
[common_name] => Medicago truncatula
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[EL10Ac9g21024] => Array
(
[gene_id] => EL10Ac9g21024
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[species] => bvu
[common_name] => Beta vulgaris
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[Eucgr.K01190] => Array
(
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[alignment_length] => 112
[identity_percentage] => 44.6
[species] => egr
[common_name] => Eucalyptus grandis
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(
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)
)
[FvH4_6g37630] => Array
(
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[alignment_length] => 112
[identity_percentage] => 44.6
[species] => fve
[common_name] => Fragaria vesca
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[FAN02G0831] => Array
(
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[identity_percentage] => 44.6
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[Glyma.13G254200] => Array
(
[gene_id] => Glyma.13G254200
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[alignment_length] => 154
[identity_percentage] => 37.0
[species] => gma
[common_name] => Glycine max
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[Gohir.A06G169500] => Array
(
[gene_id] => Gohir.A06G169500
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[alignment_length] => 150
[identity_percentage] => 40.0
[species] => ghi
[common_name] => Gossypium hirsutum
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(
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)
)
[Gohir.D06G177200] => Array
(
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[bit_score] => 92.0
[alignment_length] => 150
[identity_percentage] => 40.0
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[Gorai.N008100] => Array
(
[gene_id] => Gorai.N008100
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[alignment_length] => 150
[identity_percentage] => 40.0
[species] => gra
[common_name] => Gossypium raimondii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Lj5A552T18] => Array
(
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[bit_score] => 92.0
[alignment_length] => 63
[identity_percentage] => 68.3
[species] => lonja
[common_name] => Lonicera japonica
[gf] => Array
(
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)
)
[Lalb_Chr12g0202931] => Array
(
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[bit_score] => 92.0
[alignment_length] => 161
[identity_percentage] => 36.0
[species] => lal
[common_name] => Lupinus albus
[gf] => Array
(
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[ORTHOFAM] => ORTHO05D002068
)
)
[QL08p043357] => Array
(
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[bit_score] => 92.0
[alignment_length] => 112
[identity_percentage] => 44.6
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
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[ORTHOFAM] => ORTHO05D005935
)
)
[RcHm_v2.0_Chr2g0150631] => Array
(
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[alignment_length] => 112
[identity_percentage] => 44.6
[species] => rch
[common_name] => Rosa chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Sc21g0004390] => Array
(
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[bit_score] => 92.0
[alignment_length] => 112
[identity_percentage] => 45.5
[species] => sci
[common_name] => Simmondsia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[Solyc01g106360.3] => Array
(
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[alignment_length] => 418
[identity_percentage] => 23.4
[species] => sly
[common_name] => Solanum lycopersicum
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[THA.LOC104824040] => Array
(
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[alignment_length] => 112
[identity_percentage] => 44.6
[species] => tha
[common_name] => Tarenaya hassleriana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[HPP92_016787] => Array
(
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[alignment_length] => 92
[identity_percentage] => 46.7
[species] => vpl
[common_name] => Vanilla planifolia
[gf] => Array
(
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)
)
[Actinidia25415] => Array
(
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[alignment_length] => 128
[identity_percentage] => 40.6
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
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)
)
[Ciclev10014821m.g] => Array
(
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[alignment_length] => 112
[identity_percentage] => 45.5
[species] => ccl
[common_name] => Citrus clementina
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[ECA233G3159] => Array
(
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[alignment_length] => 112
[identity_percentage] => 44.6
[species] => eca
[common_name] => Erigeron canadensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Potri.018G086350] => Array
(
[gene_id] => Potri.018G086350
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[bit_score] => 91.7
[alignment_length] => 150
[identity_percentage] => 41.3
[species] => ptr
[common_name] => Populus trichocarpa
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[SGA_v2.0_scaffold20G08966] => Array
(
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[alignment_length] => 128
[identity_percentage] => 41.4
[species] => sas
[common_name] => Striga asiatica
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[TAR628G1628] => Array
(
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[bit_score] => 91.7
[alignment_length] => 269
[identity_percentage] => 29.4
[species] => tar
[common_name] => Trochodendron aralioides
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Atru.chr6.3565] => Array
(
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[bit_score] => 91.3
[alignment_length] => 112
[identity_percentage] => 45.5
[species] => acertr
[common_name] => Acer truncatum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Aqoxy6G00631] => Array
(
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[bit_score] => 91.3
[alignment_length] => 427
[identity_percentage] => 24.6
[species] => aox
[common_name] => Aquilegia oxysepala
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[A02p43320] => Array
(
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[bit_score] => 91.3
[alignment_length] => 227
[identity_percentage] => 30.4
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[BraA02t09258Z] => Array
(
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[alignment_length] => 227
[identity_percentage] => 30.4
[species] => bra
[common_name] => Brassica rapa
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[CAN.G504.50] => Array
(
[gene_id] => CAN.G504.50
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[bit_score] => 91.3
[alignment_length] => 433
[identity_percentage] => 24.9
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CARHR278410] => Array
(
[gene_id] => CARHR278410
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[bit_score] => 91.3
[alignment_length] => 408
[identity_percentage] => 26.0
[species] => chi
[common_name] => Cardamine hirsuta
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[AUR62030916] => Array
(
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[bit_score] => 91.3
[alignment_length] => 152
[identity_percentage] => 37.5
[species] => cqu
[common_name] => Chenopodium quinoa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Eucgr.I02569] => Array
(
[gene_id] => Eucgr.I02569
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[bit_score] => 91.3
[alignment_length] => 418
[identity_percentage] => 24.4
[species] => egr
[common_name] => Eucalyptus grandis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[FAN14G2675] => Array
(
[gene_id] => FAN14G2675
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[bit_score] => 91.3
[alignment_length] => 112
[identity_percentage] => 44.6
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[vmacro01903] => Array
(
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[bit_score] => 91.3
[alignment_length] => 227
[identity_percentage] => 32.2
[species] => vma
[common_name] => Vaccinium macrocarpon
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[Gohir.A13G049200] => Array
(
[gene_id] => Gohir.A13G049200
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[bit_score] => 90.9
[alignment_length] => 230
[identity_percentage] => 30.4
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Nitab4.5_0002335g0070] => Array
(
[gene_id] => Nitab4.5_0002335g0070
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[bit_score] => 90.9
[alignment_length] => 146
[identity_percentage] => 37.0
[species] => nta
[common_name] => Nicotiana tabacum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Nitab4.5_0010352g0080] => Array
(
[gene_id] => Nitab4.5_0010352g0080
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[bit_score] => 90.9
[alignment_length] => 146
[identity_percentage] => 37.0
[species] => nta
[common_name] => Nicotiana tabacum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Oeu059886.1] => Array
(
[gene_id] => Oeu059886.1
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[bit_score] => 90.5
[alignment_length] => 419
[identity_percentage] => 24.8
[species] => oeu
[common_name] => Olea europaea
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Peaxi162Scf00016g03464] => Array
(
[gene_id] => Peaxi162Scf00016g03464
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[bit_score] => 90.5
[alignment_length] => 147
[identity_percentage] => 37.4
[species] => pax
[common_name] => Petunia axillaris
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[vmacro19593] => Array
(
[gene_id] => vmacro19593
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[bit_score] => 90.5
[alignment_length] => 230
[identity_percentage] => 30.4
[species] => vma
[common_name] => Vaccinium macrocarpon
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[AUR62027076] => Array
(
[gene_id] => AUR62027076
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[bit_score] => 90.1
[alignment_length] => 152
[identity_percentage] => 37.5
[species] => cqu
[common_name] => Chenopodium quinoa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[AUR62032754] => Array
(
[gene_id] => AUR62032754
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[bit_score] => 90.1
[alignment_length] => 112
[identity_percentage] => 44.6
[species] => cqu
[common_name] => Chenopodium quinoa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[ClCG00G001670] => Array
(
[gene_id] => ClCG00G001670
[e_value] => 4.6e-16
[bit_score] => 90.1
[alignment_length] => 92
[identity_percentage] => 46.7
[species] => cla
[common_name] => Citrullus lanatus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lj9A342T54] => Array
(
[gene_id] => Lj9A342T54
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[bit_score] => 90.1
[alignment_length] => 226
[identity_percentage] => 30.5
[species] => lonja
[common_name] => Lonicera japonica
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Hund07738] => Array
(
[gene_id] => Hund07738
[e_value] => 4.6e-16
[bit_score] => 90.1
[alignment_length] => 112
[identity_percentage] => 44.6
[species] => sun
[common_name] => Selenicereus undatus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Phvul.006G199100] => Array
(
[gene_id] => Phvul.006G199100
[e_value] => 5.9e-16
[bit_score] => 89.7
[alignment_length] => 154
[identity_percentage] => 35.1
[species] => pvu
[common_name] => Phaseolus vulgaris
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Sabra18G0074600] => Array
(
[gene_id] => Sabra18G0074600
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[bit_score] => 89.7
[alignment_length] => 112
[identity_percentage] => 45.5
[species] => sbr
[common_name] => Salix brachista
[gf] => Array
(
[HOMFAM] => HOM05D003301
[ORTHOFAM] => ORTHO05D003665
)
)
[THA.LOC104805240] => Array
(
[gene_id] => THA.LOC104805240
[e_value] => 5.9e-16
[bit_score] => 89.7
[alignment_length] => 147
[identity_percentage] => 38.1
[species] => tha
[common_name] => Tarenaya hassleriana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[BcaC01g02682] => Array
(
[gene_id] => BcaC01g02682
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[bit_score] => 89.4
[alignment_length] => 146
[identity_percentage] => 36.3
[species] => bca
[common_name] => Brassica carinata
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Cpa.g.sc42.43] => Array
(
[gene_id] => Cpa.g.sc42.43
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[bit_score] => 89.4
[alignment_length] => 94
[identity_percentage] => 46.8
[species] => cpa
[common_name] => Carica papaya
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Cfa026647] => Array
(
[gene_id] => Cfa026647
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[bit_score] => 89.4
[alignment_length] => 156
[identity_percentage] => 37.8
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Dinv08963] => Array
(
[gene_id] => Dinv08963
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[bit_score] => 89.4
[alignment_length] => 229
[identity_percentage] => 29.3
[species] => din
[common_name] => Davidia involucrata
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[HPP92_006437] => Array
(
[gene_id] => HPP92_006437
[e_value] => 7.8e-16
[bit_score] => 89.4
[alignment_length] => 154
[identity_percentage] => 37.7
[species] => vpl
[common_name] => Vanilla planifolia
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[ATR0800G073] => Array
(
[gene_id] => ATR0800G073
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[bit_score] => 89.0
[alignment_length] => 155
[identity_percentage] => 34.8
[species] => atr
[common_name] => Amborella trichopoda
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Migut.B00517] => Array
(
[gene_id] => Migut.B00517
[e_value] => 1.0e-15
[bit_score] => 89.0
[alignment_length] => 420
[identity_percentage] => 25.0
[species] => egut
[common_name] => Erythranthe guttata
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Gohir.D13G047700] => Array
(
[gene_id] => Gohir.D13G047700
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[bit_score] => 89.0
[alignment_length] => 225
[identity_percentage] => 30.7
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Nn1g05689] => Array
(
[gene_id] => Nn1g05689
[e_value] => 1.0e-15
[bit_score] => 89.0
[alignment_length] => 151
[identity_percentage] => 35.1
[species] => nnu
[common_name] => Nelumbo nucifera
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[VMungo0540G1701] => Array
(
[gene_id] => VMungo0540G1701
[e_value] => 1.0e-15
[bit_score] => 89.0
[alignment_length] => 154
[identity_percentage] => 35.1
[species] => vmu
[common_name] => Vigna mungo
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Ah.01g024200] => Array
(
[gene_id] => Ah.01g024200
[e_value] => 1.3e-15
[bit_score] => 88.6
[alignment_length] => 136
[identity_percentage] => 37.5
[species] => amhyb
[common_name] => Amaranthus hybridus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[arahy.Tifrunner.gnm1.ann1.3DT0RH] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.3DT0RH
[e_value] => 1.3e-15
[bit_score] => 88.6
[alignment_length] => 154
[identity_percentage] => 35.7
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Peaxi162Scf00152g00738] => Array
(
[gene_id] => Peaxi162Scf00152g00738
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[bit_score] => 88.6
[alignment_length] => 150
[identity_percentage] => 34.7
[species] => pax
[common_name] => Petunia axillaris
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[SalBow6G5084] => Array
(
[gene_id] => SalBow6G5084
[e_value] => 1.3e-15
[bit_score] => 88.6
[alignment_length] => 257
[identity_percentage] => 28.8
[species] => sbo
[common_name] => Salvia bowleyana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Lj6g0027071] => Array
(
[gene_id] => Lj6g0027071
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[bit_score] => 88.2
[alignment_length] => 154
[identity_percentage] => 36.4
[species] => lja
[common_name] => Lotus japonicus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Sed0004824] => Array
(
[gene_id] => Sed0004824
[e_value] => 1.7e-15
[bit_score] => 88.2
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => sed
[common_name] => Sechium edule
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[EL10Ac9g22131] => Array
(
[gene_id] => EL10Ac9g22131
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[bit_score] => 87.8
[alignment_length] => 196
[identity_percentage] => 33.7
[species] => bvu
[common_name] => Beta vulgaris
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[ECA236G0460] => Array
(
[gene_id] => ECA236G0460
[e_value] => 2.3e-15
[bit_score] => 87.8
[alignment_length] => 151
[identity_percentage] => 35.8
[species] => eca
[common_name] => Erigeron canadensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Lsat_1_v5_gn_5_110881] => Array
(
[gene_id] => Lsat_1_v5_gn_5_110881
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[bit_score] => 87.8
[alignment_length] => 218
[identity_percentage] => 30.3
[species] => lsa
[common_name] => Lactuca sativa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Os04g0102700] => Array
(
[gene_id] => Os04g0102700
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[bit_score] => 87.8
[alignment_length] => 141
[identity_percentage] => 36.2
[species] => osa
[common_name] => Oryza sativa ssp. japonica
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Hund00402] => Array
(
[gene_id] => Hund00402
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[bit_score] => 87.8
[alignment_length] => 190
[identity_percentage] => 33.2
[species] => sun
[common_name] => Selenicereus undatus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Aqoxy425s001] => Array
(
[gene_id] => Aqoxy425s001
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[bit_score] => 87.4
[alignment_length] => 204
[identity_percentage] => 32.4
[species] => aox
[common_name] => Aquilegia oxysepala
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[BcaB07g29744] => Array
(
[gene_id] => BcaB07g29744
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[bit_score] => 87.4
[alignment_length] => 139
[identity_percentage] => 38.1
[species] => bca
[common_name] => Brassica carinata
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Lsat_1_v5_gn_7_83060] => Array
(
[gene_id] => Lsat_1_v5_gn_7_83060
[e_value] => 3.0e-15
[bit_score] => 87.4
[alignment_length] => 228
[identity_percentage] => 27.6
[species] => lsa
[common_name] => Lactuca sativa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Nitab4.5_0009020g0080] => Array
(
[gene_id] => Nitab4.5_0009020g0080
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[bit_score] => 87.4
[alignment_length] => 152
[identity_percentage] => 34.9
[species] => nta
[common_name] => Nicotiana tabacum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Pp3c23_9920] => Array
(
[gene_id] => Pp3c23_9920
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[bit_score] => 87.4
[alignment_length] => 146
[identity_percentage] => 34.9
[species] => ppa
[common_name] => Physcomitrium patens
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[GSVIVG01038529001] => Array
(
[gene_id] => GSVIVG01038529001
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[bit_score] => 87.4
[alignment_length] => 225
[identity_percentage] => 31.1
[species] => vvi
[common_name] => Vitis vinifera
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[AL8G41810] => Array
(
[gene_id] => AL8G41810
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[bit_score] => 87.0
[alignment_length] => 151
[identity_percentage] => 34.4
[species] => aly
[common_name] => Arabidopsis lyrata
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CBR_g36483] => Array
(
[gene_id] => CBR_g36483
[e_value] => 3.9e-15
[bit_score] => 87.0
[alignment_length] => 154
[identity_percentage] => 37.0
[species] => cbr
[common_name] => Chara braunii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D133657
)
)
[Cc02_g20550] => Array
(
[gene_id] => Cc02_g20550
[e_value] => 3.9e-15
[bit_score] => 87.0
[alignment_length] => 150
[identity_percentage] => 34.7
[species] => ccan
[common_name] => Coffea canephora
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Nitab4.5_0010352g0070] => Array
(
[gene_id] => Nitab4.5_0010352g0070
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[bit_score] => 87.0
[alignment_length] => 136
[identity_percentage] => 39.7
[species] => nta
[common_name] => Nicotiana tabacum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Pp3s32_288] => Array
(
[gene_id] => Pp3s32_288
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[bit_score] => 87.0
[alignment_length] => 111
[identity_percentage] => 43.2
[species] => ppa
[common_name] => Physcomitrium patens
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Prupe.8G076300] => Array
(
[gene_id] => Prupe.8G076300
[e_value] => 3.9e-15
[bit_score] => 87.0
[alignment_length] => 270
[identity_percentage] => 28.1
[species] => ppe
[common_name] => Prunus persica
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Rhsim05G0095600] => Array
(
[gene_id] => Rhsim05G0095600
[e_value] => 3.9e-15
[bit_score] => 87.0
[alignment_length] => 226
[identity_percentage] => 29.6
[species] => rsi
[common_name] => Rhododendron simsii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[AagrBONN_evm.TU.Sc2ySwM_362.1093] => Array
(
[gene_id] => AagrBONN_evm.TU.Sc2ySwM_362.1093
[e_value] => 5.0e-15
[bit_score] => 86.7
[alignment_length] => 158
[identity_percentage] => 38.0
[species] => aag
[common_name] => Anthoceros agrestis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[BcaC06g32446] => Array
(
[gene_id] => BcaC06g32446
[e_value] => 5.0e-15
[bit_score] => 86.7
[alignment_length] => 152
[identity_percentage] => 34.2
[species] => bca
[common_name] => Brassica carinata
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Carub.0008s2524] => Array
(
[gene_id] => Carub.0008s2524
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[bit_score] => 86.7
[alignment_length] => 151
[identity_percentage] => 35.1
[species] => cru
[common_name] => Capsella rubella
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CAN.G1191.9] => Array
(
[gene_id] => CAN.G1191.9
[e_value] => 5.0e-15
[bit_score] => 86.7
[alignment_length] => 93
[identity_percentage] => 48.4
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[ClCG10G003620] => Array
(
[gene_id] => ClCG10G003620
[e_value] => 5.0e-15
[bit_score] => 86.7
[alignment_length] => 156
[identity_percentage] => 35.3
[species] => cla
[common_name] => Citrullus lanatus
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[DCAR_029282] => Array
(
[gene_id] => DCAR_029282
[e_value] => 5.0e-15
[bit_score] => 86.7
[alignment_length] => 151
[identity_percentage] => 35.1
[species] => dca
[common_name] => Daucus carota
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Psat7g040200] => Array
(
[gene_id] => Psat7g040200
[e_value] => 5.0e-15
[bit_score] => 86.7
[alignment_length] => 156
[identity_percentage] => 34.6
[species] => psa
[common_name] => Pisum sativum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[AT5G64440] => Array
(
[gene_id] => AT5G64440
[e_value] => 6.6e-15
[bit_score] => 86.3
[alignment_length] => 151
[identity_percentage] => 34.4
[species] => ath
[common_name] => Arabidopsis thaliana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Oeu032122.1] => Array
(
[gene_id] => Oeu032122.1
[e_value] => 6.6e-15
[bit_score] => 86.3
[alignment_length] => 100
[identity_percentage] => 47.0
[species] => oeu
[common_name] => Olea europaea
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Peaxi162Scf00299g00236] => Array
(
[gene_id] => Peaxi162Scf00299g00236
[e_value] => 6.6e-15
[bit_score] => 86.3
[alignment_length] => 151
[identity_percentage] => 34.4
[species] => pax
[common_name] => Petunia axillaris
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Lj4g0008483] => Array
(
[gene_id] => Lj4g0008483
[e_value] => 8.6e-15
[bit_score] => 85.9
[alignment_length] => 153
[identity_percentage] => 35.3
[species] => lja
[common_name] => Lotus japonicus
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[MD05G1050200] => Array
(
[gene_id] => MD05G1050200
[e_value] => 8.6e-15
[bit_score] => 85.9
[alignment_length] => 225
[identity_percentage] => 30.7
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[SEGI_17157] => Array
(
[gene_id] => SEGI_17157
[e_value] => 8.6e-15
[bit_score] => 85.9
[alignment_length] => 140
[identity_percentage] => 37.9
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CAN.G1008.41] => Array
(
[gene_id] => CAN.G1008.41
[e_value] => 1.1e-14
[bit_score] => 85.5
[alignment_length] => 156
[identity_percentage] => 35.3
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[MELO3C014033.2] => Array
(
[gene_id] => MELO3C014033.2
[e_value] => 1.1e-14
[bit_score] => 85.5
[alignment_length] => 156
[identity_percentage] => 35.3
[species] => cme
[common_name] => Cucumis melo
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Hma1.2p1_1333F.1_g276230] => Array
(
[gene_id] => Hma1.2p1_1333F.1_g276230
[e_value] => 1.1e-14
[bit_score] => 85.5
[alignment_length] => 153
[identity_percentage] => 35.3
[species] => hma
[common_name] => Hydrangea macrophylla
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Lsat_1_v5_gn_5_9480] => Array
(
[gene_id] => Lsat_1_v5_gn_5_9480
[e_value] => 1.1e-14
[bit_score] => 85.5
[alignment_length] => 155
[identity_percentage] => 34.2
[species] => lsa
[common_name] => Lactuca sativa
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[TPR.G13547] => Array
(
[gene_id] => TPR.G13547
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[bit_score] => 85.5
[alignment_length] => 199
[identity_percentage] => 31.7
[species] => tpr
[common_name] => Trifolium pratense
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[HPP92_017097] => Array
(
[gene_id] => HPP92_017097
[e_value] => 1.1e-14
[bit_score] => 85.5
[alignment_length] => 136
[identity_percentage] => 37.5
[species] => vpl
[common_name] => Vanilla planifolia
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[HPP92_017107] => Array
(
[gene_id] => HPP92_017107
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[bit_score] => 85.5
[alignment_length] => 136
[identity_percentage] => 37.5
[species] => vpl
[common_name] => Vanilla planifolia
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[BcaC06g32445] => Array
(
[gene_id] => BcaC06g32445
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[bit_score] => 85.1
[alignment_length] => 153
[identity_percentage] => 34.6
[species] => bca
[common_name] => Brassica carinata
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[CDE04G3774] => Array
(
[gene_id] => CDE04G3774
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[bit_score] => 85.1
[alignment_length] => 136
[identity_percentage] => 36.8
[species] => cde
[common_name] => Ceratophyllum demersum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CsaV3_3G003620] => Array
(
[gene_id] => CsaV3_3G003620
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[bit_score] => 85.1
[alignment_length] => 156
[identity_percentage] => 35.3
[species] => csa
[common_name] => Cucumis sativus L.
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Hma1.2p1_1242F.1_g269870] => Array
(
[gene_id] => Hma1.2p1_1242F.1_g269870
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[bit_score] => 85.1
[alignment_length] => 153
[identity_percentage] => 35.3
[species] => hma
[common_name] => Hydrangea macrophylla
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Lalb_Chr07g0183921] => Array
(
[gene_id] => Lalb_Chr07g0183921
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[bit_score] => 85.1
[alignment_length] => 152
[identity_percentage] => 34.2
[species] => lal
[common_name] => Lupinus albus
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Mapoly0080s0043] => Array
(
[gene_id] => Mapoly0080s0043
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[bit_score] => 85.1
[alignment_length] => 136
[identity_percentage] => 38.2
[species] => mpo
[common_name] => Marchantia polymorpha
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D048805
)
)
[TPR.G12739] => Array
(
[gene_id] => TPR.G12739
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[bit_score] => 85.1
[alignment_length] => 156
[identity_percentage] => 34.6
[species] => tpr
[common_name] => Trifolium pratense
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[A10p29110] => Array
(
[gene_id] => A10p29110
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[bit_score] => 84.7
[alignment_length] => 153
[identity_percentage] => 34.6
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[C09p69500] => Array
(
[gene_id] => C09p69500
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[bit_score] => 84.7
[alignment_length] => 153
[identity_percentage] => 34.6
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[BolC9t59694H] => Array
(
[gene_id] => BolC9t59694H
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[bit_score] => 84.7
[alignment_length] => 153
[identity_percentage] => 34.6
[species] => bol
[common_name] => Brassica oleracea
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[BraA10t44960Z] => Array
(
[gene_id] => BraA10t44960Z
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[bit_score] => 84.7
[alignment_length] => 153
[identity_percentage] => 34.6
[species] => bra
[common_name] => Brassica rapa
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[CiPaw.05G026300] => Array
(
[gene_id] => CiPaw.05G026300
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[bit_score] => 84.7
[alignment_length] => 146
[identity_percentage] => 33.6
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[ECA234G3918] => Array
(
[gene_id] => ECA234G3918
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[bit_score] => 84.7
[alignment_length] => 196
[identity_percentage] => 31.1
[species] => eca
[common_name] => Erigeron canadensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Migut.I00655] => Array
(
[gene_id] => Migut.I00655
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[bit_score] => 84.7
[alignment_length] => 156
[identity_percentage] => 34.6
[species] => egut
[common_name] => Erythranthe guttata
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[HanXRQChr10g0291231] => Array
(
[gene_id] => HanXRQChr10g0291231
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[bit_score] => 84.7
[alignment_length] => 225
[identity_percentage] => 29.8
[species] => han
[common_name] => Helianthus annuus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Lj5A225G70] => Array
(
[gene_id] => Lj5A225G70
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[bit_score] => 84.7
[alignment_length] => 152
[identity_percentage] => 34.2
[species] => lonja
[common_name] => Lonicera japonica
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Sp6g35510] => Array
(
[gene_id] => Sp6g35510
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[bit_score] => 84.7
[alignment_length] => 153
[identity_percentage] => 35.3
[species] => spa
[common_name] => Schrenkiella parvula
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Actinidia16517] => Array
(
[gene_id] => Actinidia16517
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[bit_score] => 84.3
[alignment_length] => 142
[identity_percentage] => 39.4
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Ca_16815_v3] => Array
(
[gene_id] => Ca_16815_v3
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[bit_score] => 84.3
[alignment_length] => 155
[identity_percentage] => 32.9
[species] => car
[common_name] => Cicer arietinum L.
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Cc05_g09120] => Array
(
[gene_id] => Cc05_g09120
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[bit_score] => 84.3
[alignment_length] => 77
[identity_percentage] => 54.5
[species] => ccan
[common_name] => Coffea canephora
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[ECA246G4936] => Array
(
[gene_id] => ECA246G4936
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[bit_score] => 84.3
[alignment_length] => 155
[identity_percentage] => 34.2
[species] => eca
[common_name] => Erigeron canadensis
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Lj6g0005814] => Array
(
[gene_id] => Lj6g0005814
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[bit_score] => 84.3
[alignment_length] => 97
[identity_percentage] => 51.5
[species] => lja
[common_name] => Lotus japonicus
[gf] => Array
(
[HOMFAM] => HOM05D000746
[ORTHOFAM] => ORTHO05D000573
)
)
[Solyc01g106350.4] => Array
(
[gene_id] => Solyc01g106350.4
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[bit_score] => 84.3
[alignment_length] => 152
[identity_percentage] => 34.2
[species] => sly
[common_name] => Solanum lycopersicum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[GSVIVG01019287001] => Array
(
[gene_id] => GSVIVG01019287001
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[bit_score] => 84.3
[alignment_length] => 154
[identity_percentage] => 35.7
[species] => vvi
[common_name] => Vitis vinifera
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[C02p63380] => Array
(
[gene_id] => C02p63380
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[bit_score] => 84.0
[alignment_length] => 232
[identity_percentage] => 29.7
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[BraA10t44834Z] => Array
(
[gene_id] => BraA10t44834Z
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[bit_score] => 84.0
[alignment_length] => 101
[identity_percentage] => 41.6
[species] => bra
[common_name] => Brassica rapa
[gf] => Array
(
[HOMFAM] => HOM05D000579
[ORTHOFAM] => ORTHO05D000741
)
)
[CiPaw.05G026500] => Array
(
[gene_id] => CiPaw.05G026500
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[bit_score] => 84.0
[alignment_length] => 146
[identity_percentage] => 33.6
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CDE07G0825] => Array
(
[gene_id] => CDE07G0825
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[bit_score] => 84.0
[alignment_length] => 136
[identity_percentage] => 36.0
[species] => cde
[common_name] => Ceratophyllum demersum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[unitig_8.g3049] => Array
(
[gene_id] => unitig_8.g3049
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[bit_score] => 84.0
[alignment_length] => 154
[identity_percentage] => 37.7
[species] => ugi
[common_name] => Utricularia gibba
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[CARHR205790] => Array
(
[gene_id] => CARHR205790
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[bit_score] => 83.6
[alignment_length] => 156
[identity_percentage] => 34.0
[species] => chi
[common_name] => Cardamine hirsuta
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Glyma.05G199000] => Array
(
[gene_id] => Glyma.05G199000
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[bit_score] => 83.6
[alignment_length] => 153
[identity_percentage] => 34.6
[species] => gma
[common_name] => Glycine max
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[PGSC0003DMG400014230] => Array
(
[gene_id] => PGSC0003DMG400014230
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[bit_score] => 83.6
[alignment_length] => 155
[identity_percentage] => 34.8
[species] => stu
[common_name] => Solanum tuberosum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[VMungo0251G2939] => Array
(
[gene_id] => VMungo0251G2939
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[bit_score] => 83.6
[alignment_length] => 153
[identity_percentage] => 34.6
[species] => vmu
[common_name] => Vigna mungo
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[BolC2t12406H] => Array
(
[gene_id] => BolC2t12406H
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[bit_score] => 83.2
[alignment_length] => 228
[identity_percentage] => 29.8
[species] => bol
[common_name] => Brassica oleracea
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[MBI16_g44751_MAGBIO] => Array
(
[gene_id] => MBI16_g44751_MAGBIO
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[bit_score] => 83.2
[alignment_length] => 141
[identity_percentage] => 36.9
[species] => mbi
[common_name] => Magnolia biondii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Solyc03g118030.3] => Array
(
[gene_id] => Solyc03g118030.3
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[bit_score] => 83.2
[alignment_length] => 156
[identity_percentage] => 34.0
[species] => sly
[common_name] => Solanum lycopersicum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Sopen03g036930] => Array
(
[gene_id] => Sopen03g036930
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[bit_score] => 83.2
[alignment_length] => 156
[identity_percentage] => 34.0
[species] => spe
[common_name] => Solanum pennellii
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[TAR633G0377] => Array
(
[gene_id] => TAR633G0377
[e_value] => 5.6e-14
[bit_score] => 83.2
[alignment_length] => 153
[identity_percentage] => 34.6
[species] => tar
[common_name] => Trochodendron aralioides
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[AagrBONN_evm.TU.Sc2ySwM_340.411] => Array
(
[gene_id] => AagrBONN_evm.TU.Sc2ySwM_340.411
[e_value] => 7.3e-14
[bit_score] => 82.8
[alignment_length] => 146
[identity_percentage] => 34.9
[species] => aag
[common_name] => Anthoceros agrestis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[AT5G07360] => Array
(
[gene_id] => AT5G07360
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[bit_score] => 82.8
[alignment_length] => 153
[identity_percentage] => 35.3
[species] => ath
[common_name] => Arabidopsis thaliana
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[MSTRG.16638] => Array
(
[gene_id] => MSTRG.16638
[e_value] => 7.3e-14
[bit_score] => 82.8
[alignment_length] => 151
[identity_percentage] => 34.4
[species] => ama
[common_name] => Avicennia marina
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CSS0000304] => Array
(
[gene_id] => CSS0000304
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[bit_score] => 82.8
[alignment_length] => 140
[identity_percentage] => 37.9
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Cc00_g26370] => Array
(
[gene_id] => Cc00_g26370
[e_value] => 7.3e-14
[bit_score] => 82.8
[alignment_length] => 156
[identity_percentage] => 38.5
[species] => ccan
[common_name] => Coffea canephora
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[COL.COLO4_37281] => Array
(
[gene_id] => COL.COLO4_37281
[e_value] => 7.3e-14
[bit_score] => 82.8
[alignment_length] => 153
[identity_percentage] => 34.0
[species] => col
[common_name] => Corchorus olitorius
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Nn3g16200] => Array
(
[gene_id] => Nn3g16200
[e_value] => 7.3e-14
[bit_score] => 82.8
[alignment_length] => 154
[identity_percentage] => 35.1
[species] => nnu
[common_name] => Nelumbo nucifera
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Peaxi162Scf00314g00734] => Array
(
[gene_id] => Peaxi162Scf00314g00734
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[bit_score] => 82.8
[alignment_length] => 156
[identity_percentage] => 34.6
[species] => pax
[common_name] => Petunia axillaris
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[SMO347G0405] => Array
(
[gene_id] => SMO347G0405
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[bit_score] => 82.8
[alignment_length] => 194
[identity_percentage] => 33.5
[species] => smo
[common_name] => Selaginella moellendorffii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[SGA_v2.0_scaffold342G49396] => Array
(
[gene_id] => SGA_v2.0_scaffold342G49396
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[bit_score] => 82.8
[alignment_length] => 151
[identity_percentage] => 33.8
[species] => sas
[common_name] => Striga asiatica
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[GSVIVG01019284001] => Array
(
[gene_id] => GSVIVG01019284001
[e_value] => 7.3e-14
[bit_score] => 82.8
[alignment_length] => 153
[identity_percentage] => 34.0
[species] => vvi
[common_name] => Vitis vinifera
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[arahy.Tifrunner.gnm1.ann1.38K6F5] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.38K6F5
[e_value] => 9.5e-14
[bit_score] => 82.4
[alignment_length] => 45
[identity_percentage] => 84.4
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D000868
[ORTHOFAM] => ORTHO05D000711
)
)
[arahy.Tifrunner.gnm1.ann1.ZLV2ZH] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.ZLV2ZH
[e_value] => 9.5e-14
[bit_score] => 82.4
[alignment_length] => 45
[identity_percentage] => 84.4
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[MSTRG.20250] => Array
(
[gene_id] => MSTRG.20250
[e_value] => 9.5e-14
[bit_score] => 82.4
[alignment_length] => 151
[identity_percentage] => 33.8
[species] => ama
[common_name] => Avicennia marina
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Phvul.002G280000] => Array
(
[gene_id] => Phvul.002G280000
[e_value] => 9.5e-14
[bit_score] => 82.4
[alignment_length] => 153
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(
[HOMFAM] => HOM05D005461
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)
)
[Sc04g0000020] => Array
(
[gene_id] => Sc04g0000020
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[identity_percentage] => 33.5
[species] => sci
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(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Sc04g0000060] => Array
(
[gene_id] => Sc04g0000060
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[identity_percentage] => 33.5
[species] => sci
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(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[VMungo0540G0597] => Array
(
[gene_id] => VMungo0540G0597
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[bit_score] => 82.4
[alignment_length] => 74
[identity_percentage] => 55.4
[species] => vmu
[common_name] => Vigna mungo
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(
[HOMFAM] => HOM05D001206
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)
)
[Aa31LG3G19010] => Array
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[gene_id] => Aa31LG3G19010
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[bit_score] => 82.0
[alignment_length] => 153
[identity_percentage] => 34.6
[species] => aar
[common_name] => Aethionema arabicum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[arahy.Tifrunner.gnm1.ann1.UDW2VH] => Array
(
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[alignment_length] => 153
[identity_percentage] => 35.3
[species] => arhy
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[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[arahy.Tifrunner.gnm1.ann1.YX3IJQ] => Array
(
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[alignment_length] => 153
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(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Carub.0006s0633] => Array
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[gene_id] => Carub.0006s0633
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[bit_score] => 82.0
[alignment_length] => 153
[identity_percentage] => 34.6
[species] => cru
[common_name] => Capsella rubella
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Thhalv10012903m.g] => Array
(
[gene_id] => Thhalv10012903m.g
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[alignment_length] => 153
[identity_percentage] => 34.0
[species] => esa
[common_name] => Eutrema salsugineum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[MBI07_g42016_MAGBIO] => Array
(
[gene_id] => MBI07_g42016_MAGBIO
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[alignment_length] => 154
[identity_percentage] => 37.0
[species] => mbi
[common_name] => Magnolia biondii
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[QL10p000170] => Array
(
[gene_id] => QL10p000170
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[alignment_length] => 153
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[species] => qlo
[common_name] => Quercus lobata
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(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[SalBow7G2149] => Array
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[gene_id] => SalBow7G2149
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[alignment_length] => 154
[identity_percentage] => 33.8
[species] => sbo
[common_name] => Salvia bowleyana
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[EL10Ac5g11262] => Array
(
[gene_id] => EL10Ac5g11262
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[bit_score] => 81.6
[alignment_length] => 152
[identity_percentage] => 34.2
[species] => bvu
[common_name] => Beta vulgaris
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Gohir.D04G165100] => Array
(
[gene_id] => Gohir.D04G165100
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[bit_score] => 81.6
[alignment_length] => 154
[identity_percentage] => 33.1
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Gorai.012G153500] => Array
(
[gene_id] => Gorai.012G153500
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[bit_score] => 81.6
[alignment_length] => 154
[identity_percentage] => 33.1
[species] => gra
[common_name] => Gossypium raimondii
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Nitab4.5_0011048g0010] => Array
(
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[bit_score] => 81.6
[alignment_length] => 156
[identity_percentage] => 35.3
[species] => nta
[common_name] => Nicotiana tabacum
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(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Oeu012857.1] => Array
(
[gene_id] => Oeu012857.1
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[alignment_length] => 153
[identity_percentage] => 34.0
[species] => oeu
[common_name] => Olea europaea
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Potri.015G109400] => Array
(
[gene_id] => Potri.015G109400
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[bit_score] => 81.6
[alignment_length] => 153
[identity_percentage] => 33.3
[species] => ptr
[common_name] => Populus trichocarpa
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[vmacro12422] => Array
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[alignment_length] => 84
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[species] => vma
[common_name] => Vaccinium macrocarpon
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[HOMFAM] => HOM05D001206
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)
)
[vmacro12423] => Array
(
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[species] => vma
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(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[CSS0038399] => Array
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[gene_id] => CSS0038399
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[alignment_length] => 156
[identity_percentage] => 33.3
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
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(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Cpa.g.sc42.44] => Array
(
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[alignment_length] => 101
[identity_percentage] => 42.6
[species] => cpa
[common_name] => Carica papaya
[gf] => Array
(
[HOMFAM] => HOM05D001310
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)
)
[Eucgr.K02184] => Array
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[bit_score] => 81.3
[alignment_length] => 152
[identity_percentage] => 33.6
[species] => egr
[common_name] => Eucalyptus grandis
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(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[HanXRQChr06g0183731] => Array
(
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[bit_score] => 81.3
[alignment_length] => 156
[identity_percentage] => 33.3
[species] => han
[common_name] => Helianthus annuus
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Medtr8g095600] => Array
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[bit_score] => 81.3
[alignment_length] => 153
[identity_percentage] => 33.3
[species] => mtr
[common_name] => Medicago truncatula
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(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Nitab4.5_0002027g0090] => Array
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[alignment_length] => 74
[identity_percentage] => 54.1
[species] => nta
[common_name] => Nicotiana tabacum
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(
[HOMFAM] => HOM05D001206
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)
)
[Rhsim08G0199900] => Array
(
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[bit_score] => 81.3
[alignment_length] => 154
[identity_percentage] => 33.8
[species] => rsi
[common_name] => Rhododendron simsii
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Aqoxy5G02973] => Array
(
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[bit_score] => 80.9
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[identity_percentage] => 33.3
[species] => aox
[common_name] => Aquilegia oxysepala
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(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[CiPaw.11G031400] => Array
(
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[bit_score] => 80.9
[alignment_length] => 154
[identity_percentage] => 33.8
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[DCAR_016327] => Array
(
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[bit_score] => 80.9
[alignment_length] => 153
[identity_percentage] => 34.0
[species] => dca
[common_name] => Daucus carota
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(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Nitab4.5_0000976g0230] => Array
(
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[alignment_length] => 156
[identity_percentage] => 34.6
[species] => nta
[common_name] => Nicotiana tabacum
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(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Prupe.5G138700] => Array
(
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[identity_percentage] => 33.6
[species] => ppe
[common_name] => Prunus persica
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(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[RcHm_v2.0_Chr7g0188291] => Array
(
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[identity_percentage] => 33.6
[species] => rch
[common_name] => Rosa chinensis
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[TWI23G0268] => Array
(
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[bit_score] => 80.9
[alignment_length] => 153
[identity_percentage] => 34.6
[species] => twi
[common_name] => Tripterygium wilfordii
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[TAR381G1166] => Array
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[gene_id] => TAR381G1166
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[bit_score] => 80.9
[alignment_length] => 156
[identity_percentage] => 38.5
[species] => tar
[common_name] => Trochodendron aralioides
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(
[HOMFAM] => HOM05D001375
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)
)
[vmacro19100] => Array
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[alignment_length] => 155
[identity_percentage] => 34.2
[species] => vma
[common_name] => Vaccinium macrocarpon
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Zm00001eb197940] => Array
(
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[alignment_length] => 155
[identity_percentage] => 32.9
[species] => zma
[common_name] => Zea mays
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[ATR0582G258] => Array
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[bit_score] => 80.5
[alignment_length] => 152
[identity_percentage] => 34.9
[species] => atr
[common_name] => Amborella trichopoda
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[MSTRG.22823] => Array
(
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[bit_score] => 80.5
[alignment_length] => 153
[identity_percentage] => 33.3
[species] => ama
[common_name] => Avicennia marina
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Peaxi162Scf00684g00028] => Array
(
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[alignment_length] => 157
[identity_percentage] => 37.6
[species] => pax
[common_name] => Petunia axillaris
[gf] => Array
(
[HOMFAM] => HOM05D001375
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)
)
[HanXRQChr08g0227111] => Array
(
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[bit_score] => 80.1
[alignment_length] => 176
[identity_percentage] => 32.4
[species] => han
[common_name] => Helianthus annuus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Nitab4.5_0002679g0030] => Array
(
[gene_id] => Nitab4.5_0002679g0030
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[bit_score] => 80.1
[alignment_length] => 153
[identity_percentage] => 34.6
[species] => nta
[common_name] => Nicotiana tabacum
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(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Nitab4.5_0006854g0050] => Array
(
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[bit_score] => 80.1
[alignment_length] => 142
[identity_percentage] => 35.2
[species] => nta
[common_name] => Nicotiana tabacum
[gf] => Array
(
[HOMFAM] => HOM05D001206
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)
)
[PRCOL_00006355] => Array
(
[gene_id] => PRCOL_00006355
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[bit_score] => 80.1
[alignment_length] => 133
[identity_percentage] => 39.8
[species] => pco
[common_name] => Prasinoderma coloniale
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D001717
)
)
[Prupe.8G161800] => Array
(
[gene_id] => Prupe.8G161800
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[bit_score] => 80.1
[alignment_length] => 161
[identity_percentage] => 36.0
[species] => ppe
[common_name] => Prunus persica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[SMO137G0127] => Array
(
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[bit_score] => 80.1
[alignment_length] => 163
[identity_percentage] => 38.7
[species] => smo
[common_name] => Selaginella moellendorffii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PGSC0003DMG400001625] => Array
(
[gene_id] => PGSC0003DMG400001625
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[bit_score] => 80.1
[alignment_length] => 187
[identity_percentage] => 34.2
[species] => stu
[common_name] => Solanum tuberosum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Thecc.03G143100] => Array
(
[gene_id] => Thecc.03G143100
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[bit_score] => 80.1
[alignment_length] => 152
[identity_percentage] => 32.9
[species] => tca
[common_name] => Theobroma cacao
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Aa31LG1G5760] => Array
(
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[bit_score] => 79.7
[alignment_length] => 153
[identity_percentage] => 34.0
[species] => aar
[common_name] => Aethionema arabicum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[CSS0050110] => Array
(
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[bit_score] => 79.7
[alignment_length] => 156
[identity_percentage] => 32.7
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[ClCG00G000370] => Array
(
[gene_id] => ClCG00G000370
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[bit_score] => 79.7
[alignment_length] => 175
[identity_percentage] => 32.6
[species] => cla
[common_name] => Citrullus lanatus
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[DCAR_005955] => Array
(
[gene_id] => DCAR_005955
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[bit_score] => 79.7
[alignment_length] => 164
[identity_percentage] => 37.8
[species] => dca
[common_name] => Daucus carota
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PSO017G0101] => Array
(
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[bit_score] => 79.7
[alignment_length] => 153
[identity_percentage] => 34.6
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[PSO478G5039] => Array
(
[gene_id] => PSO478G5039
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[bit_score] => 79.7
[alignment_length] => 153
[identity_percentage] => 34.6
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Atru.chr6.1950] => Array
(
[gene_id] => Atru.chr6.1950
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[bit_score] => 79.3
[alignment_length] => 152
[identity_percentage] => 32.9
[species] => acertr
[common_name] => Acer truncatum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Actinidia00326] => Array
(
[gene_id] => Actinidia00326
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[bit_score] => 79.3
[alignment_length] => 366
[identity_percentage] => 22.7
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Cpa.g.sc13.197] => Array
(
[gene_id] => Cpa.g.sc13.197
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[bit_score] => 79.3
[alignment_length] => 153
[identity_percentage] => 33.3
[species] => cpa
[common_name] => Carica papaya
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Cfa018691] => Array
(
[gene_id] => Cfa018691
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[bit_score] => 79.3
[alignment_length] => 153
[identity_percentage] => 33.3
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[FvH4_5g09971] => Array
(
[gene_id] => FvH4_5g09971
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[bit_score] => 79.3
[alignment_length] => 156
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[species] => fve
[common_name] => Fragaria vesca
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[FAN08G1284] => Array
(
[gene_id] => FAN08G1284
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[bit_score] => 79.3
[alignment_length] => 156
[identity_percentage] => 32.7
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[AL6G17660] => Array
(
[gene_id] => AL6G17660
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[bit_score] => 79.0
[alignment_length] => 153
[identity_percentage] => 33.3
[species] => aly
[common_name] => Arabidopsis lyrata
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[CAN.G1089.9] => Array
(
[gene_id] => CAN.G1089.9
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[bit_score] => 79.0
[alignment_length] => 153
[identity_percentage] => 34.0
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[PSO210G4012] => Array
(
[gene_id] => PSO210G4012
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[alignment_length] => 156
[identity_percentage] => 37.2
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Sabra15G0131600] => Array
(
[gene_id] => Sabra15G0131600
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[bit_score] => 79.0
[alignment_length] => 153
[identity_percentage] => 33.3
[species] => sbr
[common_name] => Salix brachista
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Sc08g0003140] => Array
(
[gene_id] => Sc08g0003140
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[bit_score] => 79.0
[alignment_length] => 157
[identity_percentage] => 39.5
[species] => sci
[common_name] => Simmondsia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Sopen06g025970] => Array
(
[gene_id] => Sopen06g025970
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[bit_score] => 79.0
[alignment_length] => 153
[identity_percentage] => 34.6
[species] => spe
[common_name] => Solanum pennellii
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[TPR.G14752] => Array
(
[gene_id] => TPR.G14752
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[alignment_length] => 81
[identity_percentage] => 49.4
[species] => tpr
[common_name] => Trifolium pratense
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Atru.chr5.3247] => Array
(
[gene_id] => Atru.chr5.3247
[e_value] => 1.4e-12
[bit_score] => 78.6
[alignment_length] => 171
[identity_percentage] => 34.5
[species] => acertr
[common_name] => Acer truncatum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[AagrBONN_evm.TU.Sc2ySwM_228.2736] => Array
(
[gene_id] => AagrBONN_evm.TU.Sc2ySwM_228.2736
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[bit_score] => 78.6
[alignment_length] => 343
[identity_percentage] => 25.4
[species] => aag
[common_name] => Anthoceros agrestis
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Aqoxy3G02448] => Array
(
[gene_id] => Aqoxy3G02448
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[bit_score] => 78.6
[alignment_length] => 162
[identity_percentage] => 37.7
[species] => aox
[common_name] => Aquilegia oxysepala
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Ciclev10030921m.g] => Array
(
[gene_id] => Ciclev10030921m.g
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[bit_score] => 78.6
[alignment_length] => 153
[identity_percentage] => 32.7
[species] => ccl
[common_name] => Citrus clementina
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Hund02520] => Array
(
[gene_id] => Hund02520
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[bit_score] => 78.6
[alignment_length] => 151
[identity_percentage] => 33.8
[species] => sun
[common_name] => Selenicereus undatus
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[TAR628G0562] => Array
(
[gene_id] => TAR628G0562
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[bit_score] => 78.6
[alignment_length] => 156
[identity_percentage] => 37.2
[species] => tar
[common_name] => Trochodendron aralioides
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cc02_g29320] => Array
(
[gene_id] => Cc02_g29320
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[bit_score] => 78.2
[alignment_length] => 119
[identity_percentage] => 41.2
[species] => ccan
[common_name] => Coffea canephora
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cc04_g05620] => Array
(
[gene_id] => Cc04_g05620
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[bit_score] => 78.2
[alignment_length] => 153
[identity_percentage] => 33.3
[species] => ccan
[common_name] => Coffea canephora
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[MBI09_g15954_MAGBIO] => Array
(
[gene_id] => MBI09_g15954_MAGBIO
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[bit_score] => 78.2
[alignment_length] => 156
[identity_percentage] => 37.8
[species] => mbi
[common_name] => Magnolia biondii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[MD00G1076700] => Array
(
[gene_id] => MD00G1076700
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[bit_score] => 78.2
[alignment_length] => 152
[identity_percentage] => 32.9
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[MCO11G436] => Array
(
[gene_id] => MCO11G436
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[bit_score] => 78.2
[alignment_length] => 70
[identity_percentage] => 52.9
[species] => mco
[common_name] => Micromonas commoda
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Nitab4.5_0001402g0110] => Array
(
[gene_id] => Nitab4.5_0001402g0110
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[bit_score] => 78.2
[alignment_length] => 75
[identity_percentage] => 52.0
[species] => nta
[common_name] => Nicotiana tabacum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[Nitab4.5_0005215g0030] => Array
(
[gene_id] => Nitab4.5_0005215g0030
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[bit_score] => 78.2
[alignment_length] => 153
[identity_percentage] => 33.3
[species] => nta
[common_name] => Nicotiana tabacum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[SMO367G0238] => Array
(
[gene_id] => SMO367G0238
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[bit_score] => 78.2
[alignment_length] => 153
[identity_percentage] => 34.6
[species] => smo
[common_name] => Selaginella moellendorffii
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Hund02519] => Array
(
[gene_id] => Hund02519
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[bit_score] => 78.2
[alignment_length] => 152
[identity_percentage] => 32.2
[species] => sun
[common_name] => Selenicereus undatus
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[TAR381G1031] => Array
(
[gene_id] => TAR381G1031
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[bit_score] => 78.2
[alignment_length] => 120
[identity_percentage] => 42.5
[species] => tar
[common_name] => Trochodendron aralioides
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CSS0023121] => Array
(
[gene_id] => CSS0023121
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[bit_score] => 77.8
[alignment_length] => 180
[identity_percentage] => 29.4
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Cc02_g29340] => Array
(
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[bit_score] => 77.8
[alignment_length] => 130
[identity_percentage] => 39.2
[species] => ccan
[common_name] => Coffea canephora
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[FAN18G0482] => Array
(
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[alignment_length] => 156
[identity_percentage] => 32.1
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Os11g0536800] => Array
(
[gene_id] => Os11g0536800
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[alignment_length] => 157
[identity_percentage] => 32.5
[species] => osa
[common_name] => Oryza sativa ssp. japonica
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[SEGI_35733] => Array
(
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[alignment_length] => 152
[identity_percentage] => 40.1
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PSO210G1458] => Array
(
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[alignment_length] => 156
[identity_percentage] => 36.5
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Sed0008875] => Array
(
[gene_id] => Sed0008875
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[bit_score] => 77.4
[alignment_length] => 155
[identity_percentage] => 34.8
[species] => sed
[common_name] => Sechium edule
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[SEGI_26808] => Array
(
[gene_id] => SEGI_26808
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[bit_score] => 77.4
[alignment_length] => 156
[identity_percentage] => 37.8
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[COL.COLO4_17267] => Array
(
[gene_id] => COL.COLO4_17267
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[bit_score] => 77.0
[alignment_length] => 132
[identity_percentage] => 38.6
[species] => col
[common_name] => Corchorus olitorius
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[FvH4_5g09970] => Array
(
[gene_id] => FvH4_5g09970
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[bit_score] => 77.0
[alignment_length] => 154
[identity_percentage] => 33.1
[species] => fve
[common_name] => Fragaria vesca
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Pp3c10_23960] => Array
(
[gene_id] => Pp3c10_23960
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[bit_score] => 77.0
[alignment_length] => 423
[identity_percentage] => 24.3
[species] => ppa
[common_name] => Physcomitrium patens
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D048805
)
)
[GSVIVG01024064001] => Array
(
[gene_id] => GSVIVG01024064001
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[bit_score] => 77.0
[alignment_length] => 119
[identity_percentage] => 41.2
[species] => vvi
[common_name] => Vitis vinifera
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Ca_18012_v3] => Array
(
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[bit_score] => 76.6
[alignment_length] => 156
[identity_percentage] => 37.8
[species] => car
[common_name] => Cicer arietinum L.
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cc00_g05690] => Array
(
[gene_id] => Cc00_g05690
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[bit_score] => 76.6
[alignment_length] => 156
[identity_percentage] => 37.2
[species] => ccan
[common_name] => Coffea canephora
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Lj6g0002626] => Array
(
[gene_id] => Lj6g0002626
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[bit_score] => 76.6
[alignment_length] => 55
[identity_percentage] => 61.8
[species] => lja
[common_name] => Lotus japonicus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[TPR.G26565] => Array
(
[gene_id] => TPR.G26565
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[bit_score] => 76.6
[alignment_length] => 117
[identity_percentage] => 42.7
[species] => tpr
[common_name] => Trifolium pratense
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[TWI75G1237] => Array
(
[gene_id] => TWI75G1237
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[bit_score] => 76.6
[alignment_length] => 165
[identity_percentage] => 37.0
[species] => twi
[common_name] => Tripterygium wilfordii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[TWI75G1622] => Array
(
[gene_id] => TWI75G1622
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[bit_score] => 76.6
[alignment_length] => 168
[identity_percentage] => 36.3
[species] => twi
[common_name] => Tripterygium wilfordii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[arahy.Tifrunner.gnm1.ann1.N2J13H] => Array
(
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[bit_score] => 76.3
[alignment_length] => 156
[identity_percentage] => 36.5
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CARHR004760] => Array
(
[gene_id] => CARHR004760
[e_value] => 6.8e-12
[bit_score] => 76.3
[alignment_length] => 156
[identity_percentage] => 37.2
[species] => chi
[common_name] => Cardamine hirsuta
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[AUR62032200] => Array
(
[gene_id] => AUR62032200
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[bit_score] => 76.3
[alignment_length] => 153
[identity_percentage] => 32.7
[species] => cqu
[common_name] => Chenopodium quinoa
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Dinv04962] => Array
(
[gene_id] => Dinv04962
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[bit_score] => 76.3
[alignment_length] => 156
[identity_percentage] => 36.5
[species] => din
[common_name] => Davidia involucrata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PSO210G2448] => Array
(
[gene_id] => PSO210G2448
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[bit_score] => 76.3
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Prupe.8G161700] => Array
(
[gene_id] => Prupe.8G161700
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[bit_score] => 76.3
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => ppe
[common_name] => Prunus persica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PGR102G2106] => Array
(
[gene_id] => PGR102G2106
[e_value] => 6.8e-12
[bit_score] => 76.3
[alignment_length] => 154
[identity_percentage] => 32.5
[species] => pgr
[common_name] => Punica granatum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[arahy.Tifrunner.gnm1.ann1.P8IJRR] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.P8IJRR
[e_value] => 8.9e-12
[bit_score] => 75.9
[alignment_length] => 160
[identity_percentage] => 35.6
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[BcaC03g18264] => Array
(
[gene_id] => BcaC03g18264
[e_value] => 8.9e-12
[bit_score] => 75.9
[alignment_length] => 253
[identity_percentage] => 27.3
[species] => bca
[common_name] => Brassica carinata
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Carub.0007s0542] => Array
(
[gene_id] => Carub.0007s0542
[e_value] => 8.9e-12
[bit_score] => 75.9
[alignment_length] => 156
[identity_percentage] => 35.3
[species] => cru
[common_name] => Capsella rubella
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[COL.COLO4_17268] => Array
(
[gene_id] => COL.COLO4_17268
[e_value] => 8.9e-12
[bit_score] => 75.9
[alignment_length] => 240
[identity_percentage] => 30.4
[species] => col
[common_name] => Corchorus olitorius
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[DCAR_016328] => Array
(
[gene_id] => DCAR_016328
[e_value] => 8.9e-12
[bit_score] => 75.9
[alignment_length] => 152
[identity_percentage] => 33.6
[species] => dca
[common_name] => Daucus carota
[gf] => Array
(
[HOMFAM] => HOM05D002313
[ORTHOFAM] => ORTHO05D007157
)
)
[Migut.B00113] => Array
(
[gene_id] => Migut.B00113
[e_value] => 8.9e-12
[bit_score] => 75.9
[alignment_length] => 161
[identity_percentage] => 33.5
[species] => egut
[common_name] => Erythranthe guttata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Glyma.08G106000] => Array
(
[gene_id] => Glyma.08G106000
[e_value] => 8.9e-12
[bit_score] => 75.9
[alignment_length] => 157
[identity_percentage] => 36.9
[species] => gma
[common_name] => Glycine max
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[MD10G1120200] => Array
(
[gene_id] => MD10G1120200
[e_value] => 8.9e-12
[bit_score] => 75.9
[alignment_length] => 162
[identity_percentage] => 34.6
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CiPaw.05G078400] => Array
(
[gene_id] => CiPaw.05G078400
[e_value] => 1.2e-11
[bit_score] => 75.5
[alignment_length] => 183
[identity_percentage] => 34.4
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[AUR62010079] => Array
(
[gene_id] => AUR62010079
[e_value] => 1.2e-11
[bit_score] => 75.5
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => cqu
[common_name] => Chenopodium quinoa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[AUR62036969] => Array
(
[gene_id] => AUR62036969
[e_value] => 1.2e-11
[bit_score] => 75.5
[alignment_length] => 153
[identity_percentage] => 32.7
[species] => cqu
[common_name] => Chenopodium quinoa
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Duzib132G1101] => Array
(
[gene_id] => Duzib132G1101
[e_value] => 1.2e-11
[bit_score] => 75.5
[alignment_length] => 156
[identity_percentage] => 37.8
[species] => dzi
[common_name] => Durio zibethinus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Lalb_Chr12g0205951] => Array
(
[gene_id] => Lalb_Chr12g0205951
[e_value] => 1.2e-11
[bit_score] => 75.5
[alignment_length] => 156
[identity_percentage] => 37.2
[species] => lal
[common_name] => Lupinus albus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[TAR381G0102] => Array
(
[gene_id] => TAR381G0102
[e_value] => 1.2e-11
[bit_score] => 75.5
[alignment_length] => 157
[identity_percentage] => 38.2
[species] => tar
[common_name] => Trochodendron aralioides
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Dinv41969] => Array
(
[gene_id] => Dinv41969
[e_value] => 1.5e-11
[bit_score] => 75.1
[alignment_length] => 156
[identity_percentage] => 38.5
[species] => din
[common_name] => Davidia involucrata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[ECA233G0605] => Array
(
[gene_id] => ECA233G0605
[e_value] => 1.5e-11
[bit_score] => 75.1
[alignment_length] => 119
[identity_percentage] => 38.7
[species] => eca
[common_name] => Erigeron canadensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[FAN23G0439] => Array
(
[gene_id] => FAN23G0439
[e_value] => 1.5e-11
[bit_score] => 75.1
[alignment_length] => 131
[identity_percentage] => 39.7
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[MD10G1120300] => Array
(
[gene_id] => MD10G1120300
[e_value] => 1.5e-11
[bit_score] => 75.1
[alignment_length] => 188
[identity_percentage] => 34.0
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PSO108G0001] => Array
(
[gene_id] => PSO108G0001
[e_value] => 1.5e-11
[bit_score] => 75.1
[alignment_length] => 75
[identity_percentage] => 50.7
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[QL11p048406] => Array
(
[gene_id] => QL11p048406
[e_value] => 1.5e-11
[bit_score] => 75.1
[alignment_length] => 156
[identity_percentage] => 37.2
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Rhsim08G0183700] => Array
(
[gene_id] => Rhsim08G0183700
[e_value] => 1.5e-11
[bit_score] => 75.1
[alignment_length] => 188
[identity_percentage] => 34.0
[species] => rsi
[common_name] => Rhododendron simsii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[TPR.G26569] => Array
(
[gene_id] => TPR.G26569
[e_value] => 1.5e-11
[bit_score] => 75.1
[alignment_length] => 184
[identity_percentage] => 36.4
[species] => tpr
[common_name] => Trifolium pratense
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CAN.G439.21] => Array
(
[gene_id] => CAN.G439.21
[e_value] => 2.0e-11
[bit_score] => 74.7
[alignment_length] => 156
[identity_percentage] => 38.5
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cfa025084] => Array
(
[gene_id] => Cfa025084
[e_value] => 2.0e-11
[bit_score] => 74.7
[alignment_length] => 157
[identity_percentage] => 38.2
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[MELO3C020792.2] => Array
(
[gene_id] => MELO3C020792.2
[e_value] => 2.0e-11
[bit_score] => 74.7
[alignment_length] => 157
[identity_percentage] => 36.3
[species] => cme
[common_name] => Cucumis melo
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Gohir.D01G156300] => Array
(
[gene_id] => Gohir.D01G156300
[e_value] => 2.0e-11
[bit_score] => 74.7
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Peaxi162Scf00217g00621] => Array
(
[gene_id] => Peaxi162Scf00217g00621
[e_value] => 2.0e-11
[bit_score] => 74.7
[alignment_length] => 156
[identity_percentage] => 37.8
[species] => pax
[common_name] => Petunia axillaris
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PGSC0003DMG400018706] => Array
(
[gene_id] => PGSC0003DMG400018706
[e_value] => 2.0e-11
[bit_score] => 74.7
[alignment_length] => 156
[identity_percentage] => 37.8
[species] => stu
[common_name] => Solanum tuberosum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[EL10Ac4g09167] => Array
(
[gene_id] => EL10Ac4g09167
[e_value] => 2.6e-11
[bit_score] => 74.3
[alignment_length] => 151
[identity_percentage] => 37.7
[species] => bvu
[common_name] => Beta vulgaris
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[A02p31290] => Array
(
[gene_id] => A02p31290
[e_value] => 2.6e-11
[bit_score] => 74.3
[alignment_length] => 156
[identity_percentage] => 37.8
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CAN.G439.23] => Array
(
[gene_id] => CAN.G439.23
[e_value] => 2.6e-11
[bit_score] => 74.3
[alignment_length] => 119
[identity_percentage] => 41.2
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cfa001628] => Array
(
[gene_id] => Cfa001628
[e_value] => 2.6e-11
[bit_score] => 74.3
[alignment_length] => 157
[identity_percentage] => 33.1
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D017788
)
)
[DCAR_003706] => Array
(
[gene_id] => DCAR_003706
[e_value] => 2.6e-11
[bit_score] => 74.3
[alignment_length] => 165
[identity_percentage] => 35.8
[species] => dca
[common_name] => Daucus carota
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Duzib248G0450] => Array
(
[gene_id] => Duzib248G0450
[e_value] => 2.6e-11
[bit_score] => 74.3
[alignment_length] => 203
[identity_percentage] => 30.0
[species] => dzi
[common_name] => Durio zibethinus
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[SEGI_34389] => Array
(
[gene_id] => SEGI_34389
[e_value] => 2.6e-11
[bit_score] => 74.3
[alignment_length] => 152
[identity_percentage] => 38.2
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[TAR375G0188] => Array
(
[gene_id] => TAR375G0188
[e_value] => 2.6e-11
[bit_score] => 74.3
[alignment_length] => 167
[identity_percentage] => 34.1
[species] => tar
[common_name] => Trochodendron aralioides
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[TAR381G1406] => Array
(
[gene_id] => TAR381G1406
[e_value] => 2.6e-11
[bit_score] => 74.3
[alignment_length] => 90
[identity_percentage] => 47.8
[species] => tar
[common_name] => Trochodendron aralioides
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[TAR628G1148] => Array
(
[gene_id] => TAR628G1148
[e_value] => 2.6e-11
[bit_score] => 74.3
[alignment_length] => 125
[identity_percentage] => 39.2
[species] => tar
[common_name] => Trochodendron aralioides
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cpa.g.sc37.181] => Array
(
[gene_id] => Cpa.g.sc37.181
[e_value] => 3.4e-11
[bit_score] => 73.9
[alignment_length] => 119
[identity_percentage] => 40.3
[species] => cpa
[common_name] => Carica papaya
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[MELO3C013372.2] => Array
(
[gene_id] => MELO3C013372.2
[e_value] => 3.4e-11
[bit_score] => 73.9
[alignment_length] => 119
[identity_percentage] => 41.2
[species] => cme
[common_name] => Cucumis melo
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CsaV3_2G015800] => Array
(
[gene_id] => CsaV3_2G015800
[e_value] => 3.4e-11
[bit_score] => 73.9
[alignment_length] => 169
[identity_percentage] => 36.7
[species] => csa
[common_name] => Cucumis sativus L.
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[MBI09_g15952_MAGBIO] => Array
(
[gene_id] => MBI09_g15952_MAGBIO
[e_value] => 3.4e-11
[bit_score] => 73.9
[alignment_length] => 113
[identity_percentage] => 44.2
[species] => mbi
[common_name] => Magnolia biondii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Oeu036712.1] => Array
(
[gene_id] => Oeu036712.1
[e_value] => 3.4e-11
[bit_score] => 73.9
[alignment_length] => 144
[identity_percentage] => 33.3
[species] => oeu
[common_name] => Olea europaea
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[QL11p047888] => Array
(
[gene_id] => QL11p047888
[e_value] => 3.4e-11
[bit_score] => 73.9
[alignment_length] => 156
[identity_percentage] => 36.5
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[SalBow6G5025] => Array
(
[gene_id] => SalBow6G5025
[e_value] => 3.4e-11
[bit_score] => 73.9
[alignment_length] => 153
[identity_percentage] => 35.9
[species] => sbo
[common_name] => Salvia bowleyana
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[SEGI_28744] => Array
(
[gene_id] => SEGI_28744
[e_value] => 3.4e-11
[bit_score] => 73.9
[alignment_length] => 151
[identity_percentage] => 37.7
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Solyc01g111220.3] => Array
(
[gene_id] => Solyc01g111220.3
[e_value] => 3.4e-11
[bit_score] => 73.9
[alignment_length] => 119
[identity_percentage] => 40.3
[species] => sly
[common_name] => Solanum lycopersicum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Sopen01g053280] => Array
(
[gene_id] => Sopen01g053280
[e_value] => 3.4e-11
[bit_score] => 73.9
[alignment_length] => 119
[identity_percentage] => 40.3
[species] => spe
[common_name] => Solanum pennellii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[GSVIVG01024068001] => Array
(
[gene_id] => GSVIVG01024068001
[e_value] => 3.4e-11
[bit_score] => 73.9
[alignment_length] => 125
[identity_percentage] => 43.2
[species] => vvi
[common_name] => Vitis vinifera
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[EL10Ac9g21426] => Array
(
[gene_id] => EL10Ac9g21426
[e_value] => 4.4e-11
[bit_score] => 73.6
[alignment_length] => 157
[identity_percentage] => 36.9
[species] => bvu
[common_name] => Beta vulgaris
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[BraA02t08133Z] => Array
(
[gene_id] => BraA02t08133Z
[e_value] => 4.4e-11
[bit_score] => 73.6
[alignment_length] => 156
[identity_percentage] => 37.8
[species] => bra
[common_name] => Brassica rapa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[ClCG02G004260] => Array
(
[gene_id] => ClCG02G004260
[e_value] => 4.4e-11
[bit_score] => 73.6
[alignment_length] => 156
[identity_percentage] => 37.2
[species] => cla
[common_name] => Citrullus lanatus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[DCAR_003708] => Array
(
[gene_id] => DCAR_003708
[e_value] => 4.4e-11
[bit_score] => 73.6
[alignment_length] => 161
[identity_percentage] => 35.4
[species] => dca
[common_name] => Daucus carota
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[HanXRQChr15g0472011] => Array
(
[gene_id] => HanXRQChr15g0472011
[e_value] => 4.4e-11
[bit_score] => 73.6
[alignment_length] => 156
[identity_percentage] => 37.2
[species] => han
[common_name] => Helianthus annuus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Pp3c17_7850] => Array
(
[gene_id] => Pp3c17_7850
[e_value] => 4.4e-11
[bit_score] => 73.6
[alignment_length] => 155
[identity_percentage] => 33.5
[species] => ppa
[common_name] => Physcomitrium patens
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Potri.004G171300] => Array
(
[gene_id] => Potri.004G171300
[e_value] => 4.4e-11
[bit_score] => 73.6
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => ptr
[common_name] => Populus trichocarpa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[RcHm_v2.0_Chr6g0244621] => Array
(
[gene_id] => RcHm_v2.0_Chr6g0244621
[e_value] => 4.4e-11
[bit_score] => 73.6
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => rch
[common_name] => Rosa chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[RcHm_v2.0_Chr6g0244721] => Array
(
[gene_id] => RcHm_v2.0_Chr6g0244721
[e_value] => 4.4e-11
[bit_score] => 73.6
[alignment_length] => 181
[identity_percentage] => 35.4
[species] => rch
[common_name] => Rosa chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[SMO134G0263] => Array
(
[gene_id] => SMO134G0263
[e_value] => 4.4e-11
[bit_score] => 73.6
[alignment_length] => 156
[identity_percentage] => 36.5
[species] => smo
[common_name] => Selaginella moellendorffii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Thecc.02G066100] => Array
(
[gene_id] => Thecc.02G066100
[e_value] => 4.4e-11
[bit_score] => 73.6
[alignment_length] => 119
[identity_percentage] => 40.3
[species] => tca
[common_name] => Theobroma cacao
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CANSAT25G0507] => Array
(
[gene_id] => CANSAT25G0507
[e_value] => 5.8e-11
[bit_score] => 73.2
[alignment_length] => 157
[identity_percentage] => 35.0
[species] => cansat
[common_name] => Cannabis sativa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CAN.G439.25] => Array
(
[gene_id] => CAN.G439.25
[e_value] => 5.8e-11
[bit_score] => 73.2
[alignment_length] => 156
[identity_percentage] => 37.2
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Haze_02187] => Array
(
[gene_id] => Haze_02187
[e_value] => 5.8e-11
[bit_score] => 73.2
[alignment_length] => 163
[identity_percentage] => 35.6
[species] => cav
[common_name] => Corylus avellana
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[ECA246G1973] => Array
(
[gene_id] => ECA246G1973
[e_value] => 5.8e-11
[bit_score] => 73.2
[alignment_length] => 163
[identity_percentage] => 35.0
[species] => eca
[common_name] => Erigeron canadensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[FAN27G1777] => Array
(
[gene_id] => FAN27G1777
[e_value] => 5.8e-11
[bit_score] => 73.2
[alignment_length] => 180
[identity_percentage] => 35.6
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Lsat_1_v5_gn_3_45801] => Array
(
[gene_id] => Lsat_1_v5_gn_3_45801
[e_value] => 5.8e-11
[bit_score] => 73.2
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => lsa
[common_name] => Lactuca sativa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Lj4g0007390] => Array
(
[gene_id] => Lj4g0007390
[e_value] => 5.8e-11
[bit_score] => 73.2
[alignment_length] => 156
[identity_percentage] => 37.2
[species] => lja
[common_name] => Lotus japonicus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Manes.11G091532] => Array
(
[gene_id] => Manes.11G091532
[e_value] => 5.8e-11
[bit_score] => 73.2
[alignment_length] => 156
[identity_percentage] => 37.2
[species] => mes
[common_name] => Manihot esculenta
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Potri.009G130700] => Array
(
[gene_id] => Potri.009G130700
[e_value] => 5.8e-11
[bit_score] => 73.2
[alignment_length] => 180
[identity_percentage] => 35.6
[species] => ptr
[common_name] => Populus trichocarpa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[TPR.G11956] => Array
(
[gene_id] => TPR.G11956
[e_value] => 5.8e-11
[bit_score] => 73.2
[alignment_length] => 156
[identity_percentage] => 37.2
[species] => tpr
[common_name] => Trifolium pratense
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cfa005202] => Array
(
[gene_id] => Cfa005202
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 163
[identity_percentage] => 35.0
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cre02.g114850] => Array
(
[gene_id] => Cre02.g114850
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 237
[identity_percentage] => 26.6
[species] => cre
[common_name] => Chlamydomonas reinhardtii
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D005342
)
)
[Cc02_g14740] => Array
(
[gene_id] => Cc02_g14740
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 120
[identity_percentage] => 40.0
[species] => ccan
[common_name] => Coffea canephora
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cc02_g16440] => Array
(
[gene_id] => Cc02_g16440
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 164
[identity_percentage] => 36.0
[species] => ccan
[common_name] => Coffea canephora
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CsaV3_2G015820] => Array
(
[gene_id] => CsaV3_2G015820
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 169
[identity_percentage] => 36.7
[species] => csa
[common_name] => Cucumis sativus L.
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CsaV3_7G000850] => Array
(
[gene_id] => CsaV3_7G000850
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 119
[identity_percentage] => 40.3
[species] => csa
[common_name] => Cucumis sativus L.
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[FAN15G3245] => Array
(
[gene_id] => FAN15G3245
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 180
[identity_percentage] => 35.0
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[FAN19G1240] => Array
(
[gene_id] => FAN19G1240
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 122
[identity_percentage] => 39.3
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[FAN20G2903] => Array
(
[gene_id] => FAN20G2903
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 115
[identity_percentage] => 40.9
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Gorai.002G193900] => Array
(
[gene_id] => Gorai.002G193900
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 119
[identity_percentage] => 38.7
[species] => gra
[common_name] => Gossypium raimondii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[HanXRQChr15g0472021] => Array
(
[gene_id] => HanXRQChr15g0472021
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 156
[identity_percentage] => 37.2
[species] => han
[common_name] => Helianthus annuus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Lsat_1_v5_gn_3_45840] => Array
(
[gene_id] => Lsat_1_v5_gn_3_45840
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => lsa
[common_name] => Lactuca sativa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Lj3g0011878] => Array
(
[gene_id] => Lj3g0011878
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 157
[identity_percentage] => 35.7
[species] => lja
[common_name] => Lotus japonicus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Medtr8g097220] => Array
(
[gene_id] => Medtr8g097220
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 156
[identity_percentage] => 36.5
[species] => mtr
[common_name] => Medicago truncatula
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Psat7g075560] => Array
(
[gene_id] => Psat7g075560
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 156
[identity_percentage] => 37.2
[species] => psa
[common_name] => Pisum sativum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Potri.009G130500] => Array
(
[gene_id] => Potri.009G130500
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 169
[identity_percentage] => 34.3
[species] => ptr
[common_name] => Populus trichocarpa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Thecc.02G065900] => Array
(
[gene_id] => Thecc.02G065900
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 119
[identity_percentage] => 40.3
[species] => tca
[common_name] => Theobroma cacao
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[TPR.G26564] => Array
(
[gene_id] => TPR.G26564
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 184
[identity_percentage] => 35.3
[species] => tpr
[common_name] => Trifolium pratense
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[TWI75G0690] => Array
(
[gene_id] => TWI75G0690
[e_value] => 7.5e-11
[bit_score] => 72.8
[alignment_length] => 157
[identity_percentage] => 34.4
[species] => twi
[common_name] => Tripterygium wilfordii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Ah.04g162350] => Array
(
[gene_id] => Ah.04g162350
[e_value] => 9.8e-11
[bit_score] => 72.4
[alignment_length] => 156
[identity_percentage] => 35.3
[species] => amhyb
[common_name] => Amaranthus hybridus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Eucgr.I01380] => Array
(
[gene_id] => Eucgr.I01380
[e_value] => 9.8e-11
[bit_score] => 72.4
[alignment_length] => 155
[identity_percentage] => 34.2
[species] => egr
[common_name] => Eucalyptus grandis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Eucgr.I01383] => Array
(
[gene_id] => Eucgr.I01383
[e_value] => 9.8e-11
[bit_score] => 72.4
[alignment_length] => 156
[identity_percentage] => 36.5
[species] => egr
[common_name] => Eucalyptus grandis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Eucgr.L03443] => Array
(
[gene_id] => Eucgr.L03443
[e_value] => 9.8e-11
[bit_score] => 72.4
[alignment_length] => 155
[identity_percentage] => 34.2
[species] => egr
[common_name] => Eucalyptus grandis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Manes.11G091058] => Array
(
[gene_id] => Manes.11G091058
[e_value] => 9.8e-11
[bit_score] => 72.4
[alignment_length] => 156
[identity_percentage] => 36.5
[species] => mes
[common_name] => Manihot esculenta
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Medtr8g080870] => Array
(
[gene_id] => Medtr8g080870
[e_value] => 9.8e-11
[bit_score] => 72.4
[alignment_length] => 156
[identity_percentage] => 38.5
[species] => mtr
[common_name] => Medicago truncatula
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Phvul.L003946] => Array
(
[gene_id] => Phvul.L003946
[e_value] => 9.8e-11
[bit_score] => 72.4
[alignment_length] => 184
[identity_percentage] => 35.3
[species] => pvu
[common_name] => Phaseolus vulgaris
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PGR042G2671] => Array
(
[gene_id] => PGR042G2671
[e_value] => 9.8e-11
[bit_score] => 72.4
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => pgr
[common_name] => Punica granatum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PGR142G1342] => Array
(
[gene_id] => PGR142G1342
[e_value] => 9.8e-11
[bit_score] => 72.4
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => pgr
[common_name] => Punica granatum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[SMO271G0054] => Array
(
[gene_id] => SMO271G0054
[e_value] => 9.8e-11
[bit_score] => 72.4
[alignment_length] => 174
[identity_percentage] => 33.9
[species] => smo
[common_name] => Selaginella moellendorffii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[arahy.Tifrunner.gnm1.ann1.K2FSVA] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.K2FSVA
[e_value] => 1.3e-10
[bit_score] => 72.0
[alignment_length] => 157
[identity_percentage] => 35.0
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[arahy.Tifrunner.gnm1.ann1.NWD6TW] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.NWD6TW
[e_value] => 1.3e-10
[bit_score] => 72.0
[alignment_length] => 212
[identity_percentage] => 29.2
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[AUR62013073] => Array
(
[gene_id] => AUR62013073
[e_value] => 1.3e-10
[bit_score] => 72.0
[alignment_length] => 156
[identity_percentage] => 35.3
[species] => cqu
[common_name] => Chenopodium quinoa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[MELO3C020793.2] => Array
(
[gene_id] => MELO3C020793.2
[e_value] => 1.3e-10
[bit_score] => 72.0
[alignment_length] => 169
[identity_percentage] => 36.1
[species] => cme
[common_name] => Cucumis melo
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CsaV3_2G015790] => Array
(
[gene_id] => CsaV3_2G015790
[e_value] => 1.3e-10
[bit_score] => 72.0
[alignment_length] => 157
[identity_percentage] => 35.7
[species] => csa
[common_name] => Cucumis sativus L.
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Dinv42666] => Array
(
[gene_id] => Dinv42666
[e_value] => 1.3e-10
[bit_score] => 72.0
[alignment_length] => 154
[identity_percentage] => 35.7
[species] => din
[common_name] => Davidia involucrata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[FAN15G0808] => Array
(
[gene_id] => FAN15G0808
[e_value] => 1.3e-10
[bit_score] => 72.0
[alignment_length] => 156
[identity_percentage] => 35.3
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Manes.04G077700] => Array
(
[gene_id] => Manes.04G077700
[e_value] => 1.3e-10
[bit_score] => 72.0
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => mes
[common_name] => Manihot esculenta
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Potri.004G171000] => Array
(
[gene_id] => Potri.004G171000
[e_value] => 1.3e-10
[bit_score] => 72.0
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => ptr
[common_name] => Populus trichocarpa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[QL11p048011] => Array
(
[gene_id] => QL11p048011
[e_value] => 1.3e-10
[bit_score] => 72.0
[alignment_length] => 158
[identity_percentage] => 37.3
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Atru.chr5.3248] => Array
(
[gene_id] => Atru.chr5.3248
[e_value] => 1.7e-10
[bit_score] => 71.6
[alignment_length] => 152
[identity_percentage] => 37.5
[species] => acertr
[common_name] => Acer truncatum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Ciclev10028187m.g] => Array
(
[gene_id] => Ciclev10028187m.g
[e_value] => 1.7e-10
[bit_score] => 71.6
[alignment_length] => 158
[identity_percentage] => 35.4
[species] => ccl
[common_name] => Citrus clementina
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Ciclev10030294m.g] => Array
(
[gene_id] => Ciclev10030294m.g
[e_value] => 1.7e-10
[bit_score] => 71.6
[alignment_length] => 121
[identity_percentage] => 38.8
[species] => ccl
[common_name] => Citrus clementina
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[FvH4_2g01722] => Array
(
[gene_id] => FvH4_2g01722
[e_value] => 1.7e-10
[bit_score] => 71.6
[alignment_length] => 179
[identity_percentage] => 35.2
[species] => fve
[common_name] => Fragaria vesca
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Nn1g05916] => Array
(
[gene_id] => Nn1g05916
[e_value] => 1.7e-10
[bit_score] => 71.6
[alignment_length] => 171
[identity_percentage] => 35.1
[species] => nnu
[common_name] => Nelumbo nucifera
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PSO675G3189] => Array
(
[gene_id] => PSO675G3189
[e_value] => 1.7e-10
[bit_score] => 71.6
[alignment_length] => 166
[identity_percentage] => 36.1
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Prupe.8G161600] => Array
(
[gene_id] => Prupe.8G161600
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[bit_score] => 71.6
[alignment_length] => 156
[identity_percentage] => 34.0
[species] => ppe
[common_name] => Prunus persica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[RcHm_v2.0_Chr6g0244611] => Array
(
[gene_id] => RcHm_v2.0_Chr6g0244611
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[bit_score] => 71.6
[alignment_length] => 117
[identity_percentage] => 41.0
[species] => rch
[common_name] => Rosa chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[RcHm_v2.0_Chr6g0244741] => Array
(
[gene_id] => RcHm_v2.0_Chr6g0244741
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[bit_score] => 71.6
[alignment_length] => 180
[identity_percentage] => 35.0
[species] => rch
[common_name] => Rosa chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Sabra04G0113900] => Array
(
[gene_id] => Sabra04G0113900
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[bit_score] => 71.6
[alignment_length] => 156
[identity_percentage] => 35.3
[species] => sbr
[common_name] => Salix brachista
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[SEGI_03091] => Array
(
[gene_id] => SEGI_03091
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[bit_score] => 71.6
[alignment_length] => 154
[identity_percentage] => 37.7
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[arahy.Tifrunner.gnm1.ann1.Y5AKFB] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.Y5AKFB
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[bit_score] => 71.2
[alignment_length] => 163
[identity_percentage] => 36.2
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[FAN24G2437] => Array
(
[gene_id] => FAN24G2437
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[bit_score] => 71.2
[alignment_length] => 176
[identity_percentage] => 35.2
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Manes.14G043000] => Array
(
[gene_id] => Manes.14G043000
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[bit_score] => 71.2
[alignment_length] => 137
[identity_percentage] => 35.0
[species] => mes
[common_name] => Manihot esculenta
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Os04g0184100] => Array
(
[gene_id] => Os04g0184100
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[bit_score] => 71.2
[alignment_length] => 155
[identity_percentage] => 36.8
[species] => osa
[common_name] => Oryza sativa ssp. japonica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Peaxi162Scf00207g00211] => Array
(
[gene_id] => Peaxi162Scf00207g00211
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[bit_score] => 71.2
[alignment_length] => 160
[identity_percentage] => 32.5
[species] => pax
[common_name] => Petunia axillaris
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Peaxi162Scf00362g00957] => Array
(
[gene_id] => Peaxi162Scf00362g00957
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[bit_score] => 71.2
[alignment_length] => 122
[identity_percentage] => 40.2
[species] => pax
[common_name] => Petunia axillaris
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Pp3c4_17250] => Array
(
[gene_id] => Pp3c4_17250
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[bit_score] => 71.2
[alignment_length] => 153
[identity_percentage] => 35.3
[species] => ppa
[common_name] => Physcomitrium patens
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Sabra09G0101000] => Array
(
[gene_id] => Sabra09G0101000
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[bit_score] => 71.2
[alignment_length] => 169
[identity_percentage] => 33.7
[species] => sbr
[common_name] => Salix brachista
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Solyc11g071550.2] => Array
(
[gene_id] => Solyc11g071550.2
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[bit_score] => 71.2
[alignment_length] => 163
[identity_percentage] => 36.2
[species] => sly
[common_name] => Solanum lycopersicum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Sopen11g029240] => Array
(
[gene_id] => Sopen11g029240
[e_value] => 2.2e-10
[bit_score] => 71.2
[alignment_length] => 163
[identity_percentage] => 36.2
[species] => spe
[common_name] => Solanum pennellii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[SGA_v2.0_scaffold58G20423] => Array
(
[gene_id] => SGA_v2.0_scaffold58G20423
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[bit_score] => 71.2
[alignment_length] => 157
[identity_percentage] => 36.9
[species] => sas
[common_name] => Striga asiatica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[HPP92_025555] => Array
(
[gene_id] => HPP92_025555
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[bit_score] => 71.2
[alignment_length] => 161
[identity_percentage] => 36.6
[species] => vpl
[common_name] => Vanilla planifolia
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[AL7G16330] => Array
(
[gene_id] => AL7G16330
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[bit_score] => 70.9
[alignment_length] => 156
[identity_percentage] => 36.5
[species] => aly
[common_name] => Arabidopsis lyrata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[AUR62000988] => Array
(
[gene_id] => AUR62000988
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[bit_score] => 70.9
[alignment_length] => 156
[identity_percentage] => 36.5
[species] => cqu
[common_name] => Chenopodium quinoa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[FvH4_2g01720] => Array
(
[gene_id] => FvH4_2g01720
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[bit_score] => 70.9
[alignment_length] => 117
[identity_percentage] => 39.3
[species] => fve
[common_name] => Fragaria vesca
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Medtr8g080840] => Array
(
[gene_id] => Medtr8g080840
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[bit_score] => 70.9
[alignment_length] => 119
[identity_percentage] => 39.5
[species] => mtr
[common_name] => Medicago truncatula
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Medtr8g080890] => Array
(
[gene_id] => Medtr8g080890
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[bit_score] => 70.9
[alignment_length] => 156
[identity_percentage] => 36.5
[species] => mtr
[common_name] => Medicago truncatula
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[QL11p047962] => Array
(
[gene_id] => QL11p047962
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[bit_score] => 70.9
[alignment_length] => 157
[identity_percentage] => 34.4
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[arahy.Tifrunner.gnm1.ann1.R6RTRV] => Array
(
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[bit_score] => 70.5
[alignment_length] => 170
[identity_percentage] => 32.9
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[BcaC03g16959] => Array
(
[gene_id] => BcaC03g16959
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[bit_score] => 70.5
[alignment_length] => 155
[identity_percentage] => 38.1
[species] => bca
[common_name] => Brassica carinata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[C02p48660] => Array
(
[gene_id] => C02p48660
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[bit_score] => 70.5
[alignment_length] => 155
[identity_percentage] => 38.1
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[BolC2t10958H] => Array
(
[gene_id] => BolC2t10958H
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[bit_score] => 70.5
[alignment_length] => 155
[identity_percentage] => 38.1
[species] => bol
[common_name] => Brassica oleracea
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CAN.G2368.1] => Array
(
[gene_id] => CAN.G2368.1
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[bit_score] => 70.5
[alignment_length] => 109
[identity_percentage] => 40.4
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Cfa005201] => Array
(
[gene_id] => Cfa005201
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[bit_score] => 70.5
[alignment_length] => 157
[identity_percentage] => 34.4
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cfa022689] => Array
(
[gene_id] => Cfa022689
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[bit_score] => 70.5
[alignment_length] => 140
[identity_percentage] => 31.4
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D017788
)
)
[Eucgr.G01763] => Array
(
[gene_id] => Eucgr.G01763
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[bit_score] => 70.5
[alignment_length] => 125
[identity_percentage] => 36.0
[species] => egr
[common_name] => Eucalyptus grandis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Lsat_1_v5_gn_8_126020] => Array
(
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[bit_score] => 70.5
[alignment_length] => 119
[identity_percentage] => 36.1
[species] => lsa
[common_name] => Lactuca sativa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PGR142G3522] => Array
(
[gene_id] => PGR142G3522
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[bit_score] => 70.5
[alignment_length] => 157
[identity_percentage] => 36.3
[species] => pgr
[common_name] => Punica granatum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[SEGI_29159] => Array
(
[gene_id] => SEGI_29159
[e_value] => 3.7e-10
[bit_score] => 70.5
[alignment_length] => 152
[identity_percentage] => 36.8
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[MSTRG.16887] => Array
(
[gene_id] => MSTRG.16887
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[bit_score] => 70.1
[alignment_length] => 111
[identity_percentage] => 38.7
[species] => ama
[common_name] => Avicennia marina
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Ca_19038_v3] => Array
(
[gene_id] => Ca_19038_v3
[e_value] => 4.9e-10
[bit_score] => 70.1
[alignment_length] => 159
[identity_percentage] => 34.0
[species] => car
[common_name] => Cicer arietinum L.
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Dinv04961] => Array
(
[gene_id] => Dinv04961
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[bit_score] => 70.1
[alignment_length] => 111
[identity_percentage] => 38.7
[species] => din
[common_name] => Davidia involucrata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[FvH4_2g01710] => Array
(
[gene_id] => FvH4_2g01710
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[bit_score] => 70.1
[alignment_length] => 118
[identity_percentage] => 39.8
[species] => fve
[common_name] => Fragaria vesca
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PSO210G5656] => Array
(
[gene_id] => PSO210G5656
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[bit_score] => 70.1
[alignment_length] => 152
[identity_percentage] => 36.2
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Potri.004G169300] => Array
(
[gene_id] => Potri.004G169300
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[bit_score] => 70.1
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => ptr
[common_name] => Populus trichocarpa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Prupe.8G161900] => Array
(
[gene_id] => Prupe.8G161900
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[bit_score] => 70.1
[alignment_length] => 119
[identity_percentage] => 38.7
[species] => ppe
[common_name] => Prunus persica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[QL11p047895] => Array
(
[gene_id] => QL11p047895
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[bit_score] => 70.1
[alignment_length] => 157
[identity_percentage] => 36.3
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[QL11p047901] => Array
(
[gene_id] => QL11p047901
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[bit_score] => 70.1
[alignment_length] => 157
[identity_percentage] => 33.8
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Rhsim11G0189200] => Array
(
[gene_id] => Rhsim11G0189200
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[bit_score] => 70.1
[alignment_length] => 127
[identity_percentage] => 37.8
[species] => rsi
[common_name] => Rhododendron simsii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Aa31LG2G15660] => Array
(
[gene_id] => Aa31LG2G15660
[e_value] => 6.4e-10
[bit_score] => 69.7
[alignment_length] => 156
[identity_percentage] => 35.3
[species] => aar
[common_name] => Aethionema arabicum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CSS0035205] => Array
(
[gene_id] => CSS0035205
[e_value] => 6.4e-10
[bit_score] => 69.7
[alignment_length] => 158
[identity_percentage] => 35.4
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[AUR62000989] => Array
(
[gene_id] => AUR62000989
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[bit_score] => 69.7
[alignment_length] => 156
[identity_percentage] => 36.5
[species] => cqu
[common_name] => Chenopodium quinoa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[AUR62004971] => Array
(
[gene_id] => AUR62004971
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[bit_score] => 69.7
[alignment_length] => 155
[identity_percentage] => 36.1
[species] => cqu
[common_name] => Chenopodium quinoa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Ciclev10028286m.g] => Array
(
[gene_id] => Ciclev10028286m.g
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[bit_score] => 69.7
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => ccl
[common_name] => Citrus clementina
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Nitab4.5_0000283g0050] => Array
(
[gene_id] => Nitab4.5_0000283g0050
[e_value] => 6.4e-10
[bit_score] => 69.7
[alignment_length] => 114
[identity_percentage] => 38.6
[species] => nta
[common_name] => Nicotiana tabacum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PSO135G0202] => Array
(
[gene_id] => PSO135G0202
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[bit_score] => 69.7
[alignment_length] => 157
[identity_percentage] => 35.0
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PSO210G7078] => Array
(
[gene_id] => PSO210G7078
[e_value] => 6.4e-10
[bit_score] => 69.7
[alignment_length] => 152
[identity_percentage] => 36.2
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[AT4G34880] => Array
(
[gene_id] => AT4G34880
[e_value] => 8.3e-10
[bit_score] => 69.3
[alignment_length] => 156
[identity_percentage] => 36.5
[species] => ath
[common_name] => Arabidopsis thaliana
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[arahy.Tifrunner.gnm1.ann1.GXD1I8] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.GXD1I8
[e_value] => 8.3e-10
[bit_score] => 69.3
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001781
)
)
[arahy.Tifrunner.gnm1.ann1.X4TLRY] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.X4TLRY
[e_value] => 8.3e-10
[bit_score] => 69.3
[alignment_length] => 119
[identity_percentage] => 39.5
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001375
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)
)
[CiPaw.05G078100] => Array
(
[gene_id] => CiPaw.05G078100
[e_value] => 8.3e-10
[bit_score] => 69.3
[alignment_length] => 158
[identity_percentage] => 35.4
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[COL.COLO4_17269] => Array
(
[gene_id] => COL.COLO4_17269
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[bit_score] => 69.3
[alignment_length] => 125
[identity_percentage] => 37.6
[species] => col
[common_name] => Corchorus olitorius
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Lj5A183G94] => Array
(
[gene_id] => Lj5A183G94
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[bit_score] => 69.3
[alignment_length] => 120
[identity_percentage] => 39.2
[species] => lonja
[common_name] => Lonicera japonica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Lj5A183T92] => Array
(
[gene_id] => Lj5A183T92
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[bit_score] => 69.3
[alignment_length] => 113
[identity_percentage] => 40.7
[species] => lonja
[common_name] => Lonicera japonica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[MD05G1117200] => Array
(
[gene_id] => MD05G1117200
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[bit_score] => 69.3
[alignment_length] => 117
[identity_percentage] => 39.3
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Medtr8g080880] => Array
(
[gene_id] => Medtr8g080880
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[bit_score] => 69.3
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => mtr
[common_name] => Medicago truncatula
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[QL11p048119] => Array
(
[gene_id] => QL11p048119
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[bit_score] => 69.3
[alignment_length] => 117
[identity_percentage] => 42.7
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Rhsim05G0062500] => Array
(
[gene_id] => Rhsim05G0062500
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[bit_score] => 69.3
[alignment_length] => 156
[identity_percentage] => 34.6
[species] => rsi
[common_name] => Rhododendron simsii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Rhsim05G0062700] => Array
(
[gene_id] => Rhsim05G0062700
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[bit_score] => 69.3
[alignment_length] => 161
[identity_percentage] => 34.2
[species] => rsi
[common_name] => Rhododendron simsii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Ciclev10028203m.g] => Array
(
[gene_id] => Ciclev10028203m.g
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[bit_score] => 68.9
[alignment_length] => 156
[identity_percentage] => 34.6
[species] => ccl
[common_name] => Citrus clementina
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Eucgr.I01388] => Array
(
[gene_id] => Eucgr.I01388
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[bit_score] => 68.9
[alignment_length] => 156
[identity_percentage] => 34.6
[species] => egr
[common_name] => Eucalyptus grandis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Eucgr.I01389] => Array
(
[gene_id] => Eucgr.I01389
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[bit_score] => 68.9
[alignment_length] => 119
[identity_percentage] => 38.7
[species] => egr
[common_name] => Eucalyptus grandis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Glyma.05G149500] => Array
(
[gene_id] => Glyma.05G149500
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[bit_score] => 68.9
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => gma
[common_name] => Glycine max
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Hma1.2p1_0023F.1_g015520] => Array
(
[gene_id] => Hma1.2p1_0023F.1_g015520
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[bit_score] => 68.9
[alignment_length] => 117
[identity_percentage] => 39.3
[species] => hma
[common_name] => Hydrangea macrophylla
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Lj3g0000984] => Array
(
[gene_id] => Lj3g0000984
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[bit_score] => 68.9
[alignment_length] => 157
[identity_percentage] => 33.8
[species] => lja
[common_name] => Lotus japonicus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Potri.009G130400] => Array
(
[gene_id] => Potri.009G130400
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[bit_score] => 68.9
[alignment_length] => 129
[identity_percentage] => 38.0
[species] => ptr
[common_name] => Populus trichocarpa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[SalBow6G2456] => Array
(
[gene_id] => SalBow6G2456
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[bit_score] => 68.9
[alignment_length] => 155
[identity_percentage] => 34.8
[species] => sbo
[common_name] => Salvia bowleyana
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[THA.LOC104804337] => Array
(
[gene_id] => THA.LOC104804337
[e_value] => 1.1e-09
[bit_score] => 68.9
[alignment_length] => 156
[identity_percentage] => 36.5
[species] => tha
[common_name] => Tarenaya hassleriana
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[HPP92_004989] => Array
(
[gene_id] => HPP92_004989
[e_value] => 1.1e-09
[bit_score] => 68.9
[alignment_length] => 174
[identity_percentage] => 30.5
[species] => vpl
[common_name] => Vanilla planifolia
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Ah.06g192540] => Array
(
[gene_id] => Ah.06g192540
[e_value] => 1.4e-09
[bit_score] => 68.6
[alignment_length] => 156
[identity_percentage] => 34.6
[species] => amhyb
[common_name] => Amaranthus hybridus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CiPaw.05G078200] => Array
(
[gene_id] => CiPaw.05G078200
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[bit_score] => 68.6
[alignment_length] => 183
[identity_percentage] => 33.3
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Glyma.08G197900] => Array
(
[gene_id] => Glyma.08G197900
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[bit_score] => 68.6
[alignment_length] => 84
[identity_percentage] => 42.9
[species] => gma
[common_name] => Glycine max
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D046685
)
)
[Nitab4.5_0000980g0060] => Array
(
[gene_id] => Nitab4.5_0000980g0060
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[bit_score] => 68.6
[alignment_length] => 158
[identity_percentage] => 33.5
[species] => nta
[common_name] => Nicotiana tabacum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Os06g0271300] => Array
(
[gene_id] => Os06g0271300
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[bit_score] => 68.6
[alignment_length] => 125
[identity_percentage] => 36.0
[species] => osa
[common_name] => Oryza sativa ssp. japonica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PSO724G0677] => Array
(
[gene_id] => PSO724G0677
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[bit_score] => 68.6
[alignment_length] => 164
[identity_percentage] => 35.4
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Sed0027530] => Array
(
[gene_id] => Sed0027530
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[bit_score] => 68.6
[alignment_length] => 127
[identity_percentage] => 37.0
[species] => sed
[common_name] => Sechium edule
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cc00_g05670] => Array
(
[gene_id] => Cc00_g05670
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[bit_score] => 68.2
[alignment_length] => 119
[identity_percentage] => 37.8
[species] => ccan
[common_name] => Coffea canephora
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Eucgr.I02568] => Array
(
[gene_id] => Eucgr.I02568
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[bit_score] => 68.2
[alignment_length] => 172
[identity_percentage] => 28.5
[species] => egr
[common_name] => Eucalyptus grandis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[MD10G1120400] => Array
(
[gene_id] => MD10G1120400
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[bit_score] => 68.2
[alignment_length] => 156
[identity_percentage] => 34.6
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Oeu060422.1] => Array
(
[gene_id] => Oeu060422.1
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[bit_score] => 68.2
[alignment_length] => 152
[identity_percentage] => 32.9
[species] => oeu
[common_name] => Olea europaea
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Psat7g174400] => Array
(
[gene_id] => Psat7g174400
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[bit_score] => 68.2
[alignment_length] => 157
[identity_percentage] => 35.0
[species] => psa
[common_name] => Pisum sativum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[QL11p047952] => Array
(
[gene_id] => QL11p047952
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[bit_score] => 68.2
[alignment_length] => 189
[identity_percentage] => 34.4
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[QL11p048093] => Array
(
[gene_id] => QL11p048093
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[bit_score] => 68.2
[alignment_length] => 172
[identity_percentage] => 33.1
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[SEGI_28756] => Array
(
[gene_id] => SEGI_28756
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[bit_score] => 68.2
[alignment_length] => 152
[identity_percentage] => 36.8
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Solyc01g111210.3] => Array
(
[gene_id] => Solyc01g111210.3
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[bit_score] => 68.2
[alignment_length] => 158
[identity_percentage] => 34.2
[species] => sly
[common_name] => Solanum lycopersicum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Sopen01g053270] => Array
(
[gene_id] => Sopen01g053270
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[bit_score] => 68.2
[alignment_length] => 158
[identity_percentage] => 34.2
[species] => spe
[common_name] => Solanum pennellii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[SGA_v2.0_scaffold58G20422] => Array
(
[gene_id] => SGA_v2.0_scaffold58G20422
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[bit_score] => 68.2
[alignment_length] => 158
[identity_percentage] => 32.9
[species] => sas
[common_name] => Striga asiatica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Thecc.05G242200] => Array
(
[gene_id] => Thecc.05G242200
[e_value] => 1.9e-09
[bit_score] => 68.2
[alignment_length] => 119
[identity_percentage] => 38.7
[species] => tca
[common_name] => Theobroma cacao
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[vmacro02256] => Array
(
[gene_id] => vmacro02256
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[bit_score] => 68.2
[alignment_length] => 135
[identity_percentage] => 35.6
[species] => vma
[common_name] => Vaccinium macrocarpon
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Actinidia00601] => Array
(
[gene_id] => Actinidia00601
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[bit_score] => 67.8
[alignment_length] => 116
[identity_percentage] => 36.2
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Actinidia18282] => Array
(
[gene_id] => Actinidia18282
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[bit_score] => 67.8
[alignment_length] => 106
[identity_percentage] => 35.8
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[CSS0024867] => Array
(
[gene_id] => CSS0024867
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[bit_score] => 67.8
[alignment_length] => 66
[identity_percentage] => 50.0
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CANSAT25G3585] => Array
(
[gene_id] => CANSAT25G3585
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[bit_score] => 67.8
[alignment_length] => 157
[identity_percentage] => 34.4
[species] => cansat
[common_name] => Cannabis sativa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CAN.G439.22] => Array
(
[gene_id] => CAN.G439.22
[e_value] => 2.4e-09
[bit_score] => 67.8
[alignment_length] => 161
[identity_percentage] => 36.0
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CiPaw.05G078500] => Array
(
[gene_id] => CiPaw.05G078500
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[bit_score] => 67.8
[alignment_length] => 184
[identity_percentage] => 33.2
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[FAN20G1953] => Array
(
[gene_id] => FAN20G1953
[e_value] => 2.4e-09
[bit_score] => 67.8
[alignment_length] => 126
[identity_percentage] => 38.1
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Lj6g0008557] => Array
(
[gene_id] => Lj6g0008557
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[bit_score] => 67.8
[alignment_length] => 165
[identity_percentage] => 34.5
[species] => lja
[common_name] => Lotus japonicus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[RcHm_v2.0_Chr6g0244751] => Array
(
[gene_id] => RcHm_v2.0_Chr6g0244751
[e_value] => 2.4e-09
[bit_score] => 67.8
[alignment_length] => 180
[identity_percentage] => 33.9
[species] => rch
[common_name] => Rosa chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Sc18g0006620] => Array
(
[gene_id] => Sc18g0006620
[e_value] => 2.4e-09
[bit_score] => 67.8
[alignment_length] => 182
[identity_percentage] => 34.1
[species] => sci
[common_name] => Simmondsia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[GSVIVG01024067001] => Array
(
[gene_id] => GSVIVG01024067001
[e_value] => 2.4e-09
[bit_score] => 67.8
[alignment_length] => 119
[identity_percentage] => 37.8
[species] => vvi
[common_name] => Vitis vinifera
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[DCAR_005658] => Array
(
[gene_id] => DCAR_005658
[e_value] => 3.2e-09
[bit_score] => 67.4
[alignment_length] => 258
[identity_percentage] => 26.7
[species] => dca
[common_name] => Daucus carota
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Eucgr.I01386] => Array
(
[gene_id] => Eucgr.I01386
[e_value] => 3.2e-09
[bit_score] => 67.4
[alignment_length] => 156
[identity_percentage] => 34.0
[species] => egr
[common_name] => Eucalyptus grandis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Thhalv10025156m.g] => Array
(
[gene_id] => Thhalv10025156m.g
[e_value] => 3.2e-09
[bit_score] => 67.4
[alignment_length] => 125
[identity_percentage] => 39.2
[species] => esa
[common_name] => Eutrema salsugineum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Sabra04G0113500] => Array
(
[gene_id] => Sabra04G0113500
[e_value] => 3.2e-09
[bit_score] => 67.4
[alignment_length] => 126
[identity_percentage] => 37.3
[species] => sbr
[common_name] => Salix brachista
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[SEGI_05343] => Array
(
[gene_id] => SEGI_05343
[e_value] => 3.2e-09
[bit_score] => 67.4
[alignment_length] => 152
[identity_percentage] => 35.5
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[SEGI_26009] => Array
(
[gene_id] => SEGI_26009
[e_value] => 3.2e-09
[bit_score] => 67.4
[alignment_length] => 156
[identity_percentage] => 36.5
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[TPR.G13221] => Array
(
[gene_id] => TPR.G13221
[e_value] => 3.2e-09
[bit_score] => 67.4
[alignment_length] => 153
[identity_percentage] => 35.3
[species] => tpr
[common_name] => Trifolium pratense
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[HPP92_004986] => Array
(
[gene_id] => HPP92_004986
[e_value] => 3.2e-09
[bit_score] => 67.4
[alignment_length] => 119
[identity_percentage] => 37.0
[species] => vpl
[common_name] => Vanilla planifolia
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[BcaNung00648] => Array
(
[gene_id] => BcaNung00648
[e_value] => 4.1e-09
[bit_score] => 67.0
[alignment_length] => 156
[identity_percentage] => 34.6
[species] => bca
[common_name] => Brassica carinata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cre02.g103350] => Array
(
[gene_id] => Cre02.g103350
[e_value] => 4.1e-09
[bit_score] => 67.0
[alignment_length] => 177
[identity_percentage] => 28.2
[species] => cre
[common_name] => Chlamydomonas reinhardtii
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CsaV3_7G000860] => Array
(
[gene_id] => CsaV3_7G000860
[e_value] => 4.1e-09
[bit_score] => 67.0
[alignment_length] => 119
[identity_percentage] => 36.1
[species] => csa
[common_name] => Cucumis sativus L.
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Duzib052G0515] => Array
(
[gene_id] => Duzib052G0515
[e_value] => 4.1e-09
[bit_score] => 67.0
[alignment_length] => 120
[identity_percentage] => 37.5
[species] => dzi
[common_name] => Durio zibethinus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Lsat_1_v5_gn_3_45780] => Array
(
[gene_id] => Lsat_1_v5_gn_3_45780
[e_value] => 4.1e-09
[bit_score] => 67.0
[alignment_length] => 119
[identity_percentage] => 37.8
[species] => lsa
[common_name] => Lactuca sativa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Lj1A587G24] => Array
(
[gene_id] => Lj1A587G24
[e_value] => 4.1e-09
[bit_score] => 67.0
[alignment_length] => 186
[identity_percentage] => 32.3
[species] => lonja
[common_name] => Lonicera japonica
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[PSO386G0109] => Array
(
[gene_id] => PSO386G0109
[e_value] => 4.1e-09
[bit_score] => 67.0
[alignment_length] => 159
[identity_percentage] => 34.0
[species] => pso
[common_name] => Papaver somniferum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[QL11p048533] => Array
(
[gene_id] => QL11p048533
[e_value] => 4.1e-09
[bit_score] => 67.0
[alignment_length] => 152
[identity_percentage] => 34.9
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[RcHm_v2.0_Chr6g0244631] => Array
(
[gene_id] => RcHm_v2.0_Chr6g0244631
[e_value] => 4.1e-09
[bit_score] => 67.0
[alignment_length] => 156
[identity_percentage] => 34.6
[species] => rch
[common_name] => Rosa chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Sabra04G0113700] => Array
(
[gene_id] => Sabra04G0113700
[e_value] => 4.1e-09
[bit_score] => 67.0
[alignment_length] => 130
[identity_percentage] => 35.4
[species] => sbr
[common_name] => Salix brachista
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[SEGI_08438] => Array
(
[gene_id] => SEGI_08438
[e_value] => 4.1e-09
[bit_score] => 67.0
[alignment_length] => 113
[identity_percentage] => 39.8
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[CSS0010198] => Array
(
[gene_id] => CSS0010198
[e_value] => 5.4e-09
[bit_score] => 66.6
[alignment_length] => 152
[identity_percentage] => 36.2
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Carub.0007s0541] => Array
(
[gene_id] => Carub.0007s0541
[e_value] => 5.4e-09
[bit_score] => 66.6
[alignment_length] => 125
[identity_percentage] => 36.8
[species] => cru
[common_name] => Capsella rubella
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CiPaw.05G078600] => Array
(
[gene_id] => CiPaw.05G078600
[e_value] => 5.4e-09
[bit_score] => 66.6
[alignment_length] => 184
[identity_percentage] => 32.6
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[ClCG02G004250] => Array
(
[gene_id] => ClCG02G004250
[e_value] => 5.4e-09
[bit_score] => 66.6
[alignment_length] => 155
[identity_percentage] => 34.8
[species] => cla
[common_name] => Citrullus lanatus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cc00_g05620] => Array
(
[gene_id] => Cc00_g05620
[e_value] => 5.4e-09
[bit_score] => 66.6
[alignment_length] => 119
[identity_percentage] => 37.8
[species] => ccan
[common_name] => Coffea canephora
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[MELO3C013371.2] => Array
(
[gene_id] => MELO3C013371.2
[e_value] => 5.4e-09
[bit_score] => 66.6
[alignment_length] => 119
[identity_percentage] => 36.1
[species] => cme
[common_name] => Cucumis melo
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Gorai.002G194000] => Array
(
[gene_id] => Gorai.002G194000
[e_value] => 5.4e-09
[bit_score] => 66.6
[alignment_length] => 119
[identity_percentage] => 37.0
[species] => gra
[common_name] => Gossypium raimondii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Manes.14G043100] => Array
(
[gene_id] => Manes.14G043100
[e_value] => 5.4e-09
[bit_score] => 66.6
[alignment_length] => 137
[identity_percentage] => 34.3
[species] => mes
[common_name] => Manihot esculenta
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Potri.004G169400] => Array
(
[gene_id] => Potri.004G169400
[e_value] => 5.4e-09
[bit_score] => 66.6
[alignment_length] => 119
[identity_percentage] => 38.7
[species] => ptr
[common_name] => Populus trichocarpa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cfa005206] => Array
(
[gene_id] => Cfa005206
[e_value] => 7.0e-09
[bit_score] => 66.2
[alignment_length] => 171
[identity_percentage] => 33.9
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[ClCG02G011630] => Array
(
[gene_id] => ClCG02G011630
[e_value] => 7.0e-09
[bit_score] => 66.2
[alignment_length] => 79
[identity_percentage] => 45.6
[species] => cla
[common_name] => Citrullus lanatus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Gohir.A01G164400] => Array
(
[gene_id] => Gohir.A01G164400
[e_value] => 7.0e-09
[bit_score] => 66.2
[alignment_length] => 195
[identity_percentage] => 32.3
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Medtr4g074030] => Array
(
[gene_id] => Medtr4g074030
[e_value] => 7.0e-09
[bit_score] => 66.2
[alignment_length] => 157
[identity_percentage] => 34.4
[species] => mtr
[common_name] => Medicago truncatula
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Sed0012086] => Array
(
[gene_id] => Sed0012086
[e_value] => 7.0e-09
[bit_score] => 66.2
[alignment_length] => 122
[identity_percentage] => 36.1
[species] => sed
[common_name] => Sechium edule
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Hund06412] => Array
(
[gene_id] => Hund06412
[e_value] => 7.0e-09
[bit_score] => 66.2
[alignment_length] => 157
[identity_percentage] => 33.8
[species] => sun
[common_name] => Selenicereus undatus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[vmacro19250] => Array
(
[gene_id] => vmacro19250
[e_value] => 7.0e-09
[bit_score] => 66.2
[alignment_length] => 161
[identity_percentage] => 34.2
[species] => vma
[common_name] => Vaccinium macrocarpon
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cpa.g.sc37.38] => Array
(
[gene_id] => Cpa.g.sc37.38
[e_value] => 9.2e-09
[bit_score] => 65.9
[alignment_length] => 118
[identity_percentage] => 39.0
[species] => cpa
[common_name] => Carica papaya
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Cfa005207] => Array
(
[gene_id] => Cfa005207
[e_value] => 9.2e-09
[bit_score] => 65.9
[alignment_length] => 171
[identity_percentage] => 33.9
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[FAN04G1626] => Array
(
[gene_id] => FAN04G1626
[e_value] => 9.2e-09
[bit_score] => 65.9
[alignment_length] => 106
[identity_percentage] => 37.7
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Gohir.D01G156400] => Array
(
[gene_id] => Gohir.D01G156400
[e_value] => 9.2e-09
[bit_score] => 65.9
[alignment_length] => 119
[identity_percentage] => 37.0
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Os04g0183500] => Array
(
[gene_id] => Os04g0183500
[e_value] => 9.2e-09
[bit_score] => 65.9
[alignment_length] => 108
[identity_percentage] => 39.8
[species] => osa
[common_name] => Oryza sativa ssp. japonica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[unitig_22.g6850] => Array
(
[gene_id] => unitig_22.g6850
[e_value] => 9.2e-09
[bit_score] => 65.9
[alignment_length] => 150
[identity_percentage] => 32.0
[species] => ugi
[common_name] => Utricularia gibba
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D005935
)
)
[vmacro17375] => Array
(
[gene_id] => vmacro17375
[e_value] => 9.2e-09
[bit_score] => 65.9
[alignment_length] => 157
[identity_percentage] => 33.1
[species] => vma
[common_name] => Vaccinium macrocarpon
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CSS0036625] => Array
(
[gene_id] => CSS0036625
[e_value] => 1.2e-08
[bit_score] => 65.5
[alignment_length] => 76
[identity_percentage] => 46.1
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CAN.G1008.42] => Array
(
[gene_id] => CAN.G1008.42
[e_value] => 1.2e-08
[bit_score] => 65.5
[alignment_length] => 163
[identity_percentage] => 30.1
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[GSVIVG01024065001] => Array
(
[gene_id] => GSVIVG01024065001
[e_value] => 1.2e-08
[bit_score] => 65.5
[alignment_length] => 118
[identity_percentage] => 37.3
[species] => vvi
[common_name] => Vitis vinifera
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[GSVIVG01024069001] => Array
(
[gene_id] => GSVIVG01024069001
[e_value] => 1.2e-08
[bit_score] => 65.5
[alignment_length] => 125
[identity_percentage] => 38.4
[species] => vvi
[common_name] => Vitis vinifera
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Sed0022074] => Array
(
[gene_id] => Sed0022074
[e_value] => 1.6e-08
[bit_score] => 65.1
[alignment_length] => 119
[identity_percentage] => 36.1
[species] => sed
[common_name] => Sechium edule
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[TPR.G37395] => Array
(
[gene_id] => TPR.G37395
[e_value] => 1.6e-08
[bit_score] => 65.1
[alignment_length] => 159
[identity_percentage] => 30.8
[species] => tpr
[common_name] => Trifolium pratense
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[ATR0810G070] => Array
(
[gene_id] => ATR0810G070
[e_value] => 2.0e-08
[bit_score] => 64.7
[alignment_length] => 117
[identity_percentage] => 39.3
[species] => atr
[common_name] => Amborella trichopoda
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[AagrBONN_evm.TU.Sc2ySwM_368.1236] => Array
(
[gene_id] => AagrBONN_evm.TU.Sc2ySwM_368.1236
[e_value] => 2.0e-08
[bit_score] => 64.7
[alignment_length] => 164
[identity_percentage] => 33.5
[species] => aag
[common_name] => Anthoceros agrestis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cfa005204] => Array
(
[gene_id] => Cfa005204
[e_value] => 2.0e-08
[bit_score] => 64.7
[alignment_length] => 171
[identity_percentage] => 33.9
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[AUR62004972] => Array
(
[gene_id] => AUR62004972
[e_value] => 2.0e-08
[bit_score] => 64.7
[alignment_length] => 156
[identity_percentage] => 35.9
[species] => cqu
[common_name] => Chenopodium quinoa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Eucgr.I01381] => Array
(
[gene_id] => Eucgr.I01381
[e_value] => 2.0e-08
[bit_score] => 64.7
[alignment_length] => 111
[identity_percentage] => 39.6
[species] => egr
[common_name] => Eucalyptus grandis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PRCOL_00005593] => Array
(
[gene_id] => PRCOL_00005593
[e_value] => 2.0e-08
[bit_score] => 64.7
[alignment_length] => 105
[identity_percentage] => 37.1
[species] => pco
[common_name] => Prasinoderma coloniale
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D333248
)
)
[CSS0041831] => Array
(
[gene_id] => CSS0041831
[e_value] => 2.7e-08
[bit_score] => 64.3
[alignment_length] => 156
[identity_percentage] => 30.8
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[arahy.Tifrunner.gnm1.ann1.H2TH33] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.H2TH33
[e_value] => 3.5e-08
[bit_score] => 63.9
[alignment_length] => 125
[identity_percentage] => 36.8
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CAN.G588.33] => Array
(
[gene_id] => CAN.G588.33
[e_value] => 3.5e-08
[bit_score] => 63.9
[alignment_length] => 76
[identity_percentage] => 44.7
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[C01p03920] => Array
(
[gene_id] => C01p03920
[e_value] => 4.6e-08
[bit_score] => 63.5
[alignment_length] => 76
[identity_percentage] => 46.1
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CiPaw.06G124600] => Array
(
[gene_id] => CiPaw.06G124600
[e_value] => 4.6e-08
[bit_score] => 63.5
[alignment_length] => 112
[identity_percentage] => 36.6
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CiPaw.06G124700] => Array
(
[gene_id] => CiPaw.06G124700
[e_value] => 4.6e-08
[bit_score] => 63.5
[alignment_length] => 112
[identity_percentage] => 37.5
[species] => cil
[common_name] => Carya illinoinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Migut.B00114] => Array
(
[gene_id] => Migut.B00114
[e_value] => 4.6e-08
[bit_score] => 63.5
[alignment_length] => 131
[identity_percentage] => 35.9
[species] => egut
[common_name] => Erythranthe guttata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Os10g0155400] => Array
(
[gene_id] => Os10g0155400
[e_value] => 4.6e-08
[bit_score] => 63.5
[alignment_length] => 119
[identity_percentage] => 37.8
[species] => osa
[common_name] => Oryza sativa ssp. japonica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Psat7g174360] => Array
(
[gene_id] => Psat7g174360
[e_value] => 4.6e-08
[bit_score] => 63.5
[alignment_length] => 80
[identity_percentage] => 43.8
[species] => psa
[common_name] => Pisum sativum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[QL04p012585] => Array
(
[gene_id] => QL04p012585
[e_value] => 4.6e-08
[bit_score] => 63.5
[alignment_length] => 61
[identity_percentage] => 50.8
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D034080
)
)
[QL11p047948] => Array
(
[gene_id] => QL11p047948
[e_value] => 4.6e-08
[bit_score] => 63.5
[alignment_length] => 76
[identity_percentage] => 44.7
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Actinidia25502] => Array
(
[gene_id] => Actinidia25502
[e_value] => 6.0e-08
[bit_score] => 63.2
[alignment_length] => 104
[identity_percentage] => 35.6
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D003600
[ORTHOFAM] => ORTHO05D004129
)
)
[A01p03640] => Array
(
[gene_id] => A01p03640
[e_value] => 6.0e-08
[bit_score] => 63.2
[alignment_length] => 156
[identity_percentage] => 34.0
[species] => bna
[common_name] => Brassica napus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[BraA01t00349Z] => Array
(
[gene_id] => BraA01t00349Z
[e_value] => 6.0e-08
[bit_score] => 63.2
[alignment_length] => 156
[identity_percentage] => 34.0
[species] => bra
[common_name] => Brassica rapa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Dinv39525] => Array
(
[gene_id] => Dinv39525
[e_value] => 6.0e-08
[bit_score] => 63.2
[alignment_length] => 68
[identity_percentage] => 48.5
[species] => din
[common_name] => Davidia involucrata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[MD05G1117000] => Array
(
[gene_id] => MD05G1117000
[e_value] => 6.0e-08
[bit_score] => 63.2
[alignment_length] => 162
[identity_percentage] => 32.7
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Peaxi162Scf00362g00956] => Array
(
[gene_id] => Peaxi162Scf00362g00956
[e_value] => 6.0e-08
[bit_score] => 63.2
[alignment_length] => 154
[identity_percentage] => 33.8
[species] => pax
[common_name] => Petunia axillaris
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[RcHm_v2.0_Chr7g0188311] => Array
(
[gene_id] => RcHm_v2.0_Chr7g0188311
[e_value] => 6.0e-08
[bit_score] => 63.2
[alignment_length] => 106
[identity_percentage] => 34.0
[species] => rch
[common_name] => Rosa chinensis
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Actinidia15940] => Array
(
[gene_id] => Actinidia15940
[e_value] => 7.8e-08
[bit_score] => 62.8
[alignment_length] => 72
[identity_percentage] => 45.8
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[arahy.Tifrunner.gnm1.ann1.G2X338] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.G2X338
[e_value] => 7.8e-08
[bit_score] => 62.8
[alignment_length] => 157
[identity_percentage] => 34.4
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Haze_25342] => Array
(
[gene_id] => Haze_25342
[e_value] => 7.8e-08
[bit_score] => 62.8
[alignment_length] => 108
[identity_percentage] => 38.0
[species] => cav
[common_name] => Corylus avellana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Dinv07082] => Array
(
[gene_id] => Dinv07082
[e_value] => 7.8e-08
[bit_score] => 62.8
[alignment_length] => 98
[identity_percentage] => 38.8
[species] => din
[common_name] => Davidia involucrata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Nitab4.5_0000615g0030] => Array
(
[gene_id] => Nitab4.5_0000615g0030
[e_value] => 7.8e-08
[bit_score] => 62.8
[alignment_length] => 114
[identity_percentage] => 37.7
[species] => nta
[common_name] => Nicotiana tabacum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[QL04p013580] => Array
(
[gene_id] => QL04p013580
[e_value] => 7.8e-08
[bit_score] => 62.8
[alignment_length] => 62
[identity_percentage] => 50.0
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D034080
)
)
[QL11p048023] => Array
(
[gene_id] => QL11p048023
[e_value] => 7.8e-08
[bit_score] => 62.8
[alignment_length] => 156
[identity_percentage] => 32.7
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cfa025544] => Array
(
[gene_id] => Cfa025544
[e_value] => 1.0e-07
[bit_score] => 62.4
[alignment_length] => 129
[identity_percentage] => 29.5
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D021025
[ORTHOFAM] => ORTHO05D017788
)
)
[Lalb_Chr03g0025011] => Array
(
[gene_id] => Lalb_Chr03g0025011
[e_value] => 1.0e-07
[bit_score] => 62.4
[alignment_length] => 156
[identity_percentage] => 33.3
[species] => lal
[common_name] => Lupinus albus
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[SGA_v2.0_scaffold5G02813] => Array
(
[gene_id] => SGA_v2.0_scaffold5G02813
[e_value] => 1.0e-07
[bit_score] => 62.4
[alignment_length] => 188
[identity_percentage] => 28.2
[species] => sas
[common_name] => Striga asiatica
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[TAR381G0991] => Array
(
[gene_id] => TAR381G0991
[e_value] => 1.0e-07
[bit_score] => 62.4
[alignment_length] => 72
[identity_percentage] => 48.6
[species] => tar
[common_name] => Trochodendron aralioides
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CSS0004892] => Array
(
[gene_id] => CSS0004892
[e_value] => 1.3e-07
[bit_score] => 62.0
[alignment_length] => 76
[identity_percentage] => 43.4
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CDE05G1658] => Array
(
[gene_id] => CDE05G1658
[e_value] => 1.3e-07
[bit_score] => 62.0
[alignment_length] => 51
[identity_percentage] => 52.9
[species] => cde
[common_name] => Ceratophyllum demersum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Lj9A488T69] => Array
(
[gene_id] => Lj9A488T69
[e_value] => 1.3e-07
[bit_score] => 62.0
[alignment_length] => 169
[identity_percentage] => 30.8
[species] => lonja
[common_name] => Lonicera japonica
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[arahy.Tifrunner.gnm1.ann1.V8PLM8] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.V8PLM8
[e_value] => 1.7e-07
[bit_score] => 61.6
[alignment_length] => 157
[identity_percentage] => 34.4
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[MELO3C020794.2] => Array
(
[gene_id] => MELO3C020794.2
[e_value] => 1.7e-07
[bit_score] => 61.6
[alignment_length] => 68
[identity_percentage] => 47.1
[species] => cme
[common_name] => Cucumis melo
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CSS0013885] => Array
(
[gene_id] => CSS0013885
[e_value] => 2.3e-07
[bit_score] => 61.2
[alignment_length] => 171
[identity_percentage] => 33.9
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CSS0048263] => Array
(
[gene_id] => CSS0048263
[e_value] => 2.3e-07
[bit_score] => 61.2
[alignment_length] => 154
[identity_percentage] => 33.1
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Glyma.08G106200] => Array
(
[gene_id] => Glyma.08G106200
[e_value] => 2.3e-07
[bit_score] => 61.2
[alignment_length] => 68
[identity_percentage] => 47.1
[species] => gma
[common_name] => Glycine max
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Gorai.002G193800] => Array
(
[gene_id] => Gorai.002G193800
[e_value] => 2.3e-07
[bit_score] => 61.2
[alignment_length] => 68
[identity_percentage] => 45.6
[species] => gra
[common_name] => Gossypium raimondii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PGSC0003DMG400002019] => Array
(
[gene_id] => PGSC0003DMG400002019
[e_value] => 2.3e-07
[bit_score] => 61.2
[alignment_length] => 76
[identity_percentage] => 42.1
[species] => stu
[common_name] => Solanum tuberosum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[TWI75G1826] => Array
(
[gene_id] => TWI75G1826
[e_value] => 2.3e-07
[bit_score] => 61.2
[alignment_length] => 179
[identity_percentage] => 34.1
[species] => twi
[common_name] => Tripterygium wilfordii
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[GSVIVG01019282001] => Array
(
[gene_id] => GSVIVG01019282001
[e_value] => 2.3e-07
[bit_score] => 61.2
[alignment_length] => 156
[identity_percentage] => 29.5
[species] => vvi
[common_name] => Vitis vinifera
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Os04g0184801] => Array
(
[gene_id] => Os04g0184801
[e_value] => 3.0e-07
[bit_score] => 60.8
[alignment_length] => 72
[identity_percentage] => 45.8
[species] => osa
[common_name] => Oryza sativa ssp. japonica
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Peaxi162Scf00684g00029] => Array
(
[gene_id] => Peaxi162Scf00684g00029
[e_value] => 3.0e-07
[bit_score] => 60.8
[alignment_length] => 154
[identity_percentage] => 34.4
[species] => pax
[common_name] => Petunia axillaris
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[QL02p039765] => Array
(
[gene_id] => QL02p039765
[e_value] => 3.0e-07
[bit_score] => 60.8
[alignment_length] => 64
[identity_percentage] => 50.0
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Haze_10389] => Array
(
[gene_id] => Haze_10389
[e_value] => 3.9e-07
[bit_score] => 60.5
[alignment_length] => 109
[identity_percentage] => 36.7
[species] => cav
[common_name] => Corylus avellana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Lalb_Chr15g0090421] => Array
(
[gene_id] => Lalb_Chr15g0090421
[e_value] => 3.9e-07
[bit_score] => 60.5
[alignment_length] => 73
[identity_percentage] => 39.7
[species] => lal
[common_name] => Lupinus albus
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Nn7g36788] => Array
(
[gene_id] => Nn7g36788
[e_value] => 3.9e-07
[bit_score] => 60.5
[alignment_length] => 156
[identity_percentage] => 33.3
[species] => nnu
[common_name] => Nelumbo nucifera
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[AagrBONN_evm.TU.Sc2ySwM_368.1238__1239] => Array
(
[gene_id] => AagrBONN_evm.TU.Sc2ySwM_368.1238__1239
[e_value] => 5.0e-07
[bit_score] => 60.1
[alignment_length] => 164
[identity_percentage] => 32.3
[species] => aag
[common_name] => Anthoceros agrestis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CSS0046230] => Array
(
[gene_id] => CSS0046230
[e_value] => 6.6e-07
[bit_score] => 59.7
[alignment_length] => 53
[identity_percentage] => 47.2
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[CAN.G439.24] => Array
(
[gene_id] => CAN.G439.24
[e_value] => 8.6e-07
[bit_score] => 59.3
[alignment_length] => 94
[identity_percentage] => 39.4
[species] => can
[common_name] => Capsicum annuum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D000001
)
)
[Cpa.g.sc20.48] => Array
(
[gene_id] => Cpa.g.sc20.48
[e_value] => 8.6e-07
[bit_score] => 59.3
[alignment_length] => 114
[identity_percentage] => 36.0
[species] => cpa
[common_name] => Carica papaya
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[Cfa005205] => Array
(
[gene_id] => Cfa005205
[e_value] => 8.6e-07
[bit_score] => 59.3
[alignment_length] => 157
[identity_percentage] => 32.5
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[DCAR_003244] => Array
(
[gene_id] => DCAR_003244
[e_value] => 8.6e-07
[bit_score] => 59.3
[alignment_length] => 115
[identity_percentage] => 33.9
[species] => dca
[common_name] => Daucus carota
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[PGSC0003DMG400001626] => Array
(
[gene_id] => PGSC0003DMG400001626
[e_value] => 8.6e-07
[bit_score] => 59.3
[alignment_length] => 88
[identity_percentage] => 38.6
[species] => stu
[common_name] => Solanum tuberosum
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Ah.11g047030] => Array
(
[gene_id] => Ah.11g047030
[e_value] => 1.1e-06
[bit_score] => 58.9
[alignment_length] => 129
[identity_percentage] => 31.8
[species] => amhyb
[common_name] => Amaranthus hybridus
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[arahy.Tifrunner.gnm1.ann1.5X1F0G] => Array
(
[gene_id] => arahy.Tifrunner.gnm1.ann1.5X1F0G
[e_value] => 1.1e-06
[bit_score] => 58.9
[alignment_length] => 125
[identity_percentage] => 35.2
[species] => arhy
[common_name] => Arachis hypogaea
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[CSS0009738] => Array
(
[gene_id] => CSS0009738
[e_value] => 1.1e-06
[bit_score] => 58.9
[alignment_length] => 134
[identity_percentage] => 34.3
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Cfa023711] => Array
(
[gene_id] => Cfa023711
[e_value] => 1.5e-06
[bit_score] => 58.5
[alignment_length] => 170
[identity_percentage] => 27.6
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D017788
)
)
[Cfa024229] => Array
(
[gene_id] => Cfa024229
[e_value] => 1.5e-06
[bit_score] => 58.5
[alignment_length] => 73
[identity_percentage] => 41.1
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[QL11p049120] => Array
(
[gene_id] => QL11p049120
[e_value] => 1.5e-06
[bit_score] => 58.5
[alignment_length] => 72
[identity_percentage] => 43.1
[species] => qlo
[common_name] => Quercus lobata
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[FAN27G0194] => Array
(
[gene_id] => FAN27G0194
[e_value] => 1.9e-06
[bit_score] => 58.2
[alignment_length] => 76
[identity_percentage] => 42.1
[species] => fan
[common_name] => Fragaria x ananassa
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Glyma.08G006267] => Array
(
[gene_id] => Glyma.08G006267
[e_value] => 1.9e-06
[bit_score] => 58.2
[alignment_length] => 99
[identity_percentage] => 36.4
[species] => gma
[common_name] => Glycine max
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[SEGI_21767] => Array
(
[gene_id] => SEGI_21767
[e_value] => 1.9e-06
[bit_score] => 58.2
[alignment_length] => 43
[identity_percentage] => 62.8
[species] => sgi
[common_name] => Sequoiadendron giganteum
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D001283
)
)
[Cfa027295] => Array
(
[gene_id] => Cfa027295
[e_value] => 2.5e-06
[bit_score] => 57.8
[alignment_length] => 139
[identity_percentage] => 28.8
[species] => cfa
[common_name] => Carpinus fangiana
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D017788
)
)
[Eucgr.I02570] => Array
(
[gene_id] => Eucgr.I02570
[e_value] => 2.5e-06
[bit_score] => 57.8
[alignment_length] => 149
[identity_percentage] => 28.9
[species] => egr
[common_name] => Eucalyptus grandis
[gf] => Array
(
[HOMFAM] => HOM05D001206
[ORTHOFAM] => ORTHO05D002068
)
)
[ECA238G2250] => Array
(
[gene_id] => ECA238G2250
[e_value] => 3.3e-06
[bit_score] => 57.4
[alignment_length] => 66
[identity_percentage] => 43.9
[species] => eca
[common_name] => Erigeron canadensis
[gf] => Array
(
[HOMFAM] => HOM05D000006
[ORTHOFAM] => ORTHO05D000001
)
)
[FvH4_2g01800] => Array
(
[gene_id] => FvH4_2g01800
[e_value] => 3.3e-06
[bit_score] => 57.4
[alignment_length] => 68
[identity_percentage] => 45.6
[species] => fve
[common_name] => Fragaria vesca
[gf] => Array
(
[HOMFAM] => HOM05D001375
[ORTHOFAM] => ORTHO05D001222
)
)
[Gorai.008G211800] => Array
(
[gene_id] => Gorai.008G211800
[e_value] => 4.3e-06
[bit_score] => 57.0
[alignment_length] => 77
[identity_percentage] => 37.7
[species] => gra
[common_name] => Gossypium raimondii
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Actinidia13000] => Array
(
[gene_id] => Actinidia13000
[e_value] => 5.6e-06
[bit_score] => 56.6
[alignment_length] => 34
[identity_percentage] => 76.5
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D018192
)
)
[Actinidia24970] => Array
(
[gene_id] => Actinidia24970
[e_value] => 5.6e-06
[bit_score] => 56.6
[alignment_length] => 34
[identity_percentage] => 76.5
[species] => ach
[common_name] => Actinidia chinensis
[gf] => Array
(
[HOMFAM] => HOM05D001310
[ORTHOFAM] => ORTHO05D018192
)
)
[Gohir.A12G194800] => Array
(
[gene_id] => Gohir.A12G194800
[e_value] => 9.5e-06
[bit_score] => 55.8
[alignment_length] => 54
[identity_percentage] => 40.7
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[Gohir.D12G197200] => Array
(
[gene_id] => Gohir.D12G197200
[e_value] => 9.5e-06
[bit_score] => 55.8
[alignment_length] => 142
[identity_percentage] => 27.5
[species] => ghi
[common_name] => Gossypium hirsutum
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
[MD14G1144500] => Array
(
[gene_id] => MD14G1144500
[e_value] => 9.5e-06
[bit_score] => 55.8
[alignment_length] => 163
[identity_percentage] => 28.2
[species] => mdo
[common_name] => Malus domestica
[gf] => Array
(
[HOMFAM] => HOM05D005461
[ORTHOFAM] => ORTHO05D007157
)
)
)
[similarity_hits_species] => Array
(
[twi] => Array
(
[0] => TWI36G0290
[1] => TWI81G1069
[2] => TWI60G0055
[3] => TWI59G1224
[4] => TWI79G0285
[5] => TWI75G0035
[6] => TWI14G1249
[7] => TWI23G1316
[8] => TWI38G0487
[9] => TWI23G0268
[10] => TWI75G1237
[11] => TWI75G1622
[12] => TWI75G0690
[13] => TWI75G1826
)
[acertr] => Array
(
[0] => Atru.chr2.445
[1] => Atru.chr9.1733
[2] => Atru.chr6.1140
[3] => Atru.chr4.1112
[4] => Atru.chr6.3565
[5] => Atru.chr6.1950
[6] => Atru.chr5.3247
[7] => Atru.chr5.3248
)
[mes] => Array
(
[0] => Manes.09G165600
[1] => Manes.06G006100
[2] => Manes.14G171400
[3] => Manes.07G031700
[4] => Manes.13G079500
[5] => Manes.10G094600
[6] => Manes.01G129100
[7] => Manes.11G091532
[8] => Manes.11G091058
[9] => Manes.04G077700
[10] => Manes.14G043000
[11] => Manes.14G043100
)
[ccl] => Array
(
[0] => Ciclev10001213m.g
[1] => Ciclev10001239m.g
[2] => Ciclev10007714m.g
[3] => Ciclev10028606m.g
[4] => Ciclev10001093m.g
[5] => Ciclev10014821m.g
[6] => Ciclev10030921m.g
[7] => Ciclev10028187m.g
[8] => Ciclev10030294m.g
[9] => Ciclev10028286m.g
[10] => Ciclev10028203m.g
)
[vvi] => Array
(
[0] => GSVIVG01000036001
[1] => GSVIVG01008433001
[2] => GSVIVG01038788001
[3] => GSVIVG01022368001
[4] => GSVIVG01020788001
[5] => GSVIVG01038529001
[6] => GSVIVG01019287001
[7] => GSVIVG01019284001
[8] => GSVIVG01024064001
[9] => GSVIVG01024068001
[10] => GSVIVG01024067001
[11] => GSVIVG01024065001
[12] => GSVIVG01024069001
[13] => GSVIVG01019282001
)
[ptr] => Array
(
[0] => Potri.013G024100
[1] => Potri.015G038600
[2] => Potri.012G046900
[3] => Potri.001G205300
[4] => Potri.013G024200
[5] => Potri.007G098600
[6] => Potri.005G070300
[7] => Potri.001G285900
[8] => Potri.018G086350
[9] => Potri.015G109400
[10] => Potri.004G171300
[11] => Potri.009G130700
[12] => Potri.009G130500
[13] => Potri.004G171000
[14] => Potri.004G169300
[15] => Potri.009G130400
[16] => Potri.004G169400
)
[ppe] => Array
(
[0] => Prupe.6G327700
[1] => Prupe.5G233600
[2] => Prupe.8G059900
[3] => Prupe.4G282000
[4] => Prupe.3G169900
[5] => Prupe.8G076300
[6] => Prupe.5G138700
[7] => Prupe.8G161800
[8] => Prupe.8G161700
[9] => Prupe.8G161600
[10] => Prupe.8G161900
)
[camsi] => Array
(
[0] => CSS0022622
[1] => CSS0019715
[2] => CSS0018609
[3] => CSS0011156
[4] => CSS0036070
[5] => CSS0021078
[6] => CSS0040216
[7] => CSS0001960
[8] => CSS0017124
[9] => CSS0014076
[10] => CSS0050390
[11] => CSS0046406
[12] => CSS0000304
[13] => CSS0038399
[14] => CSS0050110
[15] => CSS0023121
[16] => CSS0035205
[17] => CSS0024867
[18] => CSS0010198
[19] => CSS0036625
[20] => CSS0041831
[21] => CSS0004892
[22] => CSS0013885
[23] => CSS0048263
[24] => CSS0046230
[25] => CSS0009738
)
[nnu] => Array
(
[0] => Nn4g26223
[1] => Nn3g18286
[2] => Nn4g24242
[3] => Nn5g30089
[4] => Nn1g08806
[5] => Nn5g28308
[6] => Nn6g34432
[7] => Nn1g05689
[8] => Nn3g16200
[9] => Nn1g05916
[10] => Nn7g36788
)
[fan] => Array
(
[0] => FAN02G1114
[1] => FAN14G5649
[2] => FAN05G0213
[3] => FAN05G4155
[4] => FAN09G2049
[5] => FAN14G5181
[6] => FAN18G0790
[7] => FAN08G1056
[8] => FAN13G2361
[9] => FAN04G0115
[10] => FAN26G1265
[11] => FAN28G1033
[12] => FAN24G1517
[13] => FAN27G1668
[14] => FAN15G0254
[15] => FAN26G0547
[16] => FAN02G0831
[17] => FAN14G2675
[18] => FAN08G1284
[19] => FAN18G0482
[20] => FAN23G0439
[21] => FAN27G1777
[22] => FAN15G3245
[23] => FAN19G1240
[24] => FAN20G2903
[25] => FAN15G0808
[26] => FAN24G2437
[27] => FAN20G1953
[28] => FAN04G1626
[29] => FAN27G0194
)
[rsi] => Array
(
[0] => Rhsim05G0143000
[1] => RhsimUnG0207700
[2] => Rhsim13G0168400
[3] => Rhsim08G0126200
[4] => Rhsim05G0106400
[5] => Rhsim01G0085600
[6] => Rhsim01G0080800
[7] => Rhsim08G0002000
[8] => Rhsim06G0124000
[9] => Rhsim05G0095600
[10] => Rhsim08G0199900
[11] => Rhsim08G0183700
[12] => Rhsim11G0189200
[13] => Rhsim05G0062500
[14] => Rhsim05G0062700
)
[cav] => Array
(
[0] => Haze_04208
[1] => Haze_10723
[2] => Haze_18854
[3] => Haze_27080
[4] => Haze_13462
[5] => Haze_02187
[6] => Haze_25342
[7] => Haze_10389
)
[sbr] => Array
(
[0] => Sabra13G0025700
[1] => Sabra12G0032900
[2] => Sabra15G0037500
[3] => Sabra01G0158200
[4] => Sabra07G0082000
[5] => Sabra16G0178300
[6] => Sabra18G0074600
[7] => Sabra15G0131600
[8] => Sabra04G0113900
[9] => Sabra09G0101000
[10] => Sabra04G0113500
[11] => Sabra04G0113700
)
[qlo] => Array
(
[0] => QL03p005900
[1] => QL03p006495
[2] => QL03p006454
[3] => QL03p005872
[4] => QL03p006470
[5] => QL03p005842
[6] => QL03p005878
[7] => QL03p006480
[8] => QL10p029608
[9] => QL11p021330
[10] => QL10p040090
[11] => QL11p026734
[12] => QL08p043357
[13] => QL10p000170
[14] => QL11p048406
[15] => QL11p047888
[16] => QL11p048011
[17] => QL11p047962
[18] => QL11p047895
[19] => QL11p047901
[20] => QL11p048119
[21] => QL11p047952
[22] => QL11p048093
[23] => QL11p048533
[24] => QL04p012585
[25] => QL11p047948
[26] => QL04p013580
[27] => QL11p048023
[28] => QL02p039765
[29] => QL11p049120
)
[mdo] => Array
(
[0] => MD04G1207000
[1] => MD12G1220900
[2] => MD00G1192400
[3] => MD12G1221100
[4] => MD12G1220800
[5] => MD00G1147200
[6] => MD00G1147100
[7] => MD06G1227100
[8] => MD14G1236500
[9] => MD10G1051400
[10] => MD05G1044300
[11] => MD12G1221300
[12] => MD00G1192500
[13] => MD15G1139000
[14] => MD09G1156700
[15] => MD17G1143200
[16] => MD05G1050200
[17] => MD00G1076700
[18] => MD10G1120200
[19] => MD10G1120300
[20] => MD05G1117200
[21] => MD10G1120400
[22] => MD05G1117000
[23] => MD14G1144500
)
[cil] => Array
(
[0] => CiPaw.07G016200
[1] => CiPaw.07G016400
[2] => CiPaw.15G143400
[3] => CiPaw.16G093500
[4] => CiPaw.05G034800
[5] => CiPaw.04G077300
[6] => CiPaw.03G115500
[7] => CiPaw.03G196100
[8] => CiPaw.05G026300
[9] => CiPaw.05G026500
[10] => CiPaw.11G031400
[11] => CiPaw.05G078400
[12] => CiPaw.05G078100
[13] => CiPaw.05G078200
[14] => CiPaw.05G078500
[15] => CiPaw.05G078600
[16] => CiPaw.06G124600
[17] => CiPaw.06G124700
)
[tar] => Array
(
[0] => TAR633G0162
[1] => TAR633G1828
[2] => TAR374G1119
[3] => TAR628G1222
[4] => TAR622G0518
[5] => TAR381G0025
[6] => TAR622G0809
[7] => TAR629G1684
[8] => TAR628G1628
[9] => TAR633G0377
[10] => TAR381G1166
[11] => TAR628G0562
[12] => TAR381G1031
[13] => TAR381G0102
[14] => TAR375G0188
[15] => TAR381G1406
[16] => TAR628G1148
[17] => TAR381G0991
)
[rch] => Array
(
[0] => RcHm_v2.0_Chr3g0454411
[1] => RcHm_v2.0_Chr3g0454491
[2] => RcHm_v2.0_Chr3g0454461
[3] => RcHm_v2.0_Chr7g0178361
[4] => RcHm_v2.0_Chr3g0454431
[5] => RcHm_v2.0_Chr2g0123671
[6] => RcHm_v2.0_Chr6g0269381
[7] => RcHm_v2.0_Chr2g0150631
[8] => RcHm_v2.0_Chr7g0188291
[9] => RcHm_v2.0_Chr6g0244621
[10] => RcHm_v2.0_Chr6g0244721
[11] => RcHm_v2.0_Chr6g0244611
[12] => RcHm_v2.0_Chr6g0244741
[13] => RcHm_v2.0_Chr6g0244751
[14] => RcHm_v2.0_Chr6g0244631
[15] => RcHm_v2.0_Chr7g0188311
)
[cansat] => Array
(
[0] => CANSAT54G0385
[1] => CANSAT80G2848
[2] => CANSAT01G2722
[3] => CANSAT54G1477
[4] => CANSAT64G1074
[5] => CANSAT25G0507
[6] => CANSAT25G3585
)
[arhy] => Array
(
[0] => arahy.Tifrunner.gnm1.ann1.QD3ZBY
[1] => arahy.Tifrunner.gnm1.ann1.6LU9QT
[2] => arahy.Tifrunner.gnm1.ann1.60IM8Z
[3] => arahy.Tifrunner.gnm1.ann1.WS4LBJ
[4] => arahy.Tifrunner.gnm1.ann1.DWV9W6
[5] => arahy.Tifrunner.gnm1.ann1.LBLS7P
[6] => arahy.Tifrunner.gnm1.ann1.DEN2HU
[7] => arahy.Tifrunner.gnm1.ann1.K2WU28
[8] => arahy.Tifrunner.gnm1.ann1.YX4B4M
[9] => arahy.Tifrunner.gnm1.ann1.5JS7Y0
[10] => arahy.Tifrunner.gnm1.ann1.J66KI7
[11] => arahy.Tifrunner.gnm1.ann1.ZY648K
[12] => arahy.Tifrunner.gnm1.ann1.KRA1N7
[13] => arahy.Tifrunner.gnm1.ann1.02U3XB
[14] => arahy.Tifrunner.gnm1.ann1.BZT8G9
[15] => arahy.Tifrunner.gnm1.ann1.DXFN4R
[16] => arahy.Tifrunner.gnm1.ann1.3DT0RH
[17] => arahy.Tifrunner.gnm1.ann1.38K6F5
[18] => arahy.Tifrunner.gnm1.ann1.ZLV2ZH
[19] => arahy.Tifrunner.gnm1.ann1.UDW2VH
[20] => arahy.Tifrunner.gnm1.ann1.YX3IJQ
[21] => arahy.Tifrunner.gnm1.ann1.N2J13H
[22] => arahy.Tifrunner.gnm1.ann1.P8IJRR
[23] => arahy.Tifrunner.gnm1.ann1.K2FSVA
[24] => arahy.Tifrunner.gnm1.ann1.NWD6TW
[25] => arahy.Tifrunner.gnm1.ann1.Y5AKFB
[26] => arahy.Tifrunner.gnm1.ann1.R6RTRV
[27] => arahy.Tifrunner.gnm1.ann1.GXD1I8
[28] => arahy.Tifrunner.gnm1.ann1.X4TLRY
[29] => arahy.Tifrunner.gnm1.ann1.H2TH33
[30] => arahy.Tifrunner.gnm1.ann1.G2X338
[31] => arahy.Tifrunner.gnm1.ann1.V8PLM8
[32] => arahy.Tifrunner.gnm1.ann1.5X1F0G
)
[dzi] => Array
(
[0] => Duzib106G0949
[1] => Duzib177G0593
[2] => Duzib177G0013
[3] => Duzib177G0831
[4] => Duzib177G1171
[5] => Duzib132G0694
[6] => Duzib068G0977
[7] => Duzib052G0493
[8] => Duzib205G1371
[9] => Duzib147G0233
[10] => Duzib187G1023
[11] => Duzib264G0587
[12] => Duzib052G0331
[13] => Duzib132G1101
[14] => Duzib248G0450
[15] => Duzib052G0515
)
[pgr] => Array
(
[0] => PGR083G2513
[1] => PGR083G0598
[2] => PGR083G0653
[3] => PGR083G1224
[4] => PGR142G1649
[5] => PGR142G2427
[6] => PGR142G3443
[7] => PGR119G1042
[8] => PGR142G3322
[9] => PGR102G2106
[10] => PGR042G2671
[11] => PGR142G1342
[12] => PGR142G3522
)
[cfa] => Array
(
[0] => Cfa006574
[1] => Cfa006573
[2] => Cfa021204
[3] => Cfa005584
[4] => Cfa006575
[5] => Cfa015126
[6] => Cfa002167
[7] => Cfa024115
[8] => Cfa026647
[9] => Cfa018691
[10] => Cfa025084
[11] => Cfa001628
[12] => Cfa005202
[13] => Cfa005201
[14] => Cfa022689
[15] => Cfa005206
[16] => Cfa005207
[17] => Cfa005204
[18] => Cfa025544
[19] => Cfa005205
[20] => Cfa023711
[21] => Cfa024229
[22] => Cfa027295
)
[egr] => Array
(
[0] => Eucgr.B01994
[1] => Eucgr.B01996
[2] => Eucgr.I02661
[3] => Eucgr.L03224
[4] => Eucgr.K02274
[5] => Eucgr.I00054
[6] => Eucgr.K01190
[7] => Eucgr.I02569
[8] => Eucgr.K02184
[9] => Eucgr.I01380
[10] => Eucgr.I01383
[11] => Eucgr.L03443
[12] => Eucgr.G01763
[13] => Eucgr.I01388
[14] => Eucgr.I01389
[15] => Eucgr.I02568
[16] => Eucgr.I01386
[17] => Eucgr.I01381
[18] => Eucgr.I02570
)
[gma] => Array
(
[0] => Glyma.10G155400
[1] => Glyma.20G232900
[2] => Glyma.05G246300
[3] => Glyma.08G178700
[4] => Glyma.15G053800
[5] => Glyma.05G116700
[6] => Glyma.08G054300
[7] => Glyma.05G195500
[8] => Glyma.08G003100
[9] => Glyma.04G207800
[10] => Glyma.06G158000
[11] => Glyma.15G060700
[12] => Glyma.18G104200
[13] => Glyma.08G311400
[14] => Glyma.13G254200
[15] => Glyma.05G199000
[16] => Glyma.08G106000
[17] => Glyma.05G149500
[18] => Glyma.08G197900
[19] => Glyma.08G106200
[20] => Glyma.08G006267
)
[ghi] => Array
(
[0] => Gohir.A11G264133
[1] => Gohir.D11G274200
[2] => Gohir.A11G264000
[3] => Gohir.D11G274100
[4] => Gohir.D02G197800
[5] => Gohir.A11G003100
[6] => Gohir.D11G002700
[7] => Gohir.A03G174600
[8] => Gohir.A12G015200
[9] => Gohir.D12G015600
[10] => Gohir.D10G107300
[11] => Gohir.A10G067900
[12] => Gohir.A05G382400
[13] => Gohir.D04G032800
[14] => Gohir.A11G058000
[15] => Gohir.D11G062200
[16] => Gohir.A12G017600
[17] => Gohir.D12G018200
[18] => Gohir.A06G169500
[19] => Gohir.D06G177200
[20] => Gohir.A13G049200
[21] => Gohir.D13G047700
[22] => Gohir.D04G165100
[23] => Gohir.D01G156300
[24] => Gohir.A01G164400
[25] => Gohir.D01G156400
[26] => Gohir.A12G194800
[27] => Gohir.D12G197200
)
[eca] => Array
(
[0] => ECA238G4171
[1] => ECA233G3392
[2] => ECA240G0103
[3] => ECA233G4817
[4] => ECA248G2477
[5] => ECA233G3159
[6] => ECA236G0460
[7] => ECA234G3918
[8] => ECA246G4936
[9] => ECA233G0605
[10] => ECA246G1973
[11] => ECA238G2250
)
[vmu] => Array
(
[0] => VMungo0720G0875
[1] => VMungo0251G0933
[2] => VMungo0540G1955
[3] => VMungo0251G3511
[4] => VMungo0331G0265
[5] => VMungo0251G0194
[6] => VMungo1309G1884
[7] => VMungo0540G1701
[8] => VMungo0251G2939
[9] => VMungo0540G0597
)
[car] => Array
(
[0] => Ca_10104_v3
[1] => Ca_17191_v3
[2] => Ca_18358_v3
[3] => Ca_17610_v3
[4] => Ca_17001_v3
[5] => Ca_00185_v3
[6] => Ca_14632_v3
[7] => Ca_16815_v3
[8] => Ca_18012_v3
[9] => Ca_19038_v3
)
[gra] => Array
(
[0] => Gorai.007G295900
[1] => Gorai.007G295700
[2] => Gorai.007G003700
[3] => Gorai.005G221100
[4] => Gorai.008G015700
[5] => Gorai.011G117700
[6] => Gorai.012G037200
[7] => Gorai.007G067000
[8] => Gorai.013G053300
[9] => Gorai.008G018500
[10] => Gorai.N008100
[11] => Gorai.012G153500
[12] => Gorai.002G193900
[13] => Gorai.002G194000
[14] => Gorai.002G193800
[15] => Gorai.008G211800
)
[col] => Array
(
[0] => COL.COLO4_13489
[1] => COL.COLO4_13495
[2] => COL.COLO4_13496
[3] => COL.COLO4_04375
[4] => COL.COLO4_08574
[5] => COL.COLO4_20745
[6] => COL.COLO4_12112
[7] => COL.COLO4_37281
[8] => COL.COLO4_17267
[9] => COL.COLO4_17268
[10] => COL.COLO4_17269
)
[lja] => Array
(
[0] => Lj5g0018333
[1] => Lj2g0027653
[2] => Lj6g0024241
[3] => Lj4g0007471
[4] => Lj4g0014215
[5] => Lj2g0012825
[6] => Lj4g0025003
[7] => Lj1g0004459
[8] => Lj1g0004545
[9] => Lj1g0006094
[10] => Lj1g0024754
[11] => Lj6g0018418
[12] => Lj6g0027071
[13] => Lj4g0008483
[14] => Lj6g0005814
[15] => Lj6g0002626
[16] => Lj4g0007390
[17] => Lj3g0011878
[18] => Lj3g0000984
[19] => Lj6g0008557
)
[ccan] => Array
(
[0] => Cc00_g15590
[1] => Cc04_g06250
[2] => Cc02_g21470
[3] => Cc00_g12090
[4] => Cc02_g20550
[5] => Cc05_g09120
[6] => Cc00_g26370
[7] => Cc02_g29320
[8] => Cc04_g05620
[9] => Cc02_g29340
[10] => Cc00_g05690
[11] => Cc02_g14740
[12] => Cc02_g16440
[13] => Cc00_g05670
[14] => Cc00_g05620
)
[lal] => Array
(
[0] => Lalb_Chr21g0310741
[1] => Lalb_Chr05g0221661
[2] => Lalb_Chr16g0387011
[3] => Lalb_Chr05g0217541
[4] => Lalb_Chr15g0090431
[5] => Lalb_Chr11g0068731
[6] => Lalb_Chr20g0122751
[7] => Lalb_Chr15g0080441
[8] => Lalb_Chr12g0202931
[9] => Lalb_Chr07g0183921
[10] => Lalb_Chr12g0205951
[11] => Lalb_Chr03g0025011
[12] => Lalb_Chr15g0090421
)
[aox] => Array
(
[0] => Aqoxy2G03296
[1] => Aqoxy3G00064
[2] => Aqoxy6G00773
[3] => Aqoxy6G00228
[4] => Aqoxy3G00674
[5] => Aqoxy6G00631
[6] => Aqoxy425s001
[7] => Aqoxy5G02973
[8] => Aqoxy3G02448
)
[psa] => Array
(
[0] => Psat6g149520
[1] => Psat4g001480
[2] => Psat7g099080
[3] => Psat7g043520
[4] => Psat5g186880
[5] => Psat1g212600
[6] => Psat5g059040
[7] => Psat7g040200
[8] => Psat7g075560
[9] => Psat7g174400
[10] => Psat7g174360
)
[bvu] => Array
(
[0] => EL10Ac4g09339
[1] => EL10Ac5g11565
[2] => EL10Ac4g09666
[3] => EL10Ac9g21024
[4] => EL10Ac9g22131
[5] => EL10Ac5g11262
[6] => EL10Ac4g09167
[7] => EL10Ac9g21426
)
[han] => Array
(
[0] => HanXRQChr14g0446451
[1] => HanXRQChr05g0142641
[2] => HanXRQChr13g0420761
[3] => HanXRQChr03g0067581
[4] => HanXRQChr01g0018901
[5] => HanXRQChr08g0227101
[6] => HanXRQChr15g0469241
[7] => HanXRQChr13g0387351
[8] => HanXRQChr10g0291231
[9] => HanXRQChr06g0183731
[10] => HanXRQChr08g0227111
[11] => HanXRQChr15g0472011
[12] => HanXRQChr15g0472021
)
[ama] => Array
(
[0] => MSTRG.8132
[1] => MSTRG.9304
[2] => MSTRG.4580
[3] => MSTRG.2774
[4] => MSTRG.12835
[5] => MSTRG.16638
[6] => MSTRG.20250
[7] => MSTRG.22823
[8] => MSTRG.16887
)
[mtr] => Array
(
[0] => Medtr1g082750
[1] => Medtr8g107280
[2] => Medtr4g094205
[3] => Medtr8g094740
[4] => Medtr3g048950
[5] => Medtr2g010180
[6] => Medtr3g096980
[7] => Medtr8g095600
[8] => Medtr8g097220
[9] => Medtr8g080870
[10] => Medtr8g080840
[11] => Medtr8g080890
[12] => Medtr8g080880
[13] => Medtr4g074030
)
[cqu] => Array
(
[0] => AUR62000842
[1] => AUR62005131
[2] => AUR62010143
[3] => AUR62042937
[4] => AUR62025790
[5] => AUR62013138
[6] => AUR62000552
[7] => AUR62006904
[8] => AUR62004905
[9] => AUR62030916
[10] => AUR62027076
[11] => AUR62032754
[12] => AUR62032200
[13] => AUR62010079
[14] => AUR62036969
[15] => AUR62013073
[16] => AUR62000988
[17] => AUR62000989
[18] => AUR62004971
[19] => AUR62004972
)
[vma] => Array
(
[0] => vmacro19630
[1] => vmacro19937
[2] => vmacro17782
[3] => vmacro17783
[4] => vmacro18673
[5] => vmacro01903
[6] => vmacro19593
[7] => vmacro12422
[8] => vmacro12423
[9] => vmacro19100
[10] => vmacro02256
[11] => vmacro19250
[12] => vmacro17375
)
[pso] => Array
(
[0] => PSO170G5899
[1] => PSO017G1837
[2] => PSO781G0108
[3] => PSO541G2392
[4] => PSO478G3507
[5] => PSO170G4632
[6] => PSO528G0179
[7] => PSO478G1473
[8] => PSO017G2524
[9] => PSO700G0067
[10] => PSO761G0240
[11] => PSO017G0101
[12] => PSO478G5039
[13] => PSO210G4012
[14] => PSO210G1458
[15] => PSO210G2448
[16] => PSO108G0001
[17] => PSO675G3189
[18] => PSO210G5656
[19] => PSO135G0202
[20] => PSO210G7078
[21] => PSO724G0677
[22] => PSO386G0109
)
[sed] => Array
(
[0] => Sed0003731
[1] => Sed0010693
[2] => Sed0028182
[3] => Sed0026081
[4] => Sed0003330
[5] => Sed0006625
[6] => Sed0004824
[7] => Sed0008875
[8] => Sed0027530
[9] => Sed0012086
[10] => Sed0022074
)
[lsa] => Array
(
[0] => Lsat_1_v5_gn_2_64320
[1] => Lsat_1_v5_gn_8_301
[2] => Lsat_1_v5_gn_9_117041
[3] => Lsat_1_v5_gn_5_69021
[4] => Lsat_1_v5_gn_1_81601
[5] => Lsat_1_v5_gn_8_31840
[6] => Lsat_1_v5_gn_5_110881
[7] => Lsat_1_v5_gn_7_83060
[8] => Lsat_1_v5_gn_5_9480
[9] => Lsat_1_v5_gn_3_45801
[10] => Lsat_1_v5_gn_3_45840
[11] => Lsat_1_v5_gn_8_126020
[12] => Lsat_1_v5_gn_3_45780
)
[cpa] => Array
(
[0] => Cpa.g.sc48.34
[1] => Cpa.g.sc3.396
[2] => Cpa.g.sc139.29
[3] => Cpa.g.sc42.43
[4] => Cpa.g.sc42.44
[5] => Cpa.g.sc13.197
[6] => Cpa.g.sc37.181
[7] => Cpa.g.sc37.38
[8] => Cpa.g.sc20.48
)
[sun] => Array
(
[0] => Hund21815
[1] => Hund02255
[2] => Hund00067
[3] => Hund07212
[4] => Hund07738
[5] => Hund00402
[6] => Hund02520
[7] => Hund02519
[8] => Hund06412
)
[hma] => Array
(
[0] => Hma1.2p1_1362F.1_g278280
[1] => Hma1.2p1_0669F.1_g200140
[2] => Hma1.2p1_0522F.1_g171690
[3] => Hma1.2p1_2302F.1_g319310
[4] => Hma1.2p1_0134F.1_g061460
[5] => Hma1.2p1_0178F.1_g078230
[6] => Hma1.2p1_3358F.1_g335550
[7] => Hma1.2p1_1333F.1_g276230
[8] => Hma1.2p1_1242F.1_g269870
[9] => Hma1.2p1_0023F.1_g015520
)
[tpr] => Array
(
[0] => TPR.G6073
[1] => TPR.G1418
[2] => TPR.G34521
[3] => TPR.G32630
[4] => TPR.G13547
[5] => TPR.G12739
[6] => TPR.G14752
[7] => TPR.G26565
[8] => TPR.G26569
[9] => TPR.G11956
[10] => TPR.G26564
[11] => TPR.G13221
[12] => TPR.G37395
)
[csa] => Array
(
[0] => CsaV3_1G039020
[1] => CsaV3_1G039030
[2] => CsaV3_1G004380
[3] => CsaV3_7G006560
[4] => CsaV3_4G030810
[5] => CsaV3_7G007390
[6] => CsaV3_6G037950
[7] => CsaV3_3G003620
[8] => CsaV3_2G015800
[9] => CsaV3_2G015820
[10] => CsaV3_7G000850
[11] => CsaV3_2G015790
[12] => CsaV3_7G000860
)
[sci] => Array
(
[0] => Sc09g0003230
[1] => Sc12g0007230
[2] => Sc18g0006830
[3] => Sc09g0002170
[4] => Sc21g0004390
[5] => Sc04g0000020
[6] => Sc04g0000060
[7] => Sc08g0003140
[8] => Sc18g0006620
)
[amhyb] => Array
(
[0] => Ah.06g189220
[1] => Ah.10g032670
[2] => Ah.01g022290
[3] => Ah.02g117670
[4] => Ah.01g007260
[5] => Ah.01g016080
[6] => Ah.01g024200
[7] => Ah.04g162350
[8] => Ah.06g192540
[9] => Ah.11g047030
)
[sbo] => Array
(
[0] => SalBow6G6487
[1] => SalBow1G1366
[2] => SalBow5G0105
[3] => SalBow7G4591
[4] => SalBow6G5084
[5] => SalBow7G2149
[6] => SalBow6G5025
[7] => SalBow6G2456
)
[egut] => Array
(
[0] => Migut.F01717
[1] => Migut.B00605
[2] => Migut.N01072
[3] => Migut.D01540
[4] => Migut.H00836
[5] => Migut.H02113
[6] => Migut.B00517
[7] => Migut.I00655
[8] => Migut.B00113
[9] => Migut.B00114
)
[nta] => Array
(
[0] => Nitab4.5_0000327g0020
[1] => Nitab4.5_0005818g0010
[2] => Nitab4.5_0003401g0010
[3] => Nitab4.5_0000294g0010
[4] => Nitab4.5_0004556g0020
[5] => Nitab4.5_0002067g0060
[6] => Nitab4.5_0000120g0190
[7] => Nitab4.5_0001277g0070
[8] => Nitab4.5_0006854g0060
[9] => Nitab4.5_0002335g0070
[10] => Nitab4.5_0010352g0080
[11] => Nitab4.5_0009020g0080
[12] => Nitab4.5_0010352g0070
[13] => Nitab4.5_0011048g0010
[14] => Nitab4.5_0002027g0090
[15] => Nitab4.5_0000976g0230
[16] => Nitab4.5_0002679g0030
[17] => Nitab4.5_0006854g0050
[18] => Nitab4.5_0001402g0110
[19] => Nitab4.5_0005215g0030
[20] => Nitab4.5_0000283g0050
[21] => Nitab4.5_0000980g0060
[22] => Nitab4.5_0000615g0030
)
[oeu] => Array
(
[0] => Oeu000798.1
[1] => Oeu026279.1
[2] => Oeu019231.2
[3] => Oeu046164.2
[4] => Oeu000249.3
[5] => Oeu000793.1
[6] => Oeu000804.1
[7] => Oeu042318.2
[8] => Oeu059886.1
[9] => Oeu032122.1
[10] => Oeu012857.1
[11] => Oeu036712.1
[12] => Oeu060422.1
)
[pax] => Array
(
[0] => Peaxi162Scf00471g00004
[1] => Peaxi162Scf00003g03547
[2] => Peaxi162Scf00683g00463
[3] => Peaxi162Scf00035g03126
[4] => Peaxi162Scf00016g03464
[5] => Peaxi162Scf00152g00738
[6] => Peaxi162Scf00299g00236
[7] => Peaxi162Scf00314g00734
[8] => Peaxi162Scf00684g00028
[9] => Peaxi162Scf00217g00621
[10] => Peaxi162Scf00207g00211
[11] => Peaxi162Scf00362g00957
[12] => Peaxi162Scf00362g00956
[13] => Peaxi162Scf00684g00029
)
[sas] => Array
(
[0] => SGA_v2.0_scaffold2G01355
[1] => SGA_v2.0_scaffold36G14382
[2] => SGA_v2.0_scaffold45G17317
[3] => SGA_v2.0_scaffold4G02113
[4] => SGA_v2.0_scaffold20G08966
[5] => SGA_v2.0_scaffold342G49396
[6] => SGA_v2.0_scaffold58G20423
[7] => SGA_v2.0_scaffold58G20422
[8] => SGA_v2.0_scaffold5G02813
)
[cla] => Array
(
[0] => ClCG03G016900
[1] => ClCG09G015490
[2] => ClCG06G014290
[3] => ClCG04G001740
[4] => ClCG09G016410
[5] => ClCG09G022260
[6] => ClCG00G001670
[7] => ClCG10G003620
[8] => ClCG00G000370
[9] => ClCG02G004260
[10] => ClCG02G004250
[11] => ClCG02G011630
)
[tha] => Array
(
[0] => THA.LOC104820921
[1] => THA.LOC104820350
[2] => THA.LOC104799946
[3] => THA.LOC104804452
[4] => THA.LOC104819480
[5] => THA.LOC104799673
[6] => THA.LOC104824040
[7] => THA.LOC104805240
[8] => THA.LOC104804337
)
[cme] => Array
(
[0] => MELO3C015328.2
[1] => MELO3C015329.2
[2] => MELO3C018637.2
[3] => MELO3C017360.2
[4] => MELO3C018563.2
[5] => MELO3C008949.2
[6] => MELO3C014457.2
[7] => MELO3C014033.2
[8] => MELO3C020792.2
[9] => MELO3C013372.2
[10] => MELO3C020793.2
[11] => MELO3C013371.2
[12] => MELO3C020794.2
)
[dca] => Array
(
[0] => DCAR_017063
[1] => DCAR_029426
[2] => DCAR_014505
[3] => DCAR_021862
[4] => DCAR_009614
[5] => DCAR_019960
[6] => DCAR_013291
[7] => DCAR_029282
[8] => DCAR_016327
[9] => DCAR_005955
[10] => DCAR_016328
[11] => DCAR_003706
[12] => DCAR_003708
[13] => DCAR_005658
[14] => DCAR_003244
)
[esa] => Array
(
[0] => Thhalv10007679m.g
[1] => Thhalv10020361m.g
[2] => Thhalv10013019m.g
[3] => Thhalv10003835m.g
[4] => Thhalv10012940m.g
[5] => Thhalv10012903m.g
[6] => Thhalv10025156m.g
)
[aar] => Array
(
[0] => Aa31sc136G90
[1] => Aa31LG8G4830
[2] => Aa31LG3G17590
[3] => Aa31LG1G17460
[4] => Aa31LG2G6650
[5] => Aa31LG3G19010
[6] => Aa31LG1G5760
[7] => Aa31LG2G15660
)
[ach] => Array
(
[0] => Actinidia19796
[1] => Actinidia28137
[2] => Actinidia13183
[3] => Actinidia35128
[4] => Actinidia28053
[5] => Actinidia18897
[6] => Actinidia24639
[7] => Actinidia24969
[8] => Actinidia13001
[9] => Actinidia12826
[10] => Actinidia02414
[11] => Actinidia25415
[12] => Actinidia16517
[13] => Actinidia00326
[14] => Actinidia00601
[15] => Actinidia18282
[16] => Actinidia25502
[17] => Actinidia15940
[18] => Actinidia13000
[19] => Actinidia24970
)
[bca] => Array
(
[0] => BcaC07g41912
[1] => BcaB06g25863
[2] => BcaC05g28730
[3] => BcaC01g03719
[4] => BcaB07g33744
[5] => BcaC08g43058
[6] => BcaB08g37207
[7] => BcaB08g37206
[8] => BcaB04g18975
[9] => BcaB08g36561
[10] => BcaB07g30635
[11] => BcaC04g21423
[12] => BcaC01g02682
[13] => BcaB07g29744
[14] => BcaC06g32446
[15] => BcaC06g32445
[16] => BcaC03g18264
[17] => BcaC03g16959
[18] => BcaNung00648
)
[ath] => Array
(
[0] => AT1G08980
[1] => AT3G17970
[2] => AT5G09420
[3] => AT3G25660
[4] => AT5G64440
[5] => AT5G07360
[6] => AT4G34880
)
[bol] => Array
(
[0] => BolC8t52500H
[1] => BolC5t33567H
[2] => BolC3t17222H
[3] => BolC6t35435H
[4] => BolC9t59555H
[5] => BolC3t18443H
[6] => BolC9t56049H
[7] => BolC9t59694H
[8] => BolC2t12406H
[9] => BolC2t10958H
)
[spa] => Array
(
[0] => Sp1g07590
[1] => Sp3g16090
[2] => Sp6g33910
[3] => Sp1g35520
[4] => Sp2g14920
[5] => Sp2g27530
[6] => Sp6g35510
)
[bna] => Array
(
[0] => A09p65640
[1] => C08p49720
[2] => A05p31840
[3] => C05p48330
[4] => A03p40480
[5] => C03p49320
[6] => A06p04360
[7] => C06p03170
[8] => A10p27860
[9] => C09p67960
[10] => A06p31100
[11] => C03p61820
[12] => A09p24920
[13] => C09p31950
[14] => A02p43320
[15] => A10p29110
[16] => C09p69500
[17] => C02p63380
[18] => A02p31290
[19] => C02p48660
[20] => C01p03920
[21] => A01p03640
)
[bra] => Array
(
[0] => BraA09t41908Z
[1] => BraA05t22016Z
[2] => BraA03t13206Z
[3] => BraA06t23640Z
[4] => BraA10t44835Z
[5] => BraA06t26053Z
[6] => BraA09t38080Z
[7] => BraA02t09258Z
[8] => BraA10t44960Z
[9] => BraA10t44834Z
[10] => BraA02t08133Z
[11] => BraA01t00349Z
)
[aly] => Array
(
[0] => AL1G19410
[1] => AL3G31130
[2] => AL6G19810
[3] => AL5G14200
[4] => AL8G41810
[5] => AL6G17660
[6] => AL7G16330
)
[can] => Array
(
[0] => CAN.G509.7
[1] => CAN.G843.55
[2] => CAN.G1.39
[3] => CAN.G504.54
[4] => CAN.G504.51
[5] => CAN.G504.52
[6] => CAN.G504.53
[7] => CAN.G504.50
[8] => CAN.G1191.9
[9] => CAN.G1008.41
[10] => CAN.G1089.9
[11] => CAN.G439.21
[12] => CAN.G439.23
[13] => CAN.G439.25
[14] => CAN.G2368.1
[15] => CAN.G439.22
[16] => CAN.G1008.42
[17] => CAN.G588.33
[18] => CAN.G439.24
)
[cru] => Array
(
[0] => Carub.0001s0829
[1] => Carub.0001s0830
[2] => Carub.0003s1769
[3] => Carub.0006s0797
[4] => Carub.0005s0348
[5] => Carub.0008s2524
[6] => Carub.0006s0633
[7] => Carub.0007s0542
[8] => Carub.0007s0541
)
[atr] => Array
(
[0] => ATR0626G200
[1] => ATR0564G362
[2] => ATR0782G133
[3] => ATR0584G074
[4] => ATR0782G125
[5] => ATR1096G083
[6] => ATR0800G073
[7] => ATR0582G258
[8] => ATR0810G070
)
[stu] => Array
(
[0] => PGSC0003DMG400043451
[1] => PGSC0003DMG400005752
[2] => PGSC0003DMG400016669
[3] => PGSC0003DMG400008518
[4] => PGSC0003DMG401021239
[5] => PGSC0003DMG402003118
[6] => PGSC0003DMG400003120
[7] => PGSC0003DMG400014230
[8] => PGSC0003DMG400001625
[9] => PGSC0003DMG400018706
[10] => PGSC0003DMG400002019
[11] => PGSC0003DMG400001626
)
[lonja] => Array
(
[0] => Lj5A559T31
[1] => Lj5A239G80
[2] => Lj5C552T10
[3] => Lj5A560T9
[4] => Lj5C158T11
[5] => Lj5C566G6
[6] => Lj5C566G1
[7] => Lj2C608G9
[8] => Lj5A552T18
[9] => Lj9A342T54
[10] => Lj5A225G70
[11] => Lj5A183G94
[12] => Lj5A183T92
[13] => Lj1A587G24
[14] => Lj9A488T69
)
[vpl] => Array
(
[0] => HPP92_013681
[1] => HPP92_013662
[2] => HPP92_004126
[3] => HPP92_016785
[4] => HPP92_004400
[5] => HPP92_027806
[6] => HPP92_016787
[7] => HPP92_006437
[8] => HPP92_017097
[9] => HPP92_017107
[10] => HPP92_025555
[11] => HPP92_004989
[12] => HPP92_004986
)
[fve] => Array
(
[0] => FvH4_6g05640
[1] => FvH4_5g17380
[2] => FvH4_1g25540
[3] => FvH4_2g11120
[4] => FvH4_6g37630
[5] => FvH4_5g09971
[6] => FvH4_5g09970
[7] => FvH4_2g01722
[8] => FvH4_2g01720
[9] => FvH4_2g01710
[10] => FvH4_2g01800
)
[spe] => Array
(
[0] => Sopen10g035550
[1] => Sopen03g037650
[2] => Sopen10g017560
[3] => Sopen12g027140
[4] => Sopen01g048710
[5] => Sopen01g048720
[6] => Sopen10g003740
[7] => Sopen01g048700
[8] => Sopen01g048730
[9] => Sopen03g036930
[10] => Sopen06g025970
[11] => Sopen01g053280
[12] => Sopen11g029240
[13] => Sopen01g053270
)
[sly] => Array
(
[0] => Solyc10g086170.1
[1] => Solyc03g118690.4
[2] => Solyc10g047300.2
[3] => Solyc01g106340.3
[4] => Solyc10g007840.3
[5] => Solyc01g106330.3
[6] => Solyc01g106360.3
[7] => Solyc01g106350.4
[8] => Solyc03g118030.3
[9] => Solyc01g111220.3
[10] => Solyc11g071550.2
[11] => Solyc01g111210.3
)
[chi] => Array
(
[0] => CARHR008880
[1] => CARHR093290
[2] => CARHR203980
[3] => CARHR292250
[4] => CARHR260190
[5] => CARHR288520
[6] => CARHR278410
[7] => CARHR205790
[8] => CARHR004760
)
[tca] => Array
(
[0] => Thecc.05G305200
[1] => Thecc.05G305100
[2] => Thecc.03G056700
[3] => Thecc.02G138200
[4] => Thecc.01G141900
[5] => Thecc.02G124600
[6] => Thecc.10G113900
[7] => Thecc.03G143100
[8] => Thecc.02G066100
[9] => Thecc.02G065900
[10] => Thecc.05G242200
)
[osa] => Array
(
[0] => Os04g0118100
[1] => Os04g0117900
[2] => Os03g0707900
[3] => Os02g0754500
[4] => Os12g0169000
[5] => Os04g0643200
[6] => Os11g0170000
[7] => Os04g0102700
[8] => Os11g0536800
[9] => Os04g0184100
[10] => Os06g0271300
[11] => Os04g0183500
[12] => Os10g0155400
[13] => Os04g0184801
)
[din] => Array
(
[0] => Dinv40274
[1] => Dinv04127
[2] => Dinv04131
[3] => Dinv24185
[4] => Dinv09029
[5] => Dinv04126
[6] => Dinv40958
[7] => Dinv06275
[8] => Dinv08963
[9] => Dinv04962
[10] => Dinv41969
[11] => Dinv42666
[12] => Dinv04961
[13] => Dinv39525
[14] => Dinv07082
)
[sgi] => Array
(
[0] => SEGI_22675
[1] => SEGI_27008
[2] => SEGI_08361
[3] => SEGI_16707
[4] => SEGI_40749
[5] => SEGI_25123
[6] => SEGI_24729
[7] => SEGI_06909
[8] => SEGI_17157
[9] => SEGI_35733
[10] => SEGI_26808
[11] => SEGI_34389
[12] => SEGI_28744
[13] => SEGI_03091
[14] => SEGI_29159
[15] => SEGI_28756
[16] => SEGI_05343
[17] => SEGI_26009
[18] => SEGI_08438
[19] => SEGI_21767
)
[ugi] => Array
(
[0] => unitig_899.g15039
[1] => unitig_27.g24923
[2] => unitig_8.g3412
[3] => unitig_699.g19060
[4] => unitig_899.g14644
[5] => unitig_8.g3049
[6] => unitig_22.g6850
)
[ppa] => Array
(
[0] => Pp3c7_6470
[1] => Pp3c21_15890
[2] => Pp3c19_12600
[3] => Pp3c22_23080
[4] => Pp3c20_10030
[5] => Pp3c21_15880
[6] => Pp3c11_9200
[7] => Pp3c26_13660
[8] => Pp3c3_2980
[9] => Pp3c7_18330
[10] => Pp3c16_16670
[11] => Pp3c27_1950
[12] => Pp3c23_9920
[13] => Pp3s32_288
[14] => Pp3c10_23960
[15] => Pp3c17_7850
[16] => Pp3c4_17250
)
[pvu] => Array
(
[0] => Phvul.007G180900
[1] => Phvul.002G330000
[2] => Phvul.006G206200
[3] => Phvul.002G209800
[4] => Phvul.002G275700
[5] => Phvul.006G036200
[6] => Phvul.009G152300
[7] => Phvul.006G199100
[8] => Phvul.002G280000
[9] => Phvul.L003946
)
[mpo] => Array
(
[0] => Mapoly0084s0045
[1] => Mapoly0084s0044
[2] => Mapoly0001s0333
[3] => Mapoly0056s0114
[4] => Mapoly0029s0077
[5] => Mapoly0080s0043
)
[mbi] => Array
(
[0] => MBI05_g39043_MAGBIO
[1] => MBI12_g33080_MAGBIO
[2] => MBI19_g17587_MAGBIO
[3] => MBI19_g17595_MAGBIO
[4] => MBI05_g35447_MAGBIO
[5] => MBI16_g44751_MAGBIO
[6] => MBI07_g42016_MAGBIO
[7] => MBI09_g15954_MAGBIO
[8] => MBI09_g15952_MAGBIO
)
[zma] => Array
(
[0] => Zm00001eb109510
[1] => Zm00001eb255310
[2] => Zm00001eb054500
[3] => Zm00001eb216600
[4] => Zm00001eb091740
[5] => Zm00001eb407860
[6] => Zm00001eb068770
[7] => Zm00001eb418940
[8] => Zm00001eb197940
)
[cde] => Array
(
[0] => CDE11G0307
[1] => CDE10G0845
[2] => CDE05G3325
[3] => CDE10G0428
[4] => CDE05G3011
[5] => CDE04G3774
[6] => CDE07G0825
[7] => CDE05G1658
)
[smo] => Array
(
[0] => SMO338G0018
[1] => SMO117G0062
[2] => SMO304G0067
[3] => SMO118G0181
[4] => SMO347G0405
[5] => SMO137G0127
[6] => SMO367G0238
[7] => SMO134G0263
[8] => SMO271G0054
)
[shi] => Array
(
[0] => SHI19087
)
[aag] => Array
(
[0] => AagrBONN_evm.TU.Sc2ySwM_344.2643
[1] => AagrBONN_evm.TU.Sc2ySwM_117.3185
[2] => AagrBONN_evm.TU.Sc2ySwM_368.1898
[3] => AagrBONN_evm.TU.Sc2ySwM_362.1093
[4] => AagrBONN_evm.TU.Sc2ySwM_340.411
[5] => AagrBONN_evm.TU.Sc2ySwM_228.2736
[6] => AagrBONN_evm.TU.Sc2ySwM_368.1236
[7] => AagrBONN_evm.TU.Sc2ySwM_368.1238__1239
)
[cbr] => Array
(
[0] => CBR_g36926
[1] => CBR_g12438
[2] => CBR_g41054
[3] => CBR_g36483
)
[cre] => Array
(
[0] => Cre11.g467630
[1] => Cre08.g360100
[2] => Cre10.g439400
[3] => Cre02.g114850
[4] => Cre02.g103350
)
[pco] => Array
(
[0] => PRCOL_00001088
[1] => PRCOL_00000136
[2] => PRCOL_00000262
[3] => PRCOL_00006355
[4] => PRCOL_00005593
)
[mco] => Array
(
[0] => MCO09G683
[1] => MCO02G388
[2] => MCO01G356
[3] => MCO11G436
)
)
[gene_id] => MCO11G436
[gf_types_information] => Array
(
[HOMFAM] => Array
(
[id] => HOMFAM
[name] => Homologous gene family
[gene_type] => coding
[parent_id] =>
[ancestry] => homology
)
[ORTHOFAM] => Array
(
[id] => ORTHOFAM
[name] => Orthologous gene family
[gene_type] => coding
[parent_id] => HOMFAM
[ancestry] => orthology
)
)
[gf_types_configuration] => Array
(
[HOMFAM] => Array
(
[order] => 1
[show_parentless_subfamilies] => false
[show_table] => true
[show_orphan] =>
)
[ORTHOFAM] => Array
(
[order] => 2
[show_parentless_subfamilies] => false
[show_table] => true
[show_orphan] =>
)
)
[all_species] => Array
(
[acertr] => Array
(
[species] => acertr
[common_name] => Acer truncatum
[tax_id] => 47965
[version] => v2.0
)
[ach] => Array
(
[species] => ach
[common_name] => Actinidia chinensis
[tax_id] => 3625
[version] => V3.0
)
[aar] => Array
(
[species] => aar
[common_name] => Aethionema arabicum
[tax_id] => 228871
[version] => v3.1
)
[amhyb] => Array
(
[species] => amhyb
[common_name] => Amaranthus hybridus
[tax_id] => 3565
[version] => v1.0
)
[atr] => Array
(
[species] => atr
[common_name] => Amborella trichopoda
[tax_id] => 13333
[version] => JGI v1.0
)
[aag] => Array
(
[species] => aag
[common_name] => Anthoceros agrestis
[tax_id] => 41834
[version] => v1.1
)
[aox] => Array
(
[species] => aox
[common_name] => Aquilegia oxysepala
[tax_id] => 432649
[version] => v1.0
)
[aly] => Array
(
[species] => aly
[common_name] => Arabidopsis lyrata
[tax_id] => 59689
[version] => JGI v2.1
)
[ath] => Array
(
[species] => ath
[common_name] => Arabidopsis thaliana
[tax_id] => 3702
[version] => Araport11
)
[arhy] => Array
(
[species] => arhy
[common_name] => Arachis hypogaea
[tax_id] => 3818
[version] => v1.0
)
[ama] => Array
(
[species] => ama
[common_name] => Avicennia marina
[tax_id] => 82927
[version] => v1.1 20200527
)
[bvu] => Array
(
[species] => bvu
[common_name] => Beta vulgaris
[tax_id] => 161934
[version] => EL10_1.0
)
[bca] => Array
(
[species] => bca
[common_name] => Brassica carinata
[tax_id] => 52824
[version] => V1.0
)
[bna] => Array
(
[species] => bna
[common_name] => Brassica napus
[tax_id] => 3708
[version] => v2.0
)
[bol] => Array
(
[species] => bol
[common_name] => Brassica oleracea
[tax_id] => 109376
[version] => v1.0
)
[bra] => Array
(
[species] => bra
[common_name] => Brassica rapa
[tax_id] => 3711
[version] => v1.0
)
[camsi] => Array
(
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[tax_id] => 542762
[version] => CSS_ChrLev_20200506
)
[cansat] => Array
(
[species] => cansat
[common_name] => Cannabis sativa
[tax_id] => 3483
[version] => cs10
)
[cru] => Array
(
[species] => cru
[common_name] => Capsella rubella
[tax_id] => 81985
[version] => JGI v1.1
)
[can] => Array
(
[species] => can
[common_name] => Capsicum annuum
[tax_id] => 4072
[version] => Pepper Genome v2.0
)
[chi] => Array
(
[species] => chi
[common_name] => Cardamine hirsuta
[tax_id] => 50463
[version] => v1.0
)
[cpa] => Array
(
[species] => cpa
[common_name] => Carica papaya
[tax_id] => 3649
[version] => JGI ASGPB0.4
)
[cfa] => Array
(
[species] => cfa
[common_name] => Carpinus fangiana
[tax_id] => 176857
[version] => v1.0
)
[cil] => Array
(
[species] => cil
[common_name] => Carya illinoinensis
[tax_id] => 32201
[version] => v1.1
)
[cde] => Array
(
[species] => cde
[common_name] => Ceratophyllum demersum
[tax_id] => 4428
[version] => v1.0
)
[cbr] => Array
(
[species] => cbr
[common_name] => Chara braunii
[tax_id] => 69332
[version] => Cbr1.0
)
[cqu] => Array
(
[species] => cqu
[common_name] => Chenopodium quinoa
[tax_id] => 63459
[version] => KAUST v1.0
)
[cre] => Array
(
[species] => cre
[common_name] => Chlamydomonas reinhardtii
[tax_id] => 3055
[version] => JGI v5.5
)
[car] => Array
(
[species] => car
[common_name] => Cicer arietinum L.
[tax_id] => 3827
[version] => v3.0
)
[cla] => Array
(
[species] => cla
[common_name] => Citrullus lanatus
[tax_id] => 3654
[version] => WCG v2.0
)
[ccl] => Array
(
[species] => ccl
[common_name] => Citrus clementina
[tax_id] => 85681
[version] => JGI v1.0
)
[ccan] => Array
(
[species] => ccan
[common_name] => Coffea canephora
[tax_id] => 49390
[version] => Coffee Genome Hub v1
)
[col] => Array
(
[species] => col
[common_name] => Corchorus olitorius
[tax_id] => 93759
[version] => GenBank v1.0
)
[cav] => Array
(
[species] => cav
[common_name] => Corylus avellana
[tax_id] => 13451
[version] => v1.0
)
[cme] => Array
(
[species] => cme
[common_name] => Cucumis melo
[tax_id] => 3656
[version] => Melonomics v3.6.1
)
[csa] => Array
(
[species] => csa
[common_name] => Cucumis sativus L.
[tax_id] => 3659
[version] => v3.0
)
[dca] => Array
(
[species] => dca
[common_name] => Daucus carota
[tax_id] => 4039
[version] => JGI v2.0
)
[din] => Array
(
[species] => din
[common_name] => Davidia involucrata
[tax_id] => 16924
[version] => v1.0
)
[dzi] => Array
(
[species] => dzi
[common_name] => Durio zibethinus
[tax_id] => 66656
[version] => Duzib1.0
)
[eca] => Array
(
[species] => eca
[common_name] => Erigeron canadensis
[tax_id] => 72917
[version] => V1.0
)
[egut] => Array
(
[species] => egut
[common_name] => Erythranthe guttata
[tax_id] => 4155
[version] => v2.0
)
[egr] => Array
(
[species] => egr
[common_name] => Eucalyptus grandis
[tax_id] => 71139
[version] => v2.0
)
[esa] => Array
(
[species] => esa
[common_name] => Eutrema salsugineum
[tax_id] => 72664
[version] => v1.0
)
[fve] => Array
(
[species] => fve
[common_name] => Fragaria vesca
[tax_id] => 57918
[version] => V4.0.a2
)
[fan] => Array
(
[species] => fan
[common_name] => Fragaria x ananassa
[tax_id] => 3747
[version] => V1.0.a1
)
[gma] => Array
(
[species] => gma
[common_name] => Glycine max
[tax_id] => 3847
[version] => JGI Wm82.a4.v1
)
[ghi] => Array
(
[species] => ghi
[common_name] => Gossypium hirsutum
[tax_id] => 3635
[version] => v2.1
)
[gra] => Array
(
[species] => gra
[common_name] => Gossypium raimondii
[tax_id] => 29730
[version] => v2.1
)
[han] => Array
(
[species] => han
[common_name] => Helianthus annuus
[tax_id] => 4232
[version] => r1.2
)
[hma] => Array
(
[species] => hma
[common_name] => Hydrangea macrophylla
[tax_id] => 23110
[version] => v2.1
)
[lsa] => Array
(
[species] => lsa
[common_name] => Lactuca sativa
[tax_id] => 4236
[version] => v8.0
)
[lonja] => Array
(
[species] => lonja
[common_name] => Lonicera japonica
[tax_id] => 105884
[version] => v1.0
)
[lja] => Array
(
[species] => lja
[common_name] => Lotus japonicus
[tax_id] => 34305
[version] => Lj1.0v1
)
[lal] => Array
(
[species] => lal
[common_name] => Lupinus albus
[tax_id] => 3870
[version] => v1.0
)
[mbi] => Array
(
[species] => mbi
[common_name] => Magnolia biondii
[tax_id] => 86725
[version] => v1.0
)
[mdo] => Array
(
[species] => mdo
[common_name] => Malus domestica
[tax_id] => 3750
[version] => GDDH13 v1.1
)
[mes] => Array
(
[species] => mes
[common_name] => Manihot esculenta
[tax_id] => 3983
[version] => v8.1
)
[mpo] => Array
(
[species] => mpo
[common_name] => Marchantia polymorpha
[tax_id] => 3197
[version] => JGI v3.1
)
[mtr] => Array
(
[species] => mtr
[common_name] => Medicago truncatula
[tax_id] => 3880
[version] => JGI Mt4.0v1
)
[mco] => Array
(
[species] => mco
[common_name] => Micromonas commoda
[tax_id] => 296587
[version] => JGI v3.0
)
[nnu] => Array
(
[species] => nnu
[common_name] => Nelumbo nucifera
[tax_id] => 4432
[version] => v2.0
)
[nta] => Array
(
[species] => nta
[common_name] => Nicotiana tabacum
[tax_id] => 4097
[version] => Edwards2017
)
[oeu] => Array
(
[species] => oeu
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[version] => IRGSP-1.0-2021-05-10
)
[pso] => Array
(
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[common_name] => Papaver somniferum
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[version] => ASM357369v1
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[pax] => Array
(
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[common_name] => Petunia axillaris
[tax_id] => 33119
[version] => Sol Genomics v1.6.2
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[pvu] => Array
(
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[ppa] => Array
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[ptr] => Array
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[pco] => Array
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[pgr] => Array
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[version] => ASM765513v2
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[qlo] => Array
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[common_name] => Quercus lobata
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[rsi] => Array
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[rch] => Array
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[version] => v2.0
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[version] => v1.0
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(
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(
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[smo] => Array
(
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[common_name] => Selaginella moellendorffii
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[sun] => Array
(
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[common_name] => Selenicereus undatus
[tax_id] => 176265
[version] => v1.0
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[sgi] => Array
(
[species] => sgi
[common_name] => Sequoiadendron giganteum
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[version] => V2.0
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[sci] => Array
(
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[common_name] => Simmondsia chinensis
[tax_id] => 3999
[version] => sc1
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(
[species] => sly
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[version] => ITAG4.0
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[spe] => Array
(
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[version] => V2.0
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[stu] => Array
(
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[version] => JGI v4.03
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(
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[version] => v2.02
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[tha] => Array
(
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[version] => RefSeq v1
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(
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[version] => V2.1
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(
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[twi] => Array
(
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[version] => ASM1340144v1
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(
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[version] => v1.0
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(
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[version] => v1.1F
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(
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(
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[version] => Elo Vpla-A Principal v1.0
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[vmu] => Array
(
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[version] => ASM1342719v1
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[vvi] => Array
(
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[tax_id] => 29760
[version] => Genoscope.12x
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[zma] => Array
(
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[version] => NAM v5.0
)
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[allow_async_use] => 1
[sidebar_information] => Array
(
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)
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[RequestHandler] => Array
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[_Collection:protected] => ComponentCollection Object
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[settings] => Array
(
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[_componentMap:protected] => Array
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*RECURSION*
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[_componentMap:protected] => Array
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[_Collection:protected] => ComponentCollection Object
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(
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[_componentMap:protected] => Array
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[_componentMap:protected] => Array
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[Sequence] => Array
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(
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[program_paths:ExternalProgramsComponent:private] => Array
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[cluster_settings] => Array
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[bash] => Array
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[cluster_settings] => Array
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[modules] => Array
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[command] =>
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[modules] => Array
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[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
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[mafft] => Array
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[modules] => Array
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[phyml] => Array
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[cluster_settings] => Array
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[modules] => Array
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[fasttree] => Array
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[modules] => Array
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[raxml] => Array
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[modules] => Array
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[iqtree] => Array
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[modules] => Array
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[_Collection:protected] => ComponentCollection Object
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[settings] => Array
(
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[_componentMap:protected] => Array
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[FastaUtils] => Array
(
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)
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[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
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[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
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[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
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[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
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[_componentMap:protected] => Array
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[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
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*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
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[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
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[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
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[Sequence] => SequenceComponent Object
(
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[components] => Array
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[1] => Coordinates
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[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
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[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
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[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
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[controller] => AnalysisController Object
*RECURSION*
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[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
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[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
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[isAjax] =>
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[data] => Array
(
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[query] => Array
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[webroot] => /plaza.dev/_dev_instances/feedback/
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[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
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[patch] => Array
(
[env] => REQUEST_METHOD
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[requested] => Array
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[_input:protected] =>
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[response] => CakeResponse Object
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[swf] => application/x-shockwave-flash
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[midi] => audio/midi
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[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
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[tsi] => audio/TSP-audio
[wav] => audio/x-wav
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[f90] => text/plain
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(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
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[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
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[text] => text/plain
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[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
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[vivo] => video/vnd.vivo
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[m4v] => video/mp4
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[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
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[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
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[5] => zz-application/zz-winassoc-psd
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[ice] => x-conference/x-cooltalk
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[igs] => model/iges
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[msh] => model/mesh
[silo] => model/mesh
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[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
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(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
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)
[wml] => text/vnd.wap.wml
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[woff] => application/x-font-woff
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[manifest] => text/cache-manifest
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[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
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[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
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[xml] => Array
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[0] => Array
(
[0] => RequestHandlerComponent Object
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)
)
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[_viewClassMap:protected] => Array
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[json] => Json
[xml] => Xml
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[_Collection:protected] => ComponentCollection Object
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[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
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[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
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[10] => MIDP
[11] => NetFront
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[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[viewClass] => View
[View] =>
[ext] => .ctp
[plugin] =>
[cacheAction] =>
[passedArgs] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[scaffold] =>
[methods] => Array
(
[0] => view_result
[1] => custom_tree_creation
)
[modelClass] => Annotation
[modelKey] => analysi
[validationErrors] =>
[_mergeParent:protected] => AppController
[_eventManager:protected] => CakeEventManager Object
(
[_listeners:protected] => Array
(
[Controller.initialize] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
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[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
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)
[command] => java -Djava.awt.headless=true
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[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
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[command] => perl -w
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[bash] => Array
(
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(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
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(
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[command] =>
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[local_settings] =>
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(
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(
[modules] => Array
(
[0] => blast
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[command] => blastdbcmd
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[blast] => Array
(
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(
[modules] => Array
(
[0] => blast
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[command] =>
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[muscle] => Array
(
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(
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[mafft] => Array
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[iqtree] => Array
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[modules] => Array
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[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
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(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
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)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
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(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
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[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
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(
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[patch] => Array
(
[env] => REQUEST_METHOD
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[post] => Array
(
[env] => REQUEST_METHOD
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[put] => Array
(
[env] => REQUEST_METHOD
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[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
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[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
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[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
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[ssl] => Array
(
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[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
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[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
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[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => AnalysisController Object
*RECURSION*
[1] => beforeFilter
)
[passParams] =>
)
)
)
[Controller.startup] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
[4] => Sequence
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => java/x86_64/21.0.2
)
[command] => java -Djava.awt.headless=true
)
[local_settings] => java -Djava.awt.headless=true
[db_connector] => mysql-connector-java-8.0.21.jar
)
[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
)
[command] => perl -w
)
[local_settings] => /usr/bin/perl
)
[bash] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => bedops/x86_64/2.4.37
)
[command] =>
)
[local_settings] =>
)
[blastdbcmd] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] => blastdbcmd
)
[local_settings] => /usr/local/blast/2.2.24/bin/blastdbcmd
)
[blast] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] =>
)
[local_settings] => /usr/local/blast/2.2.24/bin/
)
[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => muscle/x86_64/3.8.31
)
)
)
[mafft] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => mafft/x86_64/7.187
)
)
)
[phyml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => phyml/x86_64/20150219
)
)
)
[fasttree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => fasttree/x86_64/2.1.7
)
)
)
[raxml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => raxml/x86_64/8.2.8
)
)
)
[iqtree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => iqtree/x86_64/1.5.5
)
)
)
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
[1] => Coordinates
[2] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
)
)
[Controller.beforeRender] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
[4] => Sequence
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => java/x86_64/21.0.2
)
[command] => java -Djava.awt.headless=true
)
[local_settings] => java -Djava.awt.headless=true
[db_connector] => mysql-connector-java-8.0.21.jar
)
[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
)
[command] => perl -w
)
[local_settings] => /usr/bin/perl
)
[bash] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => bedops/x86_64/2.4.37
)
[command] =>
)
[local_settings] =>
)
[blastdbcmd] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] => blastdbcmd
)
[local_settings] => /usr/local/blast/2.2.24/bin/blastdbcmd
)
[blast] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] =>
)
[local_settings] => /usr/local/blast/2.2.24/bin/
)
[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => muscle/x86_64/3.8.31
)
)
)
[mafft] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => mafft/x86_64/7.187
)
)
)
[phyml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => phyml/x86_64/20150219
)
)
)
[fasttree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => fasttree/x86_64/2.1.7
)
)
)
[raxml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => raxml/x86_64/8.2.8
)
)
)
[iqtree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => iqtree/x86_64/1.5.5
)
)
)
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
[1] => Coordinates
[2] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => AnalysisController Object
*RECURSION*
[1] => beforeRender
)
[passParams] =>
)
)
)
[Controller.beforeRedirect] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
[4] => Sequence
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => java/x86_64/21.0.2
)
[command] => java -Djava.awt.headless=true
)
[local_settings] => java -Djava.awt.headless=true
[db_connector] => mysql-connector-java-8.0.21.jar
)
[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
)
[command] => perl -w
)
[local_settings] => /usr/bin/perl
)
[bash] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => bedops/x86_64/2.4.37
)
[command] =>
)
[local_settings] =>
)
[blastdbcmd] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] => blastdbcmd
)
[local_settings] => /usr/local/blast/2.2.24/bin/blastdbcmd
)
[blast] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] =>
)
[local_settings] => /usr/local/blast/2.2.24/bin/
)
[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => muscle/x86_64/3.8.31
)
)
)
[mafft] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => mafft/x86_64/7.187
)
)
)
[phyml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => phyml/x86_64/20150219
)
)
)
[fasttree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => fasttree/x86_64/2.1.7
)
)
)
[raxml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => raxml/x86_64/8.2.8
)
)
)
[iqtree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => iqtree/x86_64/1.5.5
)
)
)
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
[1] => Coordinates
[2] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
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[_input:protected] =>
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[1] => Array
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)
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*RECURSION*
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[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
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(
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)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
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(
)
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(
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[_Collection:protected] => ComponentCollection Object
*RECURSION*
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(
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[_Collection:protected] => ComponentCollection Object
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)
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[GenomeBrowser] => Array
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(
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[settings] => Array
(
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)
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)
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)
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)
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[modules] => Array
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[command] =>
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[local_settings] =>
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[bedops] => Array
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[muscle] => Array
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[mafft] => Array
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[modules] => Array
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[phyml] => Array
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[fasttree] => Array
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[raxml] => Array
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[iqtree] => Array
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[_Collection:protected] => ComponentCollection Object
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(
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)
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[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
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*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
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)
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[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
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[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
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*RECURSION*
[components] => Array
(
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[_Collection:protected] => ComponentCollection Object
*RECURSION*
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(
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)
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[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
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[_Collection:protected] => ComponentCollection Object
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(
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[_componentMap:protected] => Array
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[Blast] => Array
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)
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[Coordinates] => Array
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)
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[controller] => AnalysisController Object
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[RequestHandler] => RequestHandlerComponent Object
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[ajaxLayout] => ajax
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[request] => CakeRequest Object
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[params] => Array
(
[plugin] =>
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(
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[_input:protected] =>
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[_mimeTypes:protected] => Array
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[htm] => Array
(
[0] => text/html
[1] => */*
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[ics] => text/calendar
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[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => AnalysisController Object
*RECURSION*
[1] => afterFilter
)
[passParams] =>
)
)
)
)
[_isGlobal:protected] =>
)
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
*RECURSION*
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
[4] => Sequence
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => java/x86_64/21.0.2
)
[command] => java -Djava.awt.headless=true
)
[local_settings] => java -Djava.awt.headless=true
[db_connector] => mysql-connector-java-8.0.21.jar
)
[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
)
[command] => perl -w
)
[local_settings] => /usr/bin/perl
)
[bash] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => bedops/x86_64/2.4.37
)
[command] =>
)
[local_settings] =>
)
[blastdbcmd] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] => blastdbcmd
)
[local_settings] => /usr/local/blast/2.2.24/bin/blastdbcmd
)
[blast] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] =>
)
[local_settings] => /usr/local/blast/2.2.24/bin/
)
[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => muscle/x86_64/3.8.31
)
)
)
[mafft] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => mafft/x86_64/7.187
)
)
)
[phyml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => phyml/x86_64/20150219
)
)
)
[fasttree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => fasttree/x86_64/2.1.7
)
)
)
[raxml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => raxml/x86_64/8.2.8
)
)
)
[iqtree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => iqtree/x86_64/1.5.5
)
)
)
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
[1] => Coordinates
[2] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
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[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
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[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
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[8] => iPad
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[10] => MIDP
[11] => NetFront
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[13] => Opera Mini
[14] => Opera Mobi
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[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
*RECURSION*
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
[4] => Sequence
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => java/x86_64/21.0.2
)
[command] => java -Djava.awt.headless=true
)
[local_settings] => java -Djava.awt.headless=true
[db_connector] => mysql-connector-java-8.0.21.jar
)
[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
)
[command] => perl -w
)
[local_settings] => /usr/bin/perl
)
[bash] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => bedops/x86_64/2.4.37
)
[command] =>
)
[local_settings] =>
)
[blastdbcmd] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] => blastdbcmd
)
[local_settings] => /usr/local/blast/2.2.24/bin/blastdbcmd
)
[blast] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] =>
)
[local_settings] => /usr/local/blast/2.2.24/bin/
)
[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => muscle/x86_64/3.8.31
)
)
)
[mafft] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => mafft/x86_64/7.187
)
)
)
[phyml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => phyml/x86_64/20150219
)
)
)
[fasttree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => fasttree/x86_64/2.1.7
)
)
)
[raxml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => raxml/x86_64/8.2.8
)
)
)
[iqtree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => iqtree/x86_64/1.5.5
)
)
)
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
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(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
[1] => Coordinates
[2] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
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[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
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)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
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)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
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)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
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(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
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[13] => Opera Mini
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[21] => Symbian
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[25] => Windows Phone OS
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[requested] => Array
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[json] => Array
(
[accept] => Array
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[0] => application/json
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[param] => ext
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[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
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[param] => ext
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)
)
[_input:protected] =>
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[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
*RECURSION*
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
*RECURSION*
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
[4] => Sequence
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => java/x86_64/21.0.2
)
[command] => java -Djava.awt.headless=true
)
[local_settings] => java -Djava.awt.headless=true
[db_connector] => mysql-connector-java-8.0.21.jar
)
[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
)
[command] => perl -w
)
[local_settings] => /usr/bin/perl
)
[bash] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => bedops/x86_64/2.4.37
)
[command] =>
)
[local_settings] =>
)
[blastdbcmd] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] => blastdbcmd
)
[local_settings] => /usr/local/blast/2.2.24/bin/blastdbcmd
)
[blast] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] =>
)
[local_settings] => /usr/local/blast/2.2.24/bin/
)
[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => muscle/x86_64/3.8.31
)
)
)
[mafft] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => mafft/x86_64/7.187
)
)
)
[phyml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => phyml/x86_64/20150219
)
)
)
[fasttree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => fasttree/x86_64/2.1.7
)
)
)
[raxml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => raxml/x86_64/8.2.8
)
)
)
[iqtree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => iqtree/x86_64/1.5.5
)
)
)
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
[1] => Coordinates
[2] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
*RECURSION*
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
[4] => Sequence
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => java/x86_64/21.0.2
)
[command] => java -Djava.awt.headless=true
)
[local_settings] => java -Djava.awt.headless=true
[db_connector] => mysql-connector-java-8.0.21.jar
)
[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
)
[command] => perl -w
)
[local_settings] => /usr/bin/perl
)
[bash] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => bedops/x86_64/2.4.37
)
[command] =>
)
[local_settings] =>
)
[blastdbcmd] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] => blastdbcmd
)
[local_settings] => /usr/local/blast/2.2.24/bin/blastdbcmd
)
[blast] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] =>
)
[local_settings] => /usr/local/blast/2.2.24/bin/
)
[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => muscle/x86_64/3.8.31
)
)
)
[mafft] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => mafft/x86_64/7.187
)
)
)
[phyml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => phyml/x86_64/20150219
)
)
)
[fasttree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => fasttree/x86_64/2.1.7
)
)
)
[raxml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => raxml/x86_64/8.2.8
)
)
)
[iqtree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => iqtree/x86_64/1.5.5
)
)
)
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
[1] => Coordinates
[2] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
*RECURSION*
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
*RECURSION*
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
[4] => Sequence
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => java/x86_64/21.0.2
)
[command] => java -Djava.awt.headless=true
)
[local_settings] => java -Djava.awt.headless=true
[db_connector] => mysql-connector-java-8.0.21.jar
)
[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
)
[command] => perl -w
)
[local_settings] => /usr/bin/perl
)
[bash] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => bedops/x86_64/2.4.37
)
[command] =>
)
[local_settings] =>
)
[blastdbcmd] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] => blastdbcmd
)
[local_settings] => /usr/local/blast/2.2.24/bin/blastdbcmd
)
[blast] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] =>
)
[local_settings] => /usr/local/blast/2.2.24/bin/
)
[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => muscle/x86_64/3.8.31
)
)
)
[mafft] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => mafft/x86_64/7.187
)
)
)
[phyml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => phyml/x86_64/20150219
)
)
)
[fasttree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => fasttree/x86_64/2.1.7
)
)
)
[raxml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => raxml/x86_64/8.2.8
)
)
)
[iqtree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => iqtree/x86_64/1.5.5
)
)
)
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
[1] => Coordinates
[2] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
*RECURSION*
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
[4] => Sequence
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => java/x86_64/21.0.2
)
[command] => java -Djava.awt.headless=true
)
[local_settings] => java -Djava.awt.headless=true
[db_connector] => mysql-connector-java-8.0.21.jar
)
[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
)
[command] => perl -w
)
[local_settings] => /usr/bin/perl
)
[bash] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => bedops/x86_64/2.4.37
)
[command] =>
)
[local_settings] =>
)
[blastdbcmd] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] => blastdbcmd
)
[local_settings] => /usr/local/blast/2.2.24/bin/blastdbcmd
)
[blast] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] =>
)
[local_settings] => /usr/local/blast/2.2.24/bin/
)
[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => muscle/x86_64/3.8.31
)
)
)
[mafft] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => mafft/x86_64/7.187
)
)
)
[phyml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => phyml/x86_64/20150219
)
)
)
[fasttree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => fasttree/x86_64/2.1.7
)
)
)
[raxml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => raxml/x86_64/8.2.8
)
)
)
[iqtree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => iqtree/x86_64/1.5.5
)
)
)
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
[1] => Coordinates
[2] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
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)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
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[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
*RECURSION*
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
[4] => Sequence
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => java/x86_64/21.0.2
)
[command] => java -Djava.awt.headless=true
)
[local_settings] => java -Djava.awt.headless=true
[db_connector] => mysql-connector-java-8.0.21.jar
)
[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
)
[command] => perl -w
)
[local_settings] => /usr/bin/perl
)
[bash] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => bedops/x86_64/2.4.37
)
[command] =>
)
[local_settings] =>
)
[blastdbcmd] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] => blastdbcmd
)
[local_settings] => /usr/local/blast/2.2.24/bin/blastdbcmd
)
[blast] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] =>
)
[local_settings] => /usr/local/blast/2.2.24/bin/
)
[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => muscle/x86_64/3.8.31
)
)
)
[mafft] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => mafft/x86_64/7.187
)
)
)
[phyml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => phyml/x86_64/20150219
)
)
)
[fasttree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => fasttree/x86_64/2.1.7
)
)
)
[raxml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => raxml/x86_64/8.2.8
)
)
)
[iqtree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => iqtree/x86_64/1.5.5
)
)
)
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
[1] => Coordinates
[2] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
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[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
*RECURSION*
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
[4] => Sequence
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => java/x86_64/21.0.2
)
[command] => java -Djava.awt.headless=true
)
[local_settings] => java -Djava.awt.headless=true
[db_connector] => mysql-connector-java-8.0.21.jar
)
[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
)
[command] => perl -w
)
[local_settings] => /usr/bin/perl
)
[bash] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => bedops/x86_64/2.4.37
)
[command] =>
)
[local_settings] =>
)
[blastdbcmd] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] => blastdbcmd
)
[local_settings] => /usr/local/blast/2.2.24/bin/blastdbcmd
)
[blast] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] =>
)
[local_settings] => /usr/local/blast/2.2.24/bin/
)
[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => muscle/x86_64/3.8.31
)
)
)
[mafft] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => mafft/x86_64/7.187
)
)
)
[phyml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => phyml/x86_64/20150219
)
)
)
[fasttree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => fasttree/x86_64/2.1.7
)
)
)
[raxml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => raxml/x86_64/8.2.8
)
)
)
[iqtree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => iqtree/x86_64/1.5.5
)
)
)
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
[1] => Coordinates
[2] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
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[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
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[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
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[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
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[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
[4] => Sequence
)
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
*RECURSION*
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => java/x86_64/21.0.2
)
[command] => java -Djava.awt.headless=true
)
[local_settings] => java -Djava.awt.headless=true
[db_connector] => mysql-connector-java-8.0.21.jar
)
[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
)
[command] => perl -w
)
[local_settings] => /usr/bin/perl
)
[bash] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => bedops/x86_64/2.4.37
)
[command] =>
)
[local_settings] =>
)
[blastdbcmd] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] => blastdbcmd
)
[local_settings] => /usr/local/blast/2.2.24/bin/blastdbcmd
)
[blast] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] =>
)
[local_settings] => /usr/local/blast/2.2.24/bin/
)
[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => muscle/x86_64/3.8.31
)
)
)
[mafft] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => mafft/x86_64/7.187
)
)
)
[phyml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => phyml/x86_64/20150219
)
)
)
[fasttree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => fasttree/x86_64/2.1.7
)
)
)
[raxml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => raxml/x86_64/8.2.8
)
)
)
[iqtree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => iqtree/x86_64/1.5.5
)
)
)
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
[1] => Coordinates
[2] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => java/x86_64/21.0.2
)
[command] => java -Djava.awt.headless=true
)
[local_settings] => java -Djava.awt.headless=true
[db_connector] => mysql-connector-java-8.0.21.jar
)
[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
)
[command] => perl -w
)
[local_settings] => /usr/bin/perl
)
[bash] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => bedops/x86_64/2.4.37
)
[command] =>
)
[local_settings] =>
)
[blastdbcmd] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] => blastdbcmd
)
[local_settings] => /usr/local/blast/2.2.24/bin/blastdbcmd
)
[blast] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] =>
)
[local_settings] => /usr/local/blast/2.2.24/bin/
)
[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => muscle/x86_64/3.8.31
)
)
)
[mafft] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => mafft/x86_64/7.187
)
)
)
[phyml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => phyml/x86_64/20150219
)
)
)
[fasttree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => fasttree/x86_64/2.1.7
)
)
)
[raxml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => raxml/x86_64/8.2.8
)
)
)
[iqtree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => iqtree/x86_64/1.5.5
)
)
)
)
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
[4] => Sequence
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
*RECURSION*
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
[1] => Coordinates
[2] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
[4] => Sequence
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => java/x86_64/21.0.2
)
[command] => java -Djava.awt.headless=true
)
[local_settings] => java -Djava.awt.headless=true
[db_connector] => mysql-connector-java-8.0.21.jar
)
[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
)
[command] => perl -w
)
[local_settings] => /usr/bin/perl
)
[bash] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => bedops/x86_64/2.4.37
)
[command] =>
)
[local_settings] =>
)
[blastdbcmd] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] => blastdbcmd
)
[local_settings] => /usr/local/blast/2.2.24/bin/blastdbcmd
)
[blast] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] =>
)
[local_settings] => /usr/local/blast/2.2.24/bin/
)
[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => muscle/x86_64/3.8.31
)
)
)
[mafft] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => mafft/x86_64/7.187
)
)
)
[phyml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => phyml/x86_64/20150219
)
)
)
[fasttree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => fasttree/x86_64/2.1.7
)
)
)
[raxml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => raxml/x86_64/8.2.8
)
)
)
[iqtree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => iqtree/x86_64/1.5.5
)
)
)
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
*RECURSION*
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
[1] => Coordinates
[2] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
[4] => Sequence
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => java/x86_64/21.0.2
)
[command] => java -Djava.awt.headless=true
)
[local_settings] => java -Djava.awt.headless=true
[db_connector] => mysql-connector-java-8.0.21.jar
)
[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
)
[command] => perl -w
)
[local_settings] => /usr/bin/perl
)
[bash] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => bedops/x86_64/2.4.37
)
[command] =>
)
[local_settings] =>
)
[blastdbcmd] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] => blastdbcmd
)
[local_settings] => /usr/local/blast/2.2.24/bin/blastdbcmd
)
[blast] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] =>
)
[local_settings] => /usr/local/blast/2.2.24/bin/
)
[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => muscle/x86_64/3.8.31
)
)
)
[mafft] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => mafft/x86_64/7.187
)
)
)
[phyml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => phyml/x86_64/20150219
)
)
)
[fasttree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => fasttree/x86_64/2.1.7
)
)
)
[raxml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => raxml/x86_64/8.2.8
)
)
)
[iqtree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => iqtree/x86_64/1.5.5
)
)
)
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
*RECURSION*
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
[1] => Coordinates
[2] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
[4] => Sequence
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => java/x86_64/21.0.2
)
[command] => java -Djava.awt.headless=true
)
[local_settings] => java -Djava.awt.headless=true
[db_connector] => mysql-connector-java-8.0.21.jar
)
[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
)
[command] => perl -w
)
[local_settings] => /usr/bin/perl
)
[bash] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => bedops/x86_64/2.4.37
)
[command] =>
)
[local_settings] =>
)
[blastdbcmd] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] => blastdbcmd
)
[local_settings] => /usr/local/blast/2.2.24/bin/blastdbcmd
)
[blast] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] =>
)
[local_settings] => /usr/local/blast/2.2.24/bin/
)
[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => muscle/x86_64/3.8.31
)
)
)
[mafft] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => mafft/x86_64/7.187
)
)
)
[phyml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => phyml/x86_64/20150219
)
)
)
[fasttree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => fasttree/x86_64/2.1.7
)
)
)
[raxml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => raxml/x86_64/8.2.8
)
)
)
[iqtree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => iqtree/x86_64/1.5.5
)
)
)
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
*RECURSION*
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
[1] => Coordinates
[2] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
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[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
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[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
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[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
(
[name] => Sequence
[components] => Array
(
[0] => Blast
[1] => Coordinates
[2] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
)
[MsaUtils] => Array
(
[0] => 10
[1] => 11
)
[PhylogeneticUtils] => Array
(
[0] => 10
[1] => 12
)
[Sequence] => Array
(
[0] => 10
[1] => 13
)
[RequestHandler] => Array
(
[0] => 10
[1] => 14
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[PhylogeneticModuleUtils] => PhylogeneticModuleUtilsComponent Object
(
[name] => PhylogeneticModuleUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FastaUtils
[2] => MsaUtils
[3] => PhylogeneticUtils
[4] => Sequence
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
[MsaUtils] => Array
(
[class] => MsaUtils
[settings] => Array
(
)
)
[PhylogeneticUtils] => Array
(
[class] => PhylogeneticUtils
[settings] => Array
(
)
)
[Sequence] => Array
(
[class] => Sequence
[settings] => Array
(
)
)
)
)
[ExternalPrograms] => ExternalProgramsComponent Object
(
[name] => ExternalPrograms
[components] => Array
(
[0] => FastaUtils
)
[program_paths:ExternalProgramsComponent:private] => Array
(
[java] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => java/x86_64/21.0.2
)
[command] => java -Djava.awt.headless=true
)
[local_settings] => java -Djava.awt.headless=true
[db_connector] => mysql-connector-java-8.0.21.jar
)
[perl] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => perl
)
[command] => perl -w
)
[local_settings] => /usr/bin/perl
)
[bash] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
)
[command] =>
)
[local_settings] =>
)
[bedops] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => bedops/x86_64/2.4.37
)
[command] =>
)
[local_settings] =>
)
[blastdbcmd] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] => blastdbcmd
)
[local_settings] => /usr/local/blast/2.2.24/bin/blastdbcmd
)
[blast] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => blast
)
[command] =>
)
[local_settings] => /usr/local/blast/2.2.24/bin/
)
[muscle] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => muscle/x86_64/3.8.31
)
)
)
[mafft] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => mafft/x86_64/7.187
)
)
)
[phyml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => phyml/x86_64/20150219
)
)
)
[fasttree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => fasttree/x86_64/2.1.7
)
)
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[raxml] => Array
(
[cluster_settings] => Array
(
[modules] => Array
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)
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[iqtree] => Array
(
[cluster_settings] => Array
(
[modules] => Array
(
[0] => iqtree/x86_64/1.5.5
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)
)
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[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FastaUtils] => Array
(
[class] => FastaUtils
[settings] => Array
(
)
)
)
)
[FastaUtils] => FastaUtilsComponent Object
(
[name] => FastaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[MsaUtils] => MsaUtilsComponent Object
(
[name] => MsaUtils
[controller] => AnalysisController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[PhylogeneticUtils] => PhylogeneticUtilsComponent Object
(
[name] => PhylogeneticUtils
[controller] => AnalysisController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
)
[Sequence] => SequenceComponent Object
*RECURSION*
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
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)
[delete] => Array
(
[env] => REQUEST_METHOD
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[head] => Array
(
[env] => REQUEST_METHOD
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[options] => Array
(
[env] => REQUEST_METHOD
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[ssl] => Array
(
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)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
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)
[flash] => Array
(
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[mobile] => Array
(
[env] => HTTP_USER_AGENT
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[1] => AvantGo
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[3] => BlackBerry
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[13] => Opera Mini
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[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
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)
[requested] => Array
(
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[value] => 1
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[json] => Array
(
[accept] => Array
(
[0] => application/json
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[param] => ext
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[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
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[param] => ext
[value] => xml
)
)
[_input:protected] =>
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[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
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[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
[checkHttpCache] => 1
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
[params] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[Blast] => Array
(
[class] => Blast
[settings] => Array
(
)
)
[Coordinates] => Array
(
[class] => Coordinates
[settings] => Array
(
)
)
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
)
[controller] => AnalysisController Object
*RECURSION*
)
[RequestHandler] => RequestHandlerComponent Object
(
[ajaxLayout] => ajax
[enabled] => 1
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
(
)
[pass] => Array
(
[0] => gene_id
[1] => TWI36G0290
)
[isAjax] =>
)
[data] => Array
(
)
[query] => Array
(
)
[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/analysis/custom_tree_creation/gene_id/TWI36G0290
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
[dvi] => application/x-dvi
[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
[gtar] => application/x-gtar
[gz] => application/x-gzip
[bz2] => application/x-bzip
[7z] => application/x-7z-compressed
[hdf] => application/x-hdf
[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
[js] => application/javascript
[jsonapi] => application/vnd.api+json
[latex] => application/x-latex
[lha] => application/octet-stream
[lsp] => application/x-lisp
[lzh] => application/octet-stream
[man] => application/x-troff-man
[me] => application/x-troff-me
[mif] => application/vnd.mif
[ms] => application/x-troff-ms
[nc] => application/x-netcdf
[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
[pgn] => application/x-chess-pgn
[pot] => application/vnd.ms-powerpoint
[pps] => application/vnd.ms-powerpoint
[ppt] => application/vnd.ms-powerpoint
[pptx] => application/vnd.openxmlformats-officedocument.presentationml.presentation
[ppz] => application/vnd.ms-powerpoint
[pre] => application/x-freelance
[prt] => application/pro_eng
[ps] => application/postscript
[roff] => application/x-troff
[scm] => application/x-lotusscreencam
[set] => application/set
[sh] => application/x-sh
[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
[sv4cpio] => application/x-sv4cpio
[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
[tcl] => application/x-tcl
[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
[vda] => application/vda
[xlc] => application/vnd.ms-excel
[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[ext] =>
[_renderType:protected] =>
[_inputTypeMap:protected] => Array
(
[json] => Array
(
[0] => json_decode
[1] => 1
)
[xml] => Array
(
[0] => Array
(
[0] => RequestHandlerComponent Object
*RECURSION*
[1] => convertXml
)
)
)
[_viewClassMap:protected] => Array
(
[json] => Json
[xml] => Xml
)
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => AnalysisController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[PhylogeneticModuleUtils] => Array
(
[0] => 10
[1] => 8
)
[ExternalPrograms] => Array
(
[0] => 10
[1] => 9
)
[FastaUtils] => Array
(
[0] => 10
[1] => 10
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[MsaUtils] => Array
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[PhylogeneticUtils] => Array
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[Sequence] => Array
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[0] => 10
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[RequestHandler] => Array
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[_loaded:protected] => Array
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[_Collection:protected] => ComponentCollection Object
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[_componentMap:protected] => Array
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[Blast] => Array
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[Coordinates] => Array
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[ExternalPrograms] => Array
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[controller] => AnalysisController Object
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[RequestHandler] => RequestHandlerComponent Object
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[defaultPriority] => 10
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[settings] => Array
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[components] => Array
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[_componentMap:protected] => Array
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[params] => CakeRequest Object
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[params] => Array
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[plugin] =>
[controller] => analysis
[action] => custom_tree_creation
[named] => Array
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[pass] => Array
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[isAjax] =>
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[data] => Array
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[query] => Array
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[url] => analysis/custom_tree_creation/gene_id/TWI36G0290
[base] => /plaza.dev/_dev_instances/feedback
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[_detectors:protected] => Array
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[get] => Array
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[patch] => Array
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[put] => Array
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[delete] => Array
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[head] => Array
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[ssl] => Array
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[ajax] => Array
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[flash] => Array
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[mobile] => Array
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[1] => AvantGo
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[25] => Windows Phone OS
[26] => Xiino
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[requested] => Array
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[json] => Array
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[xml] => Array
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[accept] => Array
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[1] => text/xml
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[param] => ext
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[_input:protected] =>
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[Annotation] => Annotation Object
(
[name] => Annotation
[useTable] => annotation
[primaryKey] => gene_id
[cacheQueries] =>
[cacheSources] =>
[belongsTo] => Array
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[AnnotSource] => Array
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[hasMany] => Array
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[id] =>
[data] => Array
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[schemaName] => db_plaza_public_dicots_05
[table] => annotation
[_schema:protected] => Array
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[gene_id] => Array
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[default] =>
[length] => 50
[key] => primary
[collate] => latin1_swedish_ci
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[transcript] => Array
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[collate] => latin1_swedish_ci
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[strand] => Array
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[collate] => latin1_swedish_ci
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[chr] => Array
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[key] => index
[collate] => latin1_swedish_ci
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[check_transcript] => Array
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)
[validationErrors] => Array
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)
[validationDomain] =>
[tablePrefix] =>
[plugin] =>
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[tableToModel] => Array
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[annotation] => Annotation
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[hasOne] => Array
(
)
[hasAndBelongsToMany] => Array
(
)
[actsAs] =>
[Behaviors] => BehaviorCollection Object
(
[modelName] => Annotation
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[whitelist] => Array
(
)
[findQueryType] =>
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[order] =>
[virtualFields] => Array
(
)
[_associationKeys:protected] => Array
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[belongsTo] => Array
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[0] => className
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[2] => conditions
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[hasOne] => Array
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[hasMany] => Array
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[_associations:protected] => Array
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(
)
[__backInnerAssociation] => Array
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[__backContainableAssociation] => Array
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[_associations:protected] => Array
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(
)
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)
[__backOriginalAssociation] => Array
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)
[__backContainableAssociation] => Array
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[__safeUpdateMode] =>
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[_eventManager:protected] => CakeEventManager Object
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[_listeners:protected] => Array
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[callable] => Array
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[_mappedMethods:protected] => Array
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[_enabled:protected] => Array
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[_loaded:protected] => Array
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[1] => Array
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[Model.afterFind] => Array
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[1] => Array
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[0] => Array
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[callable] => Array
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[modelName] => Configuration
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[_mappedMethods:protected] => Array
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[_enabled:protected] => Array
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[_loaded:protected] => Array
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[defaultPriority] => 10
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[1] => trigger
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[1] => Array
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[callable] => Array
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[0] => Configuration Object
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[passParams] =>
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[Model.beforeSave] => Array
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[callable] => Array
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[modelName] => Configuration
[_methods:protected] => Array
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[_mappedMethods:protected] => Array
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[Model.afterSave] => Array
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[callable] => Array
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[_enabled:protected] => Array
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[_loaded:protected] => Array
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[1] => Array
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[Model.beforeDelete] => Array
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[0] => Array
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[callable] => Array
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[modelName] => Configuration
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[_enabled:protected] => Array
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[_loaded:protected] => Array
(
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[defaultPriority] => 10
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[1] => trigger
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[1] => Array
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[callable] => Array
(
[0] => Configuration Object
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[1] => beforeDelete
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[passParams] => 1
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[Model.afterDelete] => Array
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[0] => Array
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[callable] => Array
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[0] => BehaviorCollection Object
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[modelName] => Configuration
[_methods:protected] => Array
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[1] => afterDelete
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[passParams] =>
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[_isGlobal:protected] =>
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[_validator:protected] =>
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[AnnotSource] => AnnotSource Object
(
[name] => AnnotSource
[useTable] => annot_sources
[primaryKey] => species
[displayField] => common_name
[useDbConfig] => default
[id] =>
[data] => Array
(
)
[schemaName] => db_plaza_public_dicots_05
[table] => annot_sources
[_schema:protected] => Array
(
[source] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 255
[collate] => latin1_swedish_ci
[charset] => latin1
)
[url] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 250
[collate] => latin1_swedish_ci
[charset] => latin1
)
[species] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 21
[key] => primary
[collate] => latin1_swedish_ci
[charset] => latin1
)
[common_name] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 100
[key] => index
[collate] => latin1_swedish_ci
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[eco_type] => Array
(
[type] => string
[null] => 1
[default] =>
[length] => 100
[collate] => latin1_swedish_ci
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[description] => Array
(
[type] => text
[null] =>
[default] =>
[length] =>
[collate] => latin1_swedish_ci
[charset] => latin1
)
[paper] => Array
(
[type] => text
[null] => 1
[default] =>
[length] =>
[collate] => latin1_swedish_ci
[charset] => latin1
)
[pubmed_id] => Array
(
[type] => integer
[null] => 1
[default] =>
[length] =>
[unsigned] =>
)
[tax_id] => Array
(
[type] => integer
[null] =>
[default] => 0
[length] =>
[unsigned] =>
)
[mitochondrion] => Array
(
[type] => string
[null] => 1
[default] =>
[length] => 15
[collate] => latin1_swedish_ci
[charset] => latin1
)
[chloroplast] => Array
(
[type] => string
[null] => 1
[default] =>
[length] => 15
[collate] => latin1_swedish_ci
[charset] => latin1
)
[disclaimer] => Array
(
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[default] =>
[length] =>
[collate] => latin1_swedish_ci
[charset] => latin1
)
)
[validate] => Array
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)
[validationErrors] => Array
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)
[validationDomain] =>
[tablePrefix] =>
[plugin] =>
[alias] => AnnotSource
[tableToModel] => Array
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[annot_sources] => AnnotSource
)
[cacheQueries] =>
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(
)
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)
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)
[hasAndBelongsToMany] => Array
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)
[actsAs] =>
[Behaviors] => BehaviorCollection Object
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(
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[_associations:protected] => Array
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[__backAssociation] => Array
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)
[__backOriginalAssociation] => Array
(
)
[__backContainableAssociation] => Array
(
)
[__safeUpdateMode] =>
[useConsistentAfterFind] => 1
[_insertID:protected] =>
[_sourceConfigured:protected] => 1
[findMethods] => Array
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[first] => 1
[count] => 1
[neighbors] => 1
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[_eventManager:protected] => CakeEventManager Object
(
[_listeners:protected] => Array
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[Model.beforeFind] => Array
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[10] => Array
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[0] => Array
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[callable] => Array
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[modelName] => AnnotSource
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)
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)
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[Model.beforeValidate] => Array
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[Model.afterValidate] => Array
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[modelName] => AnnotSource
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(
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[1] => trigger
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[1] => Array
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[passParams] => 1
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[Model.afterSave] => Array
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[0] => Array
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[callable] => Array
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[_methods:protected] => Array
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(
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[1] => trigger
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[1] => Array
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*RECURSION*
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[Model.beforeDelete] => Array
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[0] => Array
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[callable] => Array
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[0] => BehaviorCollection Object
(
[modelName] => AnnotSource
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[_enabled:protected] => Array
(
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(
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[defaultPriority] => 10
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[1] => Array
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[Model.afterDelete] => Array
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[_isGlobal:protected] =>
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[GeneFamilyTypes] => GeneFamilyTypes Object
(
[name] => GeneFamilyTypes
[useTable] => gene_family_types
[primaryKey] => id
[displayField] => name
[useDbConfig] => default
[id] =>
[data] => Array
(
)
[schemaName] => db_plaza_public_dicots_05
[table] => gene_family_types
[_schema:protected] => Array
(
[id] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 10
[key] => primary
[collate] => latin1_swedish_ci
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[charset] => latin1
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[name] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 50
[collate] => latin1_swedish_ci
[comment] => description of gene family type
[charset] => latin1
)
[prefix] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 10
[collate] => latin1_swedish_ci
[comment] => prefix used for building the gf type. for compatibility reasons. shouldn't be used.
[charset] => latin1
)
[gene_type] => Array
(
[type] => enum('coding','rna','pseudo','te')
[null] =>
[default] => coding
[length] => 6
[collate] => latin1_swedish_ci
[comment] => should match type from table annotation
[charset] => latin1
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[method] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 500
[collate] => latin1_swedish_ci
[comment] => JSON style information of the building method+parameters used
[charset] => latin1
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[ancestry] => Array
(
[type] => enum('homology','orthology','homeology','other')
[null] =>
[default] => homology
[length] => 9
[key] => index
[collate] => latin1_swedish_ci
[comment] => type of gene family content
[charset] => latin1
)
[parent_id] => Array
(
[type] => string
[null] => 1
[default] =>
[length] => 10
[collate] => latin1_swedish_ci
[comment] => link to the parent id if appropriate
[charset] => latin1
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[validate] => Array
(
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[validationErrors] => Array
(
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[validationDomain] =>
[tablePrefix] =>
[plugin] =>
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[tableToModel] => Array
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[cacheQueries] =>
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(
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[hasAndBelongsToMany] => Array
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[actsAs] =>
[Behaviors] => BehaviorCollection Object
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(
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[defaultPriority] => 10
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(
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[cacheSources] => 1
[findQueryType] =>
[recursive] => 1
[order] =>
[virtualFields] => Array
(
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[_associationKeys:protected] => Array
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[hasOne] => Array
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[4] => order
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[hasMany] => Array
(
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[2] => conditions
[3] => fields
[4] => order
[5] => limit
[6] => offset
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[8] => exclusive
[9] => finderQuery
[10] => counterQuery
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[hasAndBelongsToMany] => Array
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[0] => className
[1] => joinTable
[2] => with
[3] => foreignKey
[4] => associationForeignKey
[5] => conditions
[6] => fields
[7] => order
[8] => limit
[9] => offset
[10] => unique
[11] => finderQuery
)
)
[_associations:protected] => Array
(
[0] => belongsTo
[1] => hasOne
[2] => hasMany
[3] => hasAndBelongsToMany
)
[__backAssociation] => Array
(
)
[__backInnerAssociation] => Array
(
)
[__backOriginalAssociation] => Array
(
)
[__backContainableAssociation] => Array
(
)
[__safeUpdateMode] =>
[useConsistentAfterFind] => 1
[_insertID:protected] =>
[_sourceConfigured:protected] => 1
[findMethods] => Array
(
[all] => 1
[first] => 1
[count] => 1
[neighbors] => 1
[list] => 1
[threaded] => 1
)
[_eventManager:protected] => CakeEventManager Object
(
[_listeners:protected] => Array
(
[Model.beforeFind] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => GeneFamilyTypes
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => GeneFamilyTypes Object
*RECURSION*
[1] => beforeFind
)
[passParams] => 1
)
)
)
[Model.afterFind] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => GeneFamilyTypes
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => GeneFamilyTypes Object
*RECURSION*
[1] => afterFind
)
[passParams] => 1
)
)
)
[Model.beforeValidate] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => GeneFamilyTypes
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => GeneFamilyTypes Object
*RECURSION*
[1] => beforeValidate
)
[passParams] => 1
)
)
)
[Model.afterValidate] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => GeneFamilyTypes
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => GeneFamilyTypes Object
*RECURSION*
[1] => afterValidate
)
[passParams] =>
)
)
)
[Model.beforeSave] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => GeneFamilyTypes
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => GeneFamilyTypes Object
*RECURSION*
[1] => beforeSave
)
[passParams] => 1
)
)
)
[Model.afterSave] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => GeneFamilyTypes
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => GeneFamilyTypes Object
*RECURSION*
[1] => afterSave
)
[passParams] => 1
)
)
)
[Model.beforeDelete] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => GeneFamilyTypes
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => GeneFamilyTypes Object
*RECURSION*
[1] => beforeDelete
)
[passParams] => 1
)
)
)
[Model.afterDelete] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => GeneFamilyTypes
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => GeneFamilyTypes Object
*RECURSION*
[1] => afterDelete
)
[passParams] =>
)
)
)
)
[_isGlobal:protected] =>
)
[_validator:protected] =>
)
[Similarities] => Similarities Object
(
[name] => Similarities
[useTable] => similarities
[useDbConfig] => default
[id] =>
[data] => Array
(
)
[schemaName] => db_plaza_public_dicots_05
[table] => similarities
[primaryKey] => id
[_schema:protected] => Array
(
[species] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 21
[key] => index
[collate] => latin1_swedish_ci
[charset] => latin1
)
[query] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 50
[key] => primary
[collate] => latin1_swedish_ci
[charset] => latin1
)
[hits] => Array
(
[type] => binary
[null] =>
[default] =>
[length] =>
)
)
[validate] => Array
(
)
[validationErrors] => Array
(
)
[validationDomain] =>
[tablePrefix] =>
[plugin] =>
[alias] => Similarities
[tableToModel] => Array
(
[similarities] => Similarities
)
[cacheQueries] =>
[belongsTo] => Array
(
)
[hasOne] => Array
(
)
[hasMany] => Array
(
)
[hasAndBelongsToMany] => Array
(
)
[actsAs] =>
[Behaviors] => BehaviorCollection Object
(
[modelName] => Similarities
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[whitelist] => Array
(
)
[cacheSources] => 1
[findQueryType] =>
[recursive] => 1
[order] =>
[virtualFields] => Array
(
)
[_associationKeys:protected] => Array
(
[belongsTo] => Array
(
[0] => className
[1] => foreignKey
[2] => conditions
[3] => fields
[4] => order
[5] => counterCache
)
[hasOne] => Array
(
[0] => className
[1] => foreignKey
[2] => conditions
[3] => fields
[4] => order
[5] => dependent
)
[hasMany] => Array
(
[0] => className
[1] => foreignKey
[2] => conditions
[3] => fields
[4] => order
[5] => limit
[6] => offset
[7] => dependent
[8] => exclusive
[9] => finderQuery
[10] => counterQuery
)
[hasAndBelongsToMany] => Array
(
[0] => className
[1] => joinTable
[2] => with
[3] => foreignKey
[4] => associationForeignKey
[5] => conditions
[6] => fields
[7] => order
[8] => limit
[9] => offset
[10] => unique
[11] => finderQuery
)
)
[_associations:protected] => Array
(
[0] => belongsTo
[1] => hasOne
[2] => hasMany
[3] => hasAndBelongsToMany
)
[__backAssociation] => Array
(
)
[__backInnerAssociation] => Array
(
)
[__backOriginalAssociation] => Array
(
)
[__backContainableAssociation] => Array
(
)
[__safeUpdateMode] =>
[useConsistentAfterFind] => 1
[_insertID:protected] =>
[_sourceConfigured:protected] => 1
[findMethods] => Array
(
[all] => 1
[first] => 1
[count] => 1
[neighbors] => 1
[list] => 1
[threaded] => 1
)
[_eventManager:protected] => CakeEventManager Object
(
[_listeners:protected] => Array
(
[Model.beforeFind] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Similarities
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Similarities Object
*RECURSION*
[1] => beforeFind
)
[passParams] => 1
)
)
)
[Model.afterFind] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Similarities
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Similarities Object
*RECURSION*
[1] => afterFind
)
[passParams] => 1
)
)
)
[Model.beforeValidate] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Similarities
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Similarities Object
*RECURSION*
[1] => beforeValidate
)
[passParams] => 1
)
)
)
[Model.afterValidate] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Similarities
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Similarities Object
*RECURSION*
[1] => afterValidate
)
[passParams] =>
)
)
)
[Model.beforeSave] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Similarities
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Similarities Object
*RECURSION*
[1] => beforeSave
)
[passParams] => 1
)
)
)
[Model.afterSave] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Similarities
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Similarities Object
*RECURSION*
[1] => afterSave
)
[passParams] => 1
)
)
)
[Model.beforeDelete] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Similarities
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Similarities Object
*RECURSION*
[1] => beforeDelete
)
[passParams] => 1
)
)
)
[Model.afterDelete] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Similarities
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Similarities Object
*RECURSION*
[1] => afterDelete
)
[passParams] =>
)
)
)
)
[_isGlobal:protected] =>
)
[_validator:protected] =>
)
[GfDatum] => GfDatum Object
(
[name] => GfDatum
[useTable] => gf_data
[belongsTo] => Array
(
[Annotation] => Array
(
[className] => Annotation
[foreignKey] => gene_id
[conditions] =>
[fields] =>
[order] =>
[counterCache] =>
)
[Genefamily] => Array
(
[className] => GeneFamily
[foreignKey] => gf_id
[conditions] =>
[fields] =>
[order] =>
[counterCache] =>
)
)
[useDbConfig] => default
[id] =>
[data] => Array
(
)
[schemaName] => db_plaza_public_dicots_05
[table] => gf_data
[primaryKey] => id
[_schema:protected] => Array
(
[gf_id] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 50
[key] => primary
[collate] => latin1_swedish_ci
[charset] => latin1
)
[gf_type] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 10
[key] => index
[collate] => latin1_swedish_ci
[comment] => links to gene_family_types id
[charset] => latin1
)
[species] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 21
[key] => index
[collate] => latin1_swedish_ci
[charset] => latin1
)
[gene_id] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 50
[key] => primary
[collate] => latin1_swedish_ci
[charset] => latin1
)
[synteny_data] => Array
(
[type] => text
[null] => 1
[default] =>
[length] =>
[collate] => latin1_swedish_ci
[charset] => latin1
)
[cluster_data] => Array
(
[type] => float
[null] => 1
[default] =>
[length] =>
[unsigned] =>
)
[outlier] => Array
(
[type] => smallinteger
[null] =>
[default] => 0
[length] =>
[unsigned] =>
)
)
[validate] => Array
(
)
[validationErrors] => Array
(
)
[validationDomain] =>
[tablePrefix] =>
[plugin] =>
[alias] => GfDatum
[tableToModel] => Array
(
[gf_data] => GfDatum
)
[cacheQueries] =>
[hasOne] => Array
(
)
[hasMany] => Array
(
)
[hasAndBelongsToMany] => Array
(
)
[actsAs] =>
[Behaviors] => BehaviorCollection Object
(
[modelName] => GfDatum
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[whitelist] => Array
(
)
[cacheSources] => 1
[findQueryType] =>
[recursive] => 1
[order] =>
[virtualFields] => Array
(
)
[_associationKeys:protected] => Array
(
[belongsTo] => Array
(
[0] => className
[1] => foreignKey
[2] => conditions
[3] => fields
[4] => order
[5] => counterCache
)
[hasOne] => Array
(
[0] => className
[1] => foreignKey
[2] => conditions
[3] => fields
[4] => order
[5] => dependent
)
[hasMany] => Array
(
[0] => className
[1] => foreignKey
[2] => conditions
[3] => fields
[4] => order
[5] => limit
[6] => offset
[7] => dependent
[8] => exclusive
[9] => finderQuery
[10] => counterQuery
)
[hasAndBelongsToMany] => Array
(
[0] => className
[1] => joinTable
[2] => with
[3] => foreignKey
[4] => associationForeignKey
[5] => conditions
[6] => fields
[7] => order
[8] => limit
[9] => offset
[10] => unique
[11] => finderQuery
)
)
[_associations:protected] => Array
(
[0] => belongsTo
[1] => hasOne
[2] => hasMany
[3] => hasAndBelongsToMany
)
[__backAssociation] => Array
(
)
[__backInnerAssociation] => Array
(
)
[__backOriginalAssociation] => Array
(
)
[__backContainableAssociation] => Array
(
)
[__safeUpdateMode] =>
[useConsistentAfterFind] => 1
[_insertID:protected] =>
[_sourceConfigured:protected] => 1
[findMethods] => Array
(
[all] => 1
[first] => 1
[count] => 1
[neighbors] => 1
[list] => 1
[threaded] => 1
)
[_eventManager:protected] => CakeEventManager Object
(
[_listeners:protected] => Array
(
[Model.beforeFind] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => GfDatum
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => GfDatum Object
*RECURSION*
[1] => beforeFind
)
[passParams] => 1
)
)
)
[Model.afterFind] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => GfDatum
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => GfDatum Object
*RECURSION*
[1] => afterFind
)
[passParams] => 1
)
)
)
[Model.beforeValidate] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => GfDatum
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => GfDatum Object
*RECURSION*
[1] => beforeValidate
)
[passParams] => 1
)
)
)
[Model.afterValidate] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => GfDatum
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => GfDatum Object
*RECURSION*
[1] => afterValidate
)
[passParams] =>
)
)
)
[Model.beforeSave] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => GfDatum
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => GfDatum Object
*RECURSION*
[1] => beforeSave
)
[passParams] => 1
)
)
)
[Model.afterSave] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => GfDatum
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => GfDatum Object
*RECURSION*
[1] => afterSave
)
[passParams] => 1
)
)
)
[Model.beforeDelete] => Array
(
[10] => Array
(
[0] => Array
(
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[hasAndBelongsToMany] => Array
(
)
[actsAs] =>
[Behaviors] => BehaviorCollection Object
(
[modelName] => Trees
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[whitelist] => Array
(
)
[cacheSources] => 1
[findQueryType] =>
[recursive] => 1
[order] =>
[virtualFields] => Array
(
)
[_associationKeys:protected] => Array
(
[belongsTo] => Array
(
[0] => className
[1] => foreignKey
[2] => conditions
[3] => fields
[4] => order
[5] => counterCache
)
[hasOne] => Array
(
[0] => className
[1] => foreignKey
[2] => conditions
[3] => fields
[4] => order
[5] => dependent
)
[hasMany] => Array
(
[0] => className
[1] => foreignKey
[2] => conditions
[3] => fields
[4] => order
[5] => limit
[6] => offset
[7] => dependent
[8] => exclusive
[9] => finderQuery
[10] => counterQuery
)
[hasAndBelongsToMany] => Array
(
[0] => className
[1] => joinTable
[2] => with
[3] => foreignKey
[4] => associationForeignKey
[5] => conditions
[6] => fields
[7] => order
[8] => limit
[9] => offset
[10] => unique
[11] => finderQuery
)
)
[_associations:protected] => Array
(
[0] => belongsTo
[1] => hasOne
[2] => hasMany
[3] => hasAndBelongsToMany
)
[__backAssociation] => Array
(
)
[__backInnerAssociation] => Array
(
)
[__backOriginalAssociation] => Array
(
)
[__backContainableAssociation] => Array
(
)
[__safeUpdateMode] =>
[useConsistentAfterFind] => 1
[_insertID:protected] =>
[_sourceConfigured:protected] =>
[findMethods] => Array
(
[all] => 1
[first] => 1
[count] => 1
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[list] => 1
[threaded] => 1
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[_eventManager:protected] =>
[_validator:protected] =>
)
)
controller Notice (8) : Trying to get property 'Configuration' of non-object [APP/Controller/Component/GenomeBrowserComponent.php , line 105 ]Code Context
//Construct url for synteny-scores
$species_tree = $this -> controller -> Configuration -> getBasicSpeciesTree ();
$species = 'twi'
$configuration_settings = array(
'annotation_directory' => 'GFF/%SPECIES%/',
'annotation_file_compressed' => 'true',
'annotation_file_extension' => 'gff3',
'annotation_file_prefix' => 'annotation.all_transcripts.all_features',
'data_url' => 'https://ftp.psb.ugent.be/pub/plaza/plaza_public_dicots_05/',
'genomes_directory' => 'Genomes',
'genomes_file_compressed' => 'true',
'genomes_file_extension' => 'fasta'
)
$base_data_url = 'https://ftp.psb.ugent.be/pub/plaza/plaza_public_dicots_05/'
$genome_dir_url = 'https://ftp.psb.ugent.be/pub/plaza/plaza_public_dicots_05/Genomes/'
$annotation_dir_url = 'https://ftp.psb.ugent.be/pub/plaza/plaza_public_dicots_05/GFF/twi/'
$genome_file_name = 'twi.fasta.gz'
$annotation_file_name = 'annotation.all_transcripts.all_features.twi.gff3.gz'
$genome_file_url = 'https://ftp.psb.ugent.be/pub/plaza/plaza_public_dicots_05/Genomes/twi.fasta.gz'
$annotation_file_url = 'https://ftp.psb.ugent.be/pub/plaza/plaza_public_dicots_05/GFF/twi/annotation.all_transcripts.all_features.twi.gff3.gz' GenomeBrowserComponent::getValidatedDataSettings() - APP/Controller/Component/GenomeBrowserComponent.php, line 105
DataUtilsComponent::getSidebarToolsInfo() - APP/Controller/Component/DataUtilsComponent.php, line 65
AppController::beforeRender() - APP/Controller/AppController.php, line 94
CakeEventManager::dispatch() - CORE/Cake/Event/CakeEventManager.php, line 243
Controller::render() - CORE/Cake/Controller/Controller.php, line 936
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 151
Errors
Call to a member function getBasicSpeciesTree() on null
Error:
An Internal Error Has Occurred.
Stack Trace
APP/Controller/Component/DataUtilsComponent.php line 65 → GenomeBrowserComponent->getValidatedDataSettings() $default_hom_gf_type_id = $this -> GeneFamilies -> getHomologyCodingGeneFamilyType ();
$full_gene_info = $AnnotationModel -> getFullGeneInfo ( $gene_id );
pr ( $this -> controller );
$igv_genome_browser_info = $this -> GenomeBrowser -> getValidatedDataSettings ( $full_gene_info [ 'species' ],);
APP/Controller/AppController.php line 94 → DataUtilsComponent->getSidebarToolsInfo() $identifier = isset(( $this -> viewVars )[ "sidebar_information" ][ "id" ])?( $this -> viewVars )[ "sidebar_information" ][ "id" ]: null ;
if( $type === "gene_id" ){
$this -> set ( "sidebar" , "gene_sidebar" );
$this -> set ( "sidebar_info" , $this -> DataUtils -> getSidebarToolsInfo ( $identifier ));
}
CORE/Cake/Event/CakeEventManager.php line 243 → AppController->beforeRender() if ( $listener [ 'passParams' ] === true ) {
$result = call_user_func_array ( $listener [ 'callable' ], $event -> data );
} else {
$result = call_user_func ( $listener [ 'callable' ], $event );
}
CORE/Cake/Controller/Controller.php line 936 → CakeEventManager->dispatch() */
public function render ( $view = null , $layout = null ) {
$event = new CakeEvent ( 'Controller.beforeRender' , $this );
$this -> getEventManager ()-> dispatch ( $event );
if ( $event -> isStopped ()) {
CORE/Cake/Routing/Dispatcher.php line 200 → Controller->render() }
if ( $render && $controller -> autoRender ) {
$response = $controller -> render ();
} elseif (!( $result instanceof CakeResponse ) && $response -> body () === null ) {
CORE/Cake/Routing/Dispatcher.php line 167 → Dispatcher->_invoke() ));
}
$response = $this -> _invoke ( $controller , $request );
if (isset( $request -> params [ 'return' ])) {
APP/webroot/index.php line 151 → Dispatcher->dispatch() App :: uses ( 'Dispatcher' , 'Routing' );
$Dispatcher = new Dispatcher ();
$Dispatcher -> dispatch (new CakeRequest (), new CakeResponse (array( 'charset' => Configure :: read ( 'App.encoding' ))));