Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31014 Trifolium pratense HOM05D000924 ORTHO05D001209 3.4e-77 291.6 147 100.0
CDE06G2318 Ceratophyllum demersum HOM05D000924 ORTHO05D001209 2.3e-09 66.2 88 40.9
Lj3g0017691 Lotus japonicus HOM05D000924 ORTHO05D001209 3.1e-09 65.9 89 38.2
arahy.Tifrunner.gnm1.ann1.1JT8J9 Arachis hypogaea HOM05D000924 ORTHO05D001209 5.2e-09 65.1 87 40.2
arahy.Tifrunner.gnm1.ann1.JY4JA5 Arachis hypogaea HOM05D000924 ORTHO05D001209 5.2e-09 65.1 87 40.2
arahy.Tifrunner.gnm1.ann1.L2QDU1 Arachis hypogaea HOM05D000924 ORTHO05D001209 5.2e-09 65.1 87 40.2
PGR083G1659 Punica granatum HOM05D000924 ORTHO05D001209 5.2e-09 65.1 87 40.2
MSTRG.1010 Avicennia marina HOM05D000924 ORTHO05D001209 6.8e-09 64.7 131 33.6
CANSAT80G1721 Cannabis sativa HOM05D000924 ORTHO05D001209 6.8e-09 64.7 87 40.2
MBI15_g36602_MAGBIO Magnolia biondii HOM05D000924 ORTHO05D001209 6.8e-09 64.7 90 37.8
SGA_v2.0_scaffold161G37860 Striga asiatica HOM05D000924 ORTHO05D001209 6.8e-09 64.7 89 40.4
TWI14G0143 Tripterygium wilfordii HOM05D000924 ORTHO05D001209 6.8e-09 64.7 87 40.2
ATR0605G032 Amborella trichopoda HOM05D000924 ORTHO05D001209 1.2e-08 63.9 87 39.1
CSS0036316 Camellia sinensis var. sinensis HOM05D000924 ORTHO05D001209 1.2e-08 63.9 89 37.1
Peaxi162Scf00064g01426 Petunia axillaris HOM05D000924 ORTHO05D001209 1.2e-08 63.9 131 33.6
Actinidia17090 Actinidia chinensis HOM05D000924 ORTHO05D001209 1.5e-08 63.5 89 38.2
COL.COLO4_18725 Corchorus olitorius HOM05D000924 ORTHO05D001209 1.5e-08 63.5 87 40.2
Lsat_1_v5_gn_3_7441 Lactuca sativa HOM05D000924 ORTHO05D001209 1.5e-08 63.5 87 40.2
Ciclev10010890m.g Citrus clementina HOM05D000924 ORTHO05D001209 2.0e-08 63.2 87 40.2
Duzib128G1905 Durio zibethinus HOM05D000924 ORTHO05D001209 2.0e-08 63.2 87 40.2
ECA246G0163 Erigeron canadensis HOM05D000924 ORTHO05D001209 2.0e-08 63.2 87 39.1
Prupe.6G358100 Prunus persica HOM05D000924 ORTHO05D001209 2.0e-08 63.2 87 39.1
QL04p003238 Quercus lobata HOM05D000924 ORTHO05D001209 2.0e-08 63.2 87 39.1
CiPaw.07G131100 Carya illinoinensis HOM05D000924 ORTHO05D001209 2.6e-08 62.8 87 39.1
Migut.C00343 Erythranthe guttata HOM05D000924 ORTHO05D001209 2.6e-08 62.8 120 32.5
Eucgr.F01825 Eucalyptus grandis HOM05D000924 ORTHO05D001209 2.6e-08 62.8 87 40.2
HanXRQChr17g0533721 Helianthus annuus HOM05D000924 ORTHO05D001209 2.6e-08 62.8 87 39.1
Hma1.2p1_0914F.1_g236150 Hydrangea macrophylla HOM05D000924 ORTHO05D001209 2.6e-08 62.8 87 39.1
Solyc06g082100.4 Solanum lycopersicum HOM05D000924 ORTHO05D001209 2.6e-08 62.8 133 31.6
PGSC0003DMG400030366 Solanum tuberosum HOM05D000924 ORTHO05D001209 2.6e-08 62.8 133 31.6
TAR381G1514 Trochodendron aralioides HOM05D000924 ORTHO05D001209 2.6e-08 62.8 87 40.2
Cpa.g.sc36.108 Carica papaya HOM05D000924 ORTHO05D001209 3.4e-08 62.4 89 37.1
Cc05_g03360 Coffea canephora HOM05D000924 ORTHO05D001209 3.4e-08 62.4 89 37.1
Lj5C314G2 Lonicera japonica HOM05D000924 ORTHO05D001209 3.4e-08 62.4 89 38.2
Psat1g002360 Pisum sativum HOM05D000924 ORTHO05D001209 3.4e-08 62.4 130 34.6
Hund05759 Selenicereus undatus HOM05D000924 ORTHO05D001209 3.4e-08 62.4 87 40.2
GSVIVG01010769001 Vitis vinifera HOM05D000924 ORTHO05D001209 3.4e-08 62.4 87 39.1
CANSAT78G0159 Cannabis sativa HOM05D000924 ORTHO05D001209 4.4e-08 62.0 90 36.7
Cfa014157 Carpinus fangiana HOM05D000924 ORTHO05D001209 4.4e-08 62.0 87 39.1
Ca_03699_v3 Cicer arietinum L. HOM05D000924 ORTHO05D001209 4.4e-08 62.0 87 37.9
Haze_22879 Corylus avellana HOM05D000924 ORTHO05D001209 4.4e-08 62.0 87 39.1
Medtr2g064740 Medicago truncatula HOM05D000924 ORTHO05D001209 4.4e-08 62.0 87 37.9
Os02g0106966 Oryza sativa ssp. japonica HOM05D000924 ORTHO05D001209 4.4e-08 62.0 87 37.9
Sc15g0004020 Simmondsia chinensis HOM05D000924 ORTHO05D001209 4.4e-08 62.0 87 40.2
Ah.01g015930 Amaranthus hybridus HOM05D000924 ORTHO05D001209 5.8e-08 61.6 102 36.3
DCAR_003081 Daucus carota HOM05D000924 ORTHO05D001209 5.8e-08 61.6 89 38.2
Gohir.A10G187300 Gossypium hirsutum HOM05D000924 ORTHO05D001209 5.8e-08 61.6 87 39.1
Gohir.D10G194400 Gossypium hirsutum HOM05D000924 ORTHO05D001209 5.8e-08 61.6 87 39.1
Gorai.011G217300 Gossypium raimondii HOM05D000924 ORTHO05D001209 5.8e-08 61.6 87 39.1
Phvul.005G055300 Phaseolus vulgaris HOM05D000924 ORTHO05D001209 5.8e-08 61.6 87 37.9
THA.LOC104812019 Tarenaya hassleriana HOM05D000924 ORTHO05D001209 5.8e-08 61.6 87 37.9
Thecc.10G149400 Theobroma cacao HOM05D000924 ORTHO05D001209 5.8e-08 61.6 87 39.1
TPR.G10336 Trifolium pratense HOM05D000924 ORTHO05D001209 5.8e-08 61.6 87 37.9
Zm00001eb328850 Zea mays HOM05D000924 ORTHO05D001209 5.8e-08 61.6 87 39.1
EL10Ac2g02545 Beta vulgaris HOM05D000924 ORTHO05D001209 7.5e-08 61.2 87 39.1
MELO3C006732.2 Cucumis melo HOM05D000924 ORTHO05D001209 7.5e-08 61.2 87 37.9
CsaV3_3G015340 Cucumis sativus L. HOM05D000924 ORTHO05D001209 7.5e-08 61.2 87 37.9
Dinv32321 Davidia involucrata HOM05D000924 ORTHO05D001209 7.5e-08 61.2 89 37.1
Lsat_1_v5_gn_3_7501 Lactuca sativa HOM05D000924 ORTHO05D001209 7.5e-08 61.2 87 39.1
Lj5A314T76 Lonicera japonica HOM05D000924 ORTHO05D001209 7.5e-08 61.2 89 37.1
MD04G1240400 Malus domestica HOM05D000924 ORTHO05D001209 7.5e-08 61.2 87 39.1
MD12G1257300 Malus domestica HOM05D000924 ORTHO05D001209 7.5e-08 61.2 87 39.1
Manes.18G005100 Manihot esculenta HOM05D000924 ORTHO05D001209 7.5e-08 61.2 87 39.1
VMungo1080G0748 Vigna mungo HOM05D000924 ORTHO05D001209 7.5e-08 61.2 87 37.9
C03p28130 Brassica napus HOM05D000924 ORTHO05D001209 9.8e-08 60.8 89 37.1
Haze_17095 Corylus avellana HOM05D000924 ORTHO05D001209 9.8e-08 60.8 87 37.9
Glyma.08G173500 Glycine max HOM05D000924 ORTHO05D001209 9.8e-08 60.8 87 37.9
Glyma.15G253800 Glycine max HOM05D000924 ORTHO05D001209 9.8e-08 60.8 87 37.9
Os03g0743800 Oryza sativa ssp. japonica HOM05D000924 ORTHO05D001209 9.8e-08 60.8 90 36.7
Rhsim06G0001600 Rhododendron simsii HOM05D000924 ORTHO05D001209 9.8e-08 60.8 132 30.3
Sopen06g033490 Solanum pennellii HOM05D000924 ORTHO05D001209 9.8e-08 60.8 87 37.9
TPR.G25887 Trifolium pratense HOM05D000924 ORTHO05D001209 9.8e-08 60.8 87 37.9
unitig_26.g9847 Utricularia gibba HOM05D000924 ORTHO05D001209 9.8e-08 60.8 91 38.5
CAN.G1095.6 Capsicum annuum HOM05D000924 ORTHO05D001209 1.3e-07 60.5 133 30.8
ClCG05G006710 Citrullus lanatus HOM05D000924 ORTHO05D001209 1.3e-07 60.5 87 37.9
COL.COLO4_20702 Corchorus olitorius HOM05D000924 ORTHO05D001209 1.3e-07 60.5 87 39.1
FvH4_5g21940 Fragaria vesca HOM05D000924 ORTHO05D001209 1.7e-07 60.1 87 37.9
FAN08G2720 Fragaria x ananassa HOM05D000924 ORTHO05D001209 1.7e-07 60.1 87 37.9
FAN13G1554 Fragaria x ananassa HOM05D000924 ORTHO05D001209 1.7e-07 60.1 87 37.9
FAN18G2116 Fragaria x ananassa HOM05D000924 ORTHO05D001209 1.7e-07 60.1 87 37.9
Nitab4.5_0007467g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 1.7e-07 60.1 127 31.5
QL10p013857 Quercus lobata HOM05D000924 ORTHO05D001209 1.7e-07 60.1 87 37.9
SEGI_03458 Sequoiadendron giganteum HOM05D000924 ORTHO05D001209 1.7e-07 60.1 87 39.1
Aqoxy3G02568 Aquilegia oxysepala HOM05D000924 ORTHO05D001209 2.2e-07 59.7 88 39.8
BcaB03g11743 Brassica carinata HOM05D000924 ORTHO05D001209 2.2e-07 59.7 89 38.2
CDE07G1660 Ceratophyllum demersum HOM05D000924 ORTHO05D001209 2.2e-07 59.7 88 38.6
Medtr4g011450 Medicago truncatula HOM05D000924 ORTHO05D001209 2.2e-07 59.7 87 39.1
Nitab4.5_0003811g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 2.2e-07 59.7 85 40.0
SEGI_01233 Sequoiadendron giganteum HOM05D000924 ORTHO05D001209 2.2e-07 59.7 87 39.1
Dinv10292 Davidia involucrata HOM05D000924 ORTHO05D001209 2.9e-07 59.3 89 37.1
Sed0004818 Sechium edule HOM05D000924 ORTHO05D001209 2.9e-07 59.3 87 37.9
BolC3t15183H Brassica oleracea HOM05D000924 ORTHO05D001209 3.7e-07 58.9 89 36.0
Medtr2g030875 Medicago truncatula HOM05D000924 ORTHO05D001209 3.7e-07 58.9 128 33.6
Medtr2g031250 Medicago truncatula HOM05D000924 ORTHO05D001209 3.7e-07 58.9 128 33.6
Nitab4.5_0000110g0580 Nicotiana tabacum HOM05D000924 ORTHO05D001209 3.7e-07 58.9 85 40.0
Nitab4.5_0005694g0030 Nicotiana tabacum HOM05D000924 ORTHO05D001209 3.7e-07 58.9 85 38.8
Nitab4.5_0008569g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 3.7e-07 58.9 85 38.8
Potri.015G095500 Populus trichocarpa HOM05D000924 ORTHO05D001209 3.7e-07 58.9 87 34.5
RcHm_v2.0_Chr7g0209461 Rosa chinensis HOM05D000924 ORTHO05D001209 3.7e-07 58.9 87 37.9
TAR369G0929 Trochodendron aralioides HOM05D000924 ORTHO05D001209 3.7e-07 58.9 87 39.1
AT1G20960 Arabidopsis thaliana HOM05D000924 ORTHO05D001209 4.9e-07 58.5 86 38.4
BcaC06g34852 Brassica carinata HOM05D000924 ORTHO05D001209 4.9e-07 58.5 89 39.3
A02p10320 Brassica napus HOM05D000924 ORTHO05D001209 4.9e-07 58.5 89 39.3
A07p15350 Brassica napus HOM05D000924 ORTHO05D001209 4.9e-07 58.5 89 39.3
C02p17050 Brassica napus HOM05D000924 ORTHO05D001209 4.9e-07 58.5 89 39.3
C07p22650 Brassica napus HOM05D000924 ORTHO05D001209 4.9e-07 58.5 89 39.3
BolC2t07803H Brassica oleracea HOM05D000924 ORTHO05D001209 4.9e-07 58.5 89 39.3
BolC7t42794H Brassica oleracea HOM05D000924 ORTHO05D001209 4.9e-07 58.5 89 39.3
BraA02t06099Z Brassica rapa HOM05D000924 ORTHO05D001209 4.9e-07 58.5 89 39.3
BraA07t29275Z Brassica rapa HOM05D000924 ORTHO05D001209 4.9e-07 58.5 89 39.3
Aa31LG7G5140 Aethionema arabicum HOM05D000924 ORTHO05D001209 6.4e-07 58.2 86 37.2
AL1G33990 Arabidopsis lyrata HOM05D000924 ORTHO05D001209 6.4e-07 58.2 86 38.4
Mapoly0043s0081 Marchantia polymorpha HOM05D000924 ORTHO05D001209 6.4e-07 58.2 88 37.5
BcaC01g05308 Brassica carinata HOM05D000924 ORTHO05D001209 8.3e-07 57.8 89 34.8
Thhalv10006525m.g Eutrema salsugineum HOM05D000924 ORTHO05D001209 8.3e-07 57.8 86 38.4
Lalb_Chr25g0285181 Lupinus albus HOM05D000924 ORTHO05D001209 8.3e-07 57.8 86 36.0
SHI31129 Sapria himalayana HOM05D000924 ORTHO05D001209 8.3e-07 57.8 87 36.8
BraA08t33566Z Brassica rapa HOM05D000924 ORTHO05D001209 1.1e-06 57.4 88 37.5
Cc02_g28440 Coffea canephora HOM05D000924 ORTHO05D001209 1.1e-06 57.4 89 36.0
HanXRQChr12g0359471 Helianthus annuus HOM05D000924 ORTHO05D001209 1.1e-06 57.4 86 39.5
Nn6g31594 Nelumbo nucifera HOM05D000924 ORTHO05D001209 1.1e-06 57.4 87 34.5
Nitab4.5_0002503g0090 Nicotiana tabacum HOM05D000924 ORTHO05D001209 1.1e-06 57.4 85 38.8
BcaB03g14290 Brassica carinata HOM05D000924 ORTHO05D001209 1.4e-06 57.0 89 38.2
CARHR021420 Cardamine hirsuta HOM05D000924 ORTHO05D001209 1.4e-06 57.0 86 37.2
Sabra15G0116500 Salix brachista HOM05D000924 ORTHO05D001209 1.4e-06 57.0 87 33.3
AL4G40630 Arabidopsis lyrata HOM05D000924 ORTHO05D001209 1.9e-06 56.6 122 30.3
ClCG05G013070 Citrullus lanatus HOM05D000924 ORTHO05D001209 1.9e-06 56.6 87 35.6
Carub.0001s2043 Capsella rubella HOM05D000924 ORTHO05D001209 2.4e-06 56.2 86 37.2
ECA232G3463 Erigeron canadensis HOM05D000924 ORTHO05D001209 2.4e-06 56.2 124 29.8
Lsat_1_v5_gn_4_157361 Lactuca sativa HOM05D000924 ORTHO05D001209 2.4e-06 56.2 90 34.4
Potri.012G097300 Populus trichocarpa HOM05D000924 ORTHO05D001209 2.4e-06 56.2 87 33.3
Sp1g18660 Schrenkiella parvula HOM05D000924 ORTHO05D001209 2.4e-06 56.2 89 37.1
TPR.G10348 Trifolium pratense HOM05D000924 ORTHO05D001209 2.4e-06 56.2 126 32.5
AUR62032373 Chenopodium quinoa HOM05D000924 ORTHO05D001209 3.2e-06 55.8 88 39.8
Ciclev10004124m.g Citrus clementina HOM05D000924 ORTHO05D001209 3.2e-06 55.8 86 34.9
PSO782G5199 Papaver somniferum HOM05D000924 ORTHO05D001209 3.2e-06 55.8 89 40.4
SMO347G0607 Selaginella moellendorffii HOM05D000924 ORTHO05D001209 3.2e-06 55.8 90 32.2
AT2G42270 Arabidopsis thaliana HOM05D000924 ORTHO05D001209 4.1e-06 55.5 88 35.2
AUR62024846 Chenopodium quinoa HOM05D000924 ORTHO05D001209 5.4e-06 55.1 87 39.1
A02p22840 Brassica napus HOM05D000924 ORTHO05D001209 7.0e-06 54.7 87 37.9
BolC2t09659H Brassica oleracea HOM05D000924 ORTHO05D001209 7.0e-06 54.7 87 37.9
CBR_g70690 Chara braunii HOM05D000924 ORTHO05D001209 9.2e-06 54.3 87 32.2
ClCG11G018370 Citrullus lanatus HOM05D000924 ORTHO05D001209 9.2e-06 54.3 87 35.6
vmacro14714 Vaccinium macrocarpon HOM05D000924 ORTHO05D001209 9.2e-06 54.3 87 34.5


User provided reference genes

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