Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8919 Trifolium pratense HOM05D002030 ORTHO05D004391 2.4e-50 201.8 98 100.0
Medtr2g061630 Medicago truncatula HOM05D002030 ORTHO05D004391 6.9e-50 200.3 98 99.0
Ca_02885_v3 Cicer arietinum L. HOM05D002030 ORTHO05D004391 4.5e-49 197.6 98 96.9
Ca_02887_v3 Cicer arietinum L. HOM05D002030 ORTHO05D004391 4.5e-49 197.6 98 96.9
Lj3g0024225 Lotus japonicus HOM05D002030 ORTHO05D004391 7.6e-49 196.8 98 98.0
Psat1g127120 Pisum sativum HOM05D002030 ORTHO05D004391 7.6e-49 196.8 98 96.9
Lalb_Chr20g0108201 Lupinus albus HOM05D002030 ORTHO05D004391 1.7e-48 195.7 98 96.9
VMungo1080G0649 Vigna mungo HOM05D002030 ORTHO05D004391 5.0e-48 194.1 98 94.9
Glyma.08G157700 Glycine max HOM05D002030 ORTHO05D004391 2.5e-47 191.8 98 93.9
Glyma.15G268500 Glycine max HOM05D002030 ORTHO05D004391 2.5e-47 191.8 98 93.9
Phvul.005G041600 Phaseolus vulgaris HOM05D002030 ORTHO05D004391 2.5e-47 191.8 98 93.9
Lalb_Chr25g0283641 Lupinus albus HOM05D002030 ORTHO05D004391 3.2e-47 191.4 98 94.9
arahy.Tifrunner.gnm1.ann1.PFQ45M Arachis hypogaea HOM05D002030 ORTHO05D004391 7.9e-46 186.8 92 94.6
arahy.Tifrunner.gnm1.ann1.X24NYN Arachis hypogaea HOM05D002030 ORTHO05D004391 7.9e-46 186.8 92 94.6
Lj9A621G49 Lonicera japonica HOM05D002030 ORTHO05D004391 2.5e-39 165.2 98 80.6
Manes.10G152000 Manihot esculenta HOM05D002030 ORTHO05D004391 3.2e-39 164.9 90 85.6
Potri.001G230500 Populus trichocarpa HOM05D002030 ORTHO05D004391 4.2e-39 164.5 90 84.4
BcaB02g08193 Brassica carinata HOM05D002030 ORTHO05D004391 5.5e-39 164.1 96 78.1
HanXRQChr01g0018081 Helianthus annuus HOM05D002030 ORTHO05D004391 5.5e-39 164.1 90 84.4
MD02G1319300 Malus domestica HOM05D002030 ORTHO05D004391 5.5e-39 164.1 90 83.3
EL10Ac4g10124 Beta vulgaris HOM05D002030 ORTHO05D004391 7.2e-39 163.7 91 82.4
EL10Ac4g10165 Beta vulgaris HOM05D002030 ORTHO05D004391 7.2e-39 163.7 91 82.4
Lsat_1_v5_gn_1_87220 Lactuca sativa HOM05D002030 ORTHO05D004391 7.2e-39 163.7 90 84.4
MD00G1055300 Malus domestica HOM05D002030 ORTHO05D004391 7.2e-39 163.7 90 82.2
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 9.4e-39 163.3 91 83.5
COL.COLO4_26822 Corchorus olitorius HOM05D002030 ORTHO05D004391 9.4e-39 163.3 90 84.4
vmacro13609 Vaccinium macrocarpon HOM05D002030 ORTHO05D004391 9.4e-39 163.3 98 79.6
CSS0004924 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 1.2e-38 162.9 98 79.6
CSS0020062 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 1.2e-38 162.9 98 79.6
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 1.2e-38 162.9 90 84.4
FAN01G0191 Fragaria x ananassa HOM05D002030 ORTHO05D004391 1.2e-38 162.9 90 82.2
FAN01G3098 Fragaria x ananassa HOM05D002030 ORTHO05D004391 1.2e-38 162.9 90 82.2
FAN03G0965 Fragaria x ananassa HOM05D002030 ORTHO05D004391 1.2e-38 162.9 90 82.2
FAN10G1580 Fragaria x ananassa HOM05D002030 ORTHO05D004391 1.2e-38 162.9 90 82.2
RcHm_v2.0_Chr1g0313271 Rosa chinensis HOM05D002030 ORTHO05D004391 1.2e-38 162.9 90 82.2
Thecc.01G416600 Theobroma cacao HOM05D002030 ORTHO05D004391 1.2e-38 162.9 90 84.4
Cpa.g.sc189.5 Carica papaya HOM05D002030 ORTHO05D004391 1.6e-38 162.5 90 84.4
Os02g0194100 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D004391 1.6e-38 162.5 90 83.3
Os11g0538900 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D004391 1.6e-38 162.5 90 83.3
Rhsim07G0049800 Rhododendron simsii HOM05D002030 ORTHO05D004391 1.6e-38 162.5 90 84.4
TAR623G1248 Trochodendron aralioides HOM05D002030 ORTHO05D004391 1.6e-38 162.5 90 83.3
TAR633G1299 Trochodendron aralioides HOM05D002030 ORTHO05D004391 1.6e-38 162.5 90 83.3
AUR62011552 Chenopodium quinoa HOM05D002030 ORTHO05D004391 2.1e-38 162.2 91 82.4
AUR62016372 Chenopodium quinoa HOM05D002030 ORTHO05D004391 2.1e-38 162.2 91 82.4
ECA234G1190 Erigeron canadensis HOM05D002030 ORTHO05D004391 2.1e-38 162.2 90 83.3
HanXRQChr16g0520361 Helianthus annuus HOM05D002030 ORTHO05D004391 2.1e-38 162.2 91 82.4
Peaxi162Scf00402g00612 Petunia axillaris HOM05D002030 ORTHO05D004391 2.1e-38 162.2 90 83.3
BcaC02g10111 Brassica carinata HOM05D002030 ORTHO05D004391 2.7e-38 161.8 96 77.1
A04p01870 Brassica napus HOM05D002030 ORTHO05D004391 2.7e-38 161.8 96 77.1
C04p32630 Brassica napus HOM05D002030 ORTHO05D004391 2.7e-38 161.8 96 77.1
BolC4t24830H Brassica oleracea HOM05D002030 ORTHO05D004391 2.7e-38 161.8 96 77.1
BraA04t15910Z Brassica rapa HOM05D002030 ORTHO05D004391 2.7e-38 161.8 96 77.1
PGR044G1446 Punica granatum HOM05D002030 ORTHO05D004391 2.7e-38 161.8 94 79.8
Solyc01g073740.4 Solanum lycopersicum HOM05D002030 ORTHO05D004391 2.7e-38 161.8 91 80.2
Sopen01g033350 Solanum pennellii HOM05D002030 ORTHO05D004391 2.7e-38 161.8 90 82.2
PGSC0003DMG400028982 Solanum tuberosum HOM05D002030 ORTHO05D004391 2.7e-38 161.8 90 82.2
CAN.G129.46 Capsicum annuum HOM05D002030 ORTHO05D004391 3.6e-38 161.4 90 82.2
FvH4_7g00080 Fragaria vesca HOM05D002030 ORTHO05D004391 3.6e-38 161.4 90 81.1
FAN06G4832 Fragaria x ananassa HOM05D002030 ORTHO05D004391 3.6e-38 161.4 90 81.1
Manes.07G000500 Manihot esculenta HOM05D002030 ORTHO05D004391 3.6e-38 161.4 90 84.4
TWI09G1279 Tripterygium wilfordii HOM05D002030 ORTHO05D004391 3.6e-38 161.4 90 83.3
TWI73G0973 Tripterygium wilfordii HOM05D002030 ORTHO05D004391 3.6e-38 161.4 90 83.3
Zm00001eb206100 Zea mays HOM05D002030 ORTHO05D004391 3.6e-38 161.4 90 82.2
Zm00001eb236450 Zea mays HOM05D002030 ORTHO05D004391 3.6e-38 161.4 90 82.2
CARHR170410 Cardamine hirsuta HOM05D002030 ORTHO05D004391 4.6e-38 161.0 96 77.1
Cc02_g26940 Coffea canephora HOM05D002030 ORTHO05D004391 4.6e-38 161.0 90 83.3
MELO3C023506.2 Cucumis melo HOM05D002030 ORTHO05D004391 4.6e-38 161.0 91 81.3
Nitab4.5_0000468g0060 Nicotiana tabacum HOM05D002030 ORTHO05D004391 4.6e-38 161.0 90 82.2
Nitab4.5_0023974g0010 Nicotiana tabacum HOM05D002030 ORTHO05D004391 4.6e-38 161.0 90 82.2
Atru.chr11.2703 Acer truncatum HOM05D002030 ORTHO05D004391 6.1e-38 160.6 91 79.1
CiPaw.16G066900 Carya illinoinensis HOM05D002030 ORTHO05D004391 6.1e-38 160.6 90 82.2
Thhalv10005966m.g Eutrema salsugineum HOM05D002030 ORTHO05D004391 6.1e-38 160.6 96 77.1
Actinidia21583 Actinidia chinensis HOM05D002030 ORTHO05D004391 7.9e-38 160.2 98 78.6
Aa31LG1G25930 Aethionema arabicum HOM05D002030 ORTHO05D004391 7.9e-38 160.2 90 82.2
CsaV3_7G031480 Cucumis sativus L. HOM05D002030 ORTHO05D004391 7.9e-38 160.2 91 80.2
Prupe.2G002900 Prunus persica HOM05D002030 ORTHO05D004391 7.9e-38 160.2 90 81.1
AL5G42300 Arabidopsis lyrata HOM05D002030 ORTHO05D004391 1.0e-37 159.8 93 78.5
Carub.0005s2683 Capsella rubella HOM05D002030 ORTHO05D004391 1.0e-37 159.8 93 78.5
Sed0004903 Sechium edule HOM05D002030 ORTHO05D004391 1.0e-37 159.8 91 79.1
AT3G60100 Arabidopsis thaliana HOM05D002030 ORTHO05D004391 1.4e-37 159.5 90 81.1
CANSAT11G1376 Cannabis sativa HOM05D002030 ORTHO05D004391 1.4e-37 159.5 90 80.0
Haze_03285 Corylus avellana HOM05D002030 ORTHO05D004391 1.4e-37 159.5 91 80.2
QL04p001335 Quercus lobata HOM05D002030 ORTHO05D004391 1.4e-37 159.5 90 82.2
QL04p001534 Quercus lobata HOM05D002030 ORTHO05D004391 1.4e-37 159.5 90 82.2
THA.LOC104817150 Tarenaya hassleriana HOM05D002030 ORTHO05D004391 1.4e-37 159.5 91 79.1
Aa31LG10G14260 Aethionema arabicum HOM05D002030 ORTHO05D004391 1.8e-37 159.1 91 81.3
ATR0006G067 Amborella trichopoda HOM05D002030 ORTHO05D004391 1.8e-37 159.1 90 82.2
CDE06G2277 Ceratophyllum demersum HOM05D002030 ORTHO05D004391 1.8e-37 159.1 90 81.1
ECA248G2977 Erigeron canadensis HOM05D002030 ORTHO05D004391 1.8e-37 159.1 90 82.2
Eucgr.G03412 Eucalyptus grandis HOM05D002030 ORTHO05D004391 1.8e-37 159.1 90 81.1
Actinidia15851 Actinidia chinensis HOM05D002030 ORTHO05D004391 2.3e-37 158.7 98 77.6
Ciclev10031423m.g Citrus clementina HOM05D002030 ORTHO05D004391 2.3e-37 158.7 91 80.2
Actinidia05845 Actinidia chinensis HOM05D002030 ORTHO05D004391 3.0e-37 158.3 90 81.1
EL10Ac9g21933 Beta vulgaris HOM05D002030 ORTHO05D004391 3.0e-37 158.3 91 80.2
Duzib168G0303 Durio zibethinus HOM05D002030 ORTHO05D004391 3.0e-37 158.3 90 82.2
SalBow5G3889 Salvia bowleyana HOM05D002030 ORTHO05D004391 3.0e-37 158.3 90 82.2
Dinv43498 Davidia involucrata HOM05D002030 ORTHO05D004391 3.9e-37 157.9 90 82.2
Migut.N01657 Erythranthe guttata HOM05D002030 ORTHO05D004391 3.9e-37 157.9 98 76.5
Migut.O00475 Erythranthe guttata HOM05D002030 ORTHO05D004391 5.1e-37 157.5 98 76.5
Zm00001eb206090 Zea mays HOM05D002030 ORTHO05D004391 5.1e-37 157.5 90 80.0
AL4G43330 Arabidopsis lyrata HOM05D002030 ORTHO05D004391 6.7e-37 157.1 90 80.0
AT2G44350 Arabidopsis thaliana HOM05D002030 ORTHO05D004391 6.7e-37 157.1 90 80.0
BcaB01g03317 Brassica carinata HOM05D002030 ORTHO05D004391 6.7e-37 157.1 90 80.0
BcaC01g05172 Brassica carinata HOM05D002030 ORTHO05D004391 6.7e-37 157.1 90 80.0
A03p24780 Brassica napus HOM05D002030 ORTHO05D004391 6.7e-37 157.1 90 80.0
C03p29550 Brassica napus HOM05D002030 ORTHO05D004391 6.7e-37 157.1 90 80.0
BolC3t15304H Brassica oleracea HOM05D002030 ORTHO05D004391 6.7e-37 157.1 90 80.0
BraA03t11685Z Brassica rapa HOM05D002030 ORTHO05D004391 6.7e-37 157.1 90 80.0
Carub.0004s2693 Capsella rubella HOM05D002030 ORTHO05D004391 6.7e-37 157.1 90 80.0
MBI01_g01369_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D004391 6.7e-37 157.1 91 79.1
MSTRG.17066 Avicennia marina HOM05D002030 ORTHO05D004391 8.8e-37 156.8 90 81.1
MSTRG.4998 Avicennia marina HOM05D002030 ORTHO05D004391 8.8e-37 156.8 90 81.1
Gohir.A05G160100 Gossypium hirsutum HOM05D002030 ORTHO05D004391 8.8e-37 156.8 90 80.0
Gohir.D05G162800 Gossypium hirsutum HOM05D002030 ORTHO05D004391 8.8e-37 156.8 90 80.0
Gorai.009G167800 Gossypium raimondii HOM05D002030 ORTHO05D004391 8.8e-37 156.8 90 80.0
PSO339G0144 Papaver somniferum HOM05D002030 ORTHO05D004391 8.8e-37 156.8 90 81.1
PSO384G2681 Papaver somniferum HOM05D002030 ORTHO05D004391 8.8e-37 156.8 90 81.1
GSVIVG01001358001 Vitis vinifera HOM05D002030 ORTHO05D004391 8.8e-37 156.8 90 81.1
Hma1.2p1_0293F.1_g116260 Hydrangea macrophylla HOM05D002030 ORTHO05D004391 1.1e-36 156.4 90 81.1
Hma1.2p1_0505F.1_g168140 Hydrangea macrophylla HOM05D002030 ORTHO05D004391 1.1e-36 156.4 90 81.1
MBI04_g33965_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D004391 1.1e-36 156.4 90 78.9
BcaB06g29369 Brassica carinata HOM05D002030 ORTHO05D004391 1.5e-36 156.0 90 78.9
A04p33270 Brassica napus HOM05D002030 ORTHO05D004391 1.5e-36 156.0 90 78.9
C04p70970 Brassica napus HOM05D002030 ORTHO05D004391 1.5e-36 156.0 90 78.9
BolC4t28600H Brassica oleracea HOM05D002030 ORTHO05D004391 1.5e-36 156.0 90 78.9
BraA04t18788Z Brassica rapa HOM05D002030 ORTHO05D004391 1.5e-36 156.0 90 78.9
Thhalv10001384m.g Eutrema salsugineum HOM05D002030 ORTHO05D004391 1.5e-36 156.0 90 78.9
Sp4g26410 Schrenkiella parvula HOM05D002030 ORTHO05D004391 1.5e-36 156.0 90 78.9
SGA_v2.0_scaffold95G28770 Striga asiatica HOM05D002030 ORTHO05D004391 1.5e-36 156.0 90 80.0
HPP92_022742 Vanilla planifolia HOM05D002030 ORTHO05D004391 1.5e-36 156.0 90 80.0
ATR0626G367 Amborella trichopoda HOM05D002030 ORTHO05D004391 2.0e-36 155.6 90 78.9
Aqoxy2G00078 Aquilegia oxysepala HOM05D002030 ORTHO05D004391 2.0e-36 155.6 90 81.1
AagrBONN_evm.TU.Sc2ySwM_228.5639 Anthoceros agrestis HOM05D002030 ORTHO05D004391 2.5e-36 155.2 90 81.1
AagrBONN_evm.TU.Sc2ySwM_117.1175 Anthoceros agrestis HOM05D002030 ORTHO05D004391 3.3e-36 154.8 90 81.1
Mapoly0063s0010 Marchantia polymorpha HOM05D002030 ORTHO05D004391 7.4e-36 153.7 90 76.7
Mapoly0200s0007 Marchantia polymorpha HOM05D002030 ORTHO05D004391 7.4e-36 153.7 90 76.7
Mapoly0216s0011 Marchantia polymorpha HOM05D002030 ORTHO05D004391 7.4e-36 153.7 90 76.7
Mapoly0383s0001 Marchantia polymorpha HOM05D002030 ORTHO05D004391 7.4e-36 153.7 90 76.7
unitig_61.g26437 Utricularia gibba HOM05D002030 ORTHO05D004391 7.4e-36 153.7 90 77.8
Cfa010689 Carpinus fangiana HOM05D002030 ORTHO05D004391 9.7e-36 153.3 91 79.1
SEGI_39166 Sequoiadendron giganteum HOM05D002030 ORTHO05D004391 9.7e-36 153.3 90 76.7
Sed0005598 Sechium edule HOM05D002030 ORTHO05D004391 8.2e-35 150.2 91 74.7
Pp3c13_21410 Physcomitrium patens HOM05D002030 ORTHO05D004391 4.1e-34 147.9 90 74.4
Pp3c1_40030 Physcomitrium patens HOM05D002030 ORTHO05D004391 5.3e-34 147.5 90 74.4
Oeu000987.1 Olea europaea HOM05D002030 ORTHO05D004391 6.9e-34 147.1 90 71.1
SMO118G0428 Selaginella moellendorffii HOM05D002030 ORTHO05D004391 1.5e-33 146.0 90 72.2
Haze_26913 Corylus avellana HOM05D002030 ORTHO05D004391 1.0e-32 143.3 87 71.3
Cre12.g514750 Chlamydomonas reinhardtii HOM05D002030 ORTHO05D004391 1.3e-32 142.9 97 66.0
Oeu032787.1 Olea europaea HOM05D002030 ORTHO05D004391 1.1e-31 139.8 119 60.5
Cfa026498 Carpinus fangiana HOM05D002030 ORTHO05D004391 1.9e-31 139.0 95 67.4
DCAR_029593 Daucus carota HOM05D002030 ORTHO05D004391 7.2e-31 137.1 146 52.1
ATR0626G052 Amborella trichopoda HOM05D002030 ORTHO05D004391 9.4e-31 136.7 82 76.8
CBR_g11008 Chara braunii HOM05D002030 ORTHO05D004391 1.2e-30 136.3 90 66.7
Oeu024931.4 Olea europaea HOM05D002030 ORTHO05D004391 1.6e-30 136.0 126 56.3
PRCOL_00005650 Prasinoderma coloniale HOM05D002030 ORTHO05D004391 8.8e-29 130.2 94 62.8
MCO01G768 Micromonas commoda HOM05D002030 ORTHO05D004391 2.6e-28 128.6 94 62.8
Nn2g15681 Nelumbo nucifera HOM05D002030 ORTHO05D004391 4.4e-28 127.9 82 73.2
Lsat_1_v5_gn_4_46541 Lactuca sativa HOM05D002030 ORTHO05D004391 2.8e-27 125.2 70 82.9
Sabra16G0138000 Salix brachista HOM05D002030 ORTHO05D004391 6.3e-27 124.0 90 67.8
ClCG09G003730 Citrullus lanatus HOM05D002030 ORTHO05D004391 8.2e-27 123.6 91 65.9
Potri.009G023900 Populus trichocarpa HOM05D002030 ORTHO05D028124 1.0e-24 116.7 65 81.5
Cfa027058 Carpinus fangiana HOM05D002030 ORTHO05D004391 3.2e-23 111.7 84 59.5
Mapoly0383s0002 Marchantia polymorpha HOM05D002030 ORTHO05D028124 3.2e-23 111.7 86 62.8
Sp5g03110 Schrenkiella parvula HOM05D002030 ORTHO05D004391 2.7e-22 108.6 96 59.4
Pp3c12_7330 Physcomitrium patens HOM05D002030 ORTHO05D004391 5.7e-20 100.9 90 56.7
Sc02g0003780 Simmondsia chinensis HOM05D002030 ORTHO05D004391 7.0e-18 94.0 48 85.4
SGA_v2.0_scaffold4G02232 Striga asiatica HOM05D002030 ORTHO05D004391 2.0e-17 92.4 54 75.9
CDE07G1107 Ceratophyllum demersum HOM05D002030 ORTHO05D028682 5.9e-17 90.9 48 83.3
Sabra09G0014900 Salix brachista HOM05D002030 ORTHO05D004391 8.0e-14 80.5 64 62.5
unitig_0.g1368 Utricularia gibba HOM05D002030 ORTHO05D004391 8.0e-14 80.5 67 52.2
CARHR139510 Cardamine hirsuta HOM05D002030 ORTHO05D004391 1.4e-10 69.7 35 85.7
TAR636G2333 Trochodendron aralioides HOM05D002030 ORTHO05D004391 7.0e-10 67.4 90 45.6


User provided reference genes

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