Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34128 Trifolium pratense HOM05D006738 ORTHO05D008191 9.8e-63 243.4 135 100.0
Medtr4g031650 Medicago truncatula HOM05D006738 ORTHO05D008191 1.1e-53 213.4 137 88.3
Psat0s2394g0120 Pisum sativum HOM05D006738 ORTHO05D008191 2.0e-52 209.1 134 90.3
Glyma.01G010600 Glycine max HOM05D006738 ORTHO05D008191 3.9e-43 178.3 137 78.8
VMungo1215G3331 Vigna mungo HOM05D006738 ORTHO05D008191 5.6e-42 174.5 134 69.4
Lj3g0020973 Lotus japonicus HOM05D006738 ORTHO05D008191 7.3e-42 174.1 134 67.2
Phvul.002G133500 Phaseolus vulgaris HOM05D006738 ORTHO05D008191 9.5e-42 173.7 134 77.6
QL09p002987 Quercus lobata HOM05D006738 ORTHO05D008191 1.6e-41 172.9 143 65.7
PGSC0003DMG400005175 Solanum tuberosum HOM05D006738 ORTHO05D008191 1.6e-41 172.9 138 65.9
arahy.Tifrunner.gnm1.ann1.WI646Q Arachis hypogaea HOM05D006738 ORTHO05D008191 2.8e-41 172.2 138 66.7
Solyc06g064810.3 Solanum lycopersicum HOM05D006738 ORTHO05D008191 2.8e-41 172.2 138 65.2
Sopen06g023320 Solanum pennellii HOM05D006738 ORTHO05D008191 2.8e-41 172.2 138 65.2
arahy.Tifrunner.gnm1.ann1.67ZQRX Arachis hypogaea HOM05D006738 ORTHO05D008191 2.3e-40 169.1 138 66.7
Nitab4.5_0006564g0050 Nicotiana tabacum HOM05D006738 ORTHO05D008191 2.3e-40 169.1 138 65.2
Lalb_Chr01g0000011 Lupinus albus HOM05D006738 ORTHO05D008191 4.0e-40 168.3 131 74.8
Potri.019G076400 Populus trichocarpa HOM05D006738 ORTHO05D008191 1.2e-39 166.8 140 72.1
QL09p004074 Quercus lobata HOM05D006738 ORTHO05D008191 1.2e-39 166.8 143 72.0
MD15G1400100 Malus domestica HOM05D006738 ORTHO05D008191 1.5e-39 166.4 139 71.9
QL09p004200 Quercus lobata HOM05D006738 ORTHO05D008191 2.0e-39 166.0 143 72.0
Prupe.1G547300 Prunus persica HOM05D006738 ORTHO05D008191 2.6e-39 165.6 139 72.7
Sabra19G0086800 Salix brachista HOM05D006738 ORTHO05D008191 2.6e-39 165.6 140 72.1
THA.LOC104815902 Tarenaya hassleriana HOM05D006738 ORTHO05D008191 3.4e-39 165.2 137 71.5
C06p12150 Brassica napus HOM05D006738 ORTHO05D008191 4.4e-39 164.9 138 62.3
BolC6t36356H Brassica oleracea HOM05D006738 ORTHO05D008191 4.4e-39 164.9 138 62.3
Atru.chr12.822 Acer truncatum HOM05D006738 ORTHO05D008191 5.8e-39 164.5 141 70.9
PGR042G2463 Punica granatum HOM05D006738 ORTHO05D008191 5.8e-39 164.5 138 69.6
COL.COLO4_24620 Corchorus olitorius HOM05D006738 ORTHO05D008191 7.6e-39 164.1 139 71.9
arahy.Tifrunner.gnm1.ann1.H480WY Arachis hypogaea HOM05D006738 ORTHO05D008191 1.3e-38 163.3 134 65.7
MD08G1215600 Malus domestica HOM05D006738 ORTHO05D008191 1.3e-38 163.3 139 71.2
BcaC08g43833 Brassica carinata HOM05D006738 ORTHO05D008191 1.7e-38 162.9 138 61.6
BraA09t38801Z Brassica rapa HOM05D006738 ORTHO05D008191 2.2e-38 162.5 140 62.9
CsaV3_5G040220 Cucumis sativus L. HOM05D006738 ORTHO05D008191 2.9e-38 162.2 139 67.6
TWI14G1101 Tripterygium wilfordii HOM05D006738 ORTHO05D008191 3.8e-38 161.8 138 69.6
MELO3C022198.2 Cucumis melo HOM05D006738 ORTHO05D008191 4.9e-38 161.4 139 72.7
Duzib211G0443 Durio zibethinus HOM05D006738 ORTHO05D008191 4.9e-38 161.4 141 70.2
A09p32610 Brassica napus HOM05D006738 ORTHO05D008191 6.4e-38 161.0 140 62.1
FvH4_5g25840 Fragaria vesca HOM05D006738 ORTHO05D008191 1.9e-37 159.5 142 62.7
FAN18G1689 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.9e-37 159.5 142 62.7
Thecc.08G171800 Theobroma cacao HOM05D006738 ORTHO05D008191 1.9e-37 159.5 140 70.0
FAN08G0599 Fragaria x ananassa HOM05D006738 ORTHO05D008191 2.4e-37 159.1 142 62.7
RcHm_v2.0_Chr7g0216321 Rosa chinensis HOM05D006738 ORTHO05D008191 2.4e-37 159.1 142 63.4
Migut.C01346 Erythranthe guttata HOM05D006738 ORTHO05D008191 5.4e-37 157.9 140 61.4
Cpa.g.sc21.54 Carica papaya HOM05D006738 ORTHO05D008191 7.1e-37 157.5 135 70.4
CiPaw.04G011300 Carya illinoinensis HOM05D006738 ORTHO05D008191 7.1e-37 157.5 141 68.1
Gohir.A05G252100 Gossypium hirsutum HOM05D006738 ORTHO05D008191 7.1e-37 157.5 138 70.3
FAN04G1736 Fragaria x ananassa HOM05D006738 ORTHO05D008191 9.2e-37 157.1 142 62.7
HPP92_002035 Vanilla planifolia HOM05D006738 ORTHO05D008191 1.2e-36 156.8 134 71.6
Gohir.D05G253900 Gossypium hirsutum HOM05D006738 ORTHO05D008191 1.6e-36 156.4 138 69.6
Eucgr.F02960 Eucalyptus grandis HOM05D006738 ORTHO05D008191 2.1e-36 156.0 138 68.8
CSS0018644 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 2.7e-36 155.6 140 62.1
CSS0019392 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 2.7e-36 155.6 140 62.1
AL1G48260 Arabidopsis lyrata HOM05D006738 ORTHO05D008191 4.6e-36 154.8 141 58.9
AT1G33810 Arabidopsis thaliana HOM05D006738 ORTHO05D008191 4.6e-36 154.8 140 60.0
BcaB07g33015 Brassica carinata HOM05D006738 ORTHO05D008191 4.6e-36 154.8 138 68.1
CiPaw.03G017200 Carya illinoinensis HOM05D006738 ORTHO05D008191 6.0e-36 154.5 141 68.1
Haze_13918 Corylus avellana HOM05D006738 ORTHO05D008191 6.0e-36 154.5 146 60.3
Sp1g29140 Schrenkiella parvula HOM05D006738 ORTHO05D008191 1.0e-35 153.7 134 67.2
Manes.02G195900 Manihot esculenta HOM05D006738 ORTHO05D008191 1.3e-35 153.3 143 65.7
Thhalv10009075m.g Eutrema salsugineum HOM05D006738 ORTHO05D008191 1.7e-35 152.9 138 66.7
Oeu048220.2 Olea europaea HOM05D006738 ORTHO05D008191 1.7e-35 152.9 138 70.3
Aa31LG6G8130 Aethionema arabicum HOM05D000065 ORTHO05D000162 2.3e-35 152.5 131 66.4
Sc20g0004710 Simmondsia chinensis HOM05D006738 ORTHO05D008191 2.3e-35 152.5 140 60.0
Ah.01g012440 Amaranthus hybridus HOM05D006738 ORTHO05D008191 3.0e-35 152.1 135 60.0
Sed0003815 Sechium edule HOM05D006738 ORTHO05D008191 3.9e-35 151.8 141 65.2
ECA234G1792 Erigeron canadensis HOM05D006738 ORTHO05D008191 6.6e-35 151.0 140 57.9
PSO782G5196 Papaver somniferum HOM05D006738 ORTHO05D008191 6.6e-35 151.0 138 67.4
CANSAT11G1518 Cannabis sativa HOM05D006738 ORTHO05D008191 8.6e-35 150.6 139 67.6
Ciclev10022763m.g Citrus clementina HOM05D006738 ORTHO05D008191 8.6e-35 150.6 142 64.1
Cc10_g09240 Coffea canephora HOM05D006738 ORTHO05D008191 4.3e-34 148.3 139 67.6
DCAR_002119 Daucus carota HOM05D006738 ORTHO05D008191 5.6e-34 147.9 139 58.3
GSVIVG01025906001 Vitis vinifera HOM05D006738 ORTHO05D008191 7.3e-34 147.5 144 66.7
Aqoxy6G00074 Aquilegia oxysepala HOM05D006738 ORTHO05D008191 9.6e-34 147.1 142 54.2
CDE05G2754 Ceratophyllum demersum HOM05D006738 ORTHO05D008191 9.6e-34 147.1 134 64.2
Lsat_1_v5_gn_5_78501 Lactuca sativa HOM05D006738 ORTHO05D008191 9.6e-34 147.1 137 57.7
PSO170G3684 Papaver somniferum HOM05D006738 ORTHO05D008191 9.6e-34 147.1 139 67.6
SGA_v2.0_scaffold24G10619 Striga asiatica HOM05D006738 ORTHO05D008191 1.2e-33 146.7 139 65.5
EL10Ac9g22957 Beta vulgaris HOM05D006738 ORTHO05D008191 2.1e-33 146.0 141 56.7
CARHR033210 Cardamine hirsuta HOM05D006738 ORTHO05D008191 3.6e-33 145.2 139 64.7
Dinv41794 Davidia involucrata HOM05D006738 ORTHO05D008191 3.6e-33 145.2 142 64.8
Carub.0001s3198 Capsella rubella HOM05D006738 ORTHO05D008191 4.7e-33 144.8 141 65.2
AUR62032974 Chenopodium quinoa HOM05D006738 ORTHO05D008191 6.2e-33 144.4 143 62.9
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 6.2e-33 144.4 141 58.9
Nn5g27492 Nelumbo nucifera HOM05D006738 ORTHO05D008191 4.0e-32 141.7 140 65.7
AUR62017706 Chenopodium quinoa HOM05D006738 ORTHO05D008191 5.2e-32 141.4 137 64.2
ATR1089G071 Amborella trichopoda HOM05D006738 ORTHO05D008191 5.4e-29 131.3 135 63.0
Peaxi162Scf00269g01621 Petunia axillaris HOM05D006738 ORTHO05D008191 5.4e-29 131.3 135 54.8
Lj2A790G37 Lonicera japonica HOM05D006738 ORTHO05D008191 7.1e-29 131.0 115 67.8
Os08g0112600 Oryza sativa ssp. japonica HOM05D006738 ORTHO05D008191 2.7e-28 129.0 143 53.8
QL09p000479 Quercus lobata HOM05D006738 ORTHO05D008191 2.3e-27 125.9 119 62.2
Rhsim07G0068100 Rhododendron simsii HOM05D006738 ORTHO05D008191 3.3e-26 122.1 157 47.8
Gorai.009G265500 Gossypium raimondii HOM05D006738 ORTHO05D008191 4.3e-26 121.7 113 69.9
Medtr4g031845 Medicago truncatula HOM05D006738 ORTHO05D008191 8.1e-25 117.5 66 87.9
QL09p000618 Quercus lobata HOM05D006738 ORTHO05D008191 1.8e-24 116.3 101 65.3
QL09p000342 Quercus lobata HOM05D006738 ORTHO05D008191 2.4e-24 115.9 142 52.8
Cfa008114 Carpinus fangiana HOM05D006738 ORTHO05D008191 3.1e-24 115.5 135 50.4
MBI03_g14516_MAGBIO Magnolia biondii HOM05D006738 ORTHO05D008191 5.3e-24 114.8 98 73.5
Actinidia29399 Actinidia chinensis HOM05D006738 ORTHO05D008191 3.2e-21 105.5 110 63.6
Cc10_g16410 Coffea canephora HOM05D006738 ORTHO05D008191 4.6e-20 101.7 77 64.9
vmacro13762 Vaccinium macrocarpon HOM05D006738 ORTHO05D008191 2.3e-19 99.4 130 46.9
CiPaw.09G026000 Carya illinoinensis HOM05D006738 ORTHO05D008191 5.1e-19 98.2 149 47.7
SEGI_33861 Sequoiadendron giganteum HOM05D006738 ORTHO05D008191 1.9e-18 96.3 114 58.8
SMO118G0306 Selaginella moellendorffii HOM05D006738 ORTHO05D008191 5.6e-18 94.7 138 39.1
Mapoly0047s0047 Marchantia polymorpha HOM05D006738 ORTHO05D008191 2.8e-17 92.4 82 54.9
Zm00001eb260580 Zea mays HOM05D006738 ORTHO05D008191 4.8e-17 91.7 119 56.3
FAN13G2380 Fragaria x ananassa HOM05D006738 ORTHO05D008191 6.9e-16 87.8 140 43.6
AagrBONN_evm.TU.Sc2ySwM_228.5134 Anthoceros agrestis HOM05D006738 ORTHO05D008191 2.0e-15 86.3 124 36.3
Zm00001eb236960 Zea mays HOM05D002538 ORTHO05D008191 2.6e-15 85.9 111 46.8
Glyma.09G210500 Glycine max HOM05D006738 ORTHO05D008191 4.5e-15 85.1 72 62.5
Pp3c3_5650 Physcomitrium patens HOM05D006738 ORTHO05D008191 5.8e-15 84.7 128 36.7
ClCG08G000640 Citrullus lanatus HOM05D006738 ORTHO05D008191 5.5e-13 78.2 76 60.5
QL09p003020 Quercus lobata HOM05D006738 ORTHO05D008191 4.6e-12 75.1 70 55.7
Oeu017736.2 Olea europaea HOM05D006738 ORTHO05D008191 1.0e-11 73.9 86 51.2
HanXRQChr10g0309751 Helianthus annuus HOM05D006738 ORTHO05D008191 3.0e-11 72.4 76 53.9
SHI08988 Sapria himalayana HOM05D006738 ORTHO05D008191 2.4e-08 62.8 80 47.5
CiPaw.16G110800 Carya illinoinensis HOM05D006738 ORTHO05D008191 2.6e-07 59.3 66 50.0
Hma1.2p1_0935F.1_g238700 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 1.3e-06 57.0 42 64.3
Hma1.2p1_0935F.1_g238670 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 3.8e-06 55.5 45 64.4


User provided reference genes

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