Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2574 Trifolium pratense HOM05D000018 ORTHO05D008577 2.4e-78 295.4 146 100.0
TPR.G37381 Trifolium pratense HOM05D000018 ORTHO05D008577 1.3e-41 173.3 161 60.2
Psat5g146680 Pisum sativum HOM05D000018 ORTHO05D008577 1.3e-36 156.8 159 57.9
Ca_15097_v3 Cicer arietinum L. HOM05D000018 ORTHO05D008577 8.5e-36 154.1 159 56.6
Phvul.006G083200 Phaseolus vulgaris HOM05D000018 ORTHO05D008577 2.5e-32 142.5 162 48.8
Medtr3g063180 Medicago truncatula HOM05D000018 ORTHO05D008577 2.8e-31 139.0 161 50.9
VMungo0540G2221 Vigna mungo HOM05D000018 ORTHO05D008577 3.7e-31 138.7 162 49.4
Glyma.18G048300 Glycine max HOM05D000018 ORTHO05D008577 4.8e-31 138.3 158 52.5
Lalb_Chr18g0053971 Lupinus albus HOM05D000018 ORTHO05D008577 3.4e-29 132.1 161 48.4
Lj6g0027835 Lotus japonicus HOM05D000018 ORTHO05D008577 4.5e-29 131.7 162 51.2
arahy.Tifrunner.gnm1.ann1.JK36JM Arachis hypogaea HOM05D000018 ORTHO05D008577 4.2e-27 125.2 162 48.1
arahy.Tifrunner.gnm1.ann1.HP8L6T Arachis hypogaea HOM05D000018 ORTHO05D008577 7.2e-27 124.4 162 48.1
Glyma.11G202600 Glycine max HOM05D000018 ORTHO05D008577 7.2e-27 124.4 144 51.4
Lj1C1149T12 Lonicera japonica HOM05D000018 ORTHO05D008577 1.5e-24 116.7 157 45.2
Sc07g0001880 Simmondsia chinensis HOM05D000018 ORTHO05D008577 9.7e-24 114.0 150 46.7
CiPaw.06G002600 Carya illinoinensis HOM05D000018 ORTHO05D008577 1.7e-23 113.2 156 43.6
AUR62003550 Chenopodium quinoa HOM05D000018 ORTHO05D008577 2.2e-23 112.8 157 46.5
Manes.16G000500 Manihot esculenta HOM05D000018 ORTHO05D008577 2.2e-23 112.8 142 47.9
QL09p020541 Quercus lobata HOM05D000018 ORTHO05D008577 2.8e-23 112.5 150 44.7
PSO541G2768 Papaver somniferum HOM05D000018 ORTHO05D008577 4.8e-23 111.7 142 45.1
Potri.011G024100 Populus trichocarpa HOM05D000018 ORTHO05D008577 4.8e-23 111.7 144 45.1
DCAR_017900 Daucus carota HOM05D000018 ORTHO05D008577 6.3e-23 111.3 150 46.0
Sabra11G0015100 Salix brachista HOM05D000018 ORTHO05D008577 6.3e-23 111.3 144 44.4
AUR62017864 Chenopodium quinoa HOM05D000018 ORTHO05D008577 8.2e-23 110.9 157 43.9
Duzib170G0451 Durio zibethinus HOM05D000018 ORTHO05D008577 8.2e-23 110.9 157 47.1
PSO675G8413 Papaver somniferum HOM05D000018 ORTHO05D008577 8.2e-23 110.9 142 45.1
GSVIVG01015908001 Vitis vinifera HOM05D000018 ORTHO05D008577 8.2e-23 110.9 157 46.5
Cfa010954 Carpinus fangiana HOM05D000018 ORTHO05D008577 1.4e-22 110.2 142 44.4
Cc09_g04410 Coffea canephora HOM05D000018 ORTHO05D008577 1.4e-22 110.2 142 47.9
Hund04394 Selenicereus undatus HOM05D000018 ORTHO05D008577 1.4e-22 110.2 157 43.3
Thecc.07G099000 Theobroma cacao HOM05D000018 ORTHO05D008577 1.4e-22 110.2 157 45.9
Cc09_g04430 Coffea canephora HOM05D000018 ORTHO05D008577 4.1e-22 108.6 142 47.2
PGR031G0591 Punica granatum HOM05D000018 ORTHO05D008577 5.3e-22 108.2 150 44.7
Aa31LG2G12360 Aethionema arabicum HOM05D000018 ORTHO05D008577 9.1e-22 107.5 142 46.5
Nn1g09857 Nelumbo nucifera HOM05D000018 ORTHO05D008577 9.1e-22 107.5 142 44.4
Gohir.D01G047200 Gossypium hirsutum HOM05D000018 ORTHO05D008577 1.5e-21 106.7 157 42.7
Gorai.002G066700 Gossypium raimondii HOM05D000018 ORTHO05D008577 1.5e-21 106.7 157 42.7
Oeu058896.1 Olea europaea HOM05D000018 ORTHO05D008577 1.5e-21 106.7 157 43.3
SalBow2G2622 Salvia bowleyana HOM05D000018 ORTHO05D008577 1.5e-21 106.7 157 41.4
ECA246G2837 Erigeron canadensis HOM05D000018 ORTHO05D008577 2.0e-21 106.3 151 45.7
Gohir.A01G060700 Gossypium hirsutum HOM05D000018 ORTHO05D008577 2.0e-21 106.3 157 42.7
THA.LOC104806661 Tarenaya hassleriana HOM05D000018 ORTHO05D008577 2.0e-21 106.3 144 45.1
Ah.02g121280 Amaranthus hybridus HOM05D000018 ORTHO05D008577 3.4e-21 105.5 153 43.8
TWI32G0578 Tripterygium wilfordii HOM05D000018 ORTHO05D008577 3.4e-21 105.5 156 42.9
TAR624G0388 Trochodendron aralioides HOM05D000018 ORTHO05D008577 4.5e-21 105.1 142 44.4
TAR624G0490 Trochodendron aralioides HOM05D000018 ORTHO05D008577 4.5e-21 105.1 142 44.4
CAN.G465.7 Capsicum annuum HOM05D000018 ORTHO05D008577 5.9e-21 104.8 157 42.7
MELO3C016225.2 Cucumis melo HOM05D000018 ORTHO05D008577 5.9e-21 104.8 152 44.7
CSS0008204 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D008577 7.7e-21 104.4 157 43.3
Carub.0007s2521 Capsella rubella HOM05D000018 ORTHO05D008577 7.7e-21 104.4 149 45.0
SGA_v2.0_scaffold258G45783 Striga asiatica HOM05D000018 ORTHO05D008577 7.7e-21 104.4 147 42.9
vmacro03178 Vaccinium macrocarpon HOM05D000018 ORTHO05D008577 1.3e-20 103.6 157 42.0
AL7G38720 Arabidopsis lyrata HOM05D000018 ORTHO05D008577 1.7e-20 103.2 149 45.0
CARHR222690 Cardamine hirsuta HOM05D000018 ORTHO05D008577 1.7e-20 103.2 149 45.0
Cpa.g.sc146.35 Carica papaya HOM05D000018 ORTHO05D008577 2.2e-20 102.8 142 43.0
Sed0019427 Sechium edule HOM05D000018 ORTHO05D008577 2.2e-20 102.8 155 43.2
MSTRG.458 Avicennia marina HOM05D000018 ORTHO05D008577 5.0e-20 101.7 142 42.3
CANSAT54G0470 Cannabis sativa HOM05D000018 ORTHO05D008577 5.0e-20 101.7 151 43.7
ClCG07G011030 Citrullus lanatus HOM05D000018 ORTHO05D008577 5.0e-20 101.7 155 42.6
Dinv06252 Davidia involucrata HOM05D000018 ORTHO05D008577 6.5e-20 101.3 157 41.4
Dinv15526 Davidia involucrata HOM05D000018 ORTHO05D008577 6.5e-20 101.3 157 41.4
AT4G16330 Arabidopsis thaliana HOM05D000018 ORTHO05D008577 8.5e-20 100.9 149 44.3
Atru.chr8.1037 Acer truncatum HOM05D000018 ORTHO05D008577 1.1e-19 100.5 144 41.7
Sopen10g001140 Solanum pennellii HOM05D000018 ORTHO05D008577 1.1e-19 100.5 157 40.8
BraA01t02034Z Brassica rapa HOM05D000018 ORTHO05D008577 1.4e-19 100.1 142 43.7
Haze_02985 Corylus avellana HOM05D000018 ORTHO05D008577 1.4e-19 100.1 66 69.7
BcaNung00208 Brassica carinata HOM05D000018 ORTHO05D008577 2.5e-19 99.4 142 42.3
Migut.K01063 Erythranthe guttata HOM05D000018 ORTHO05D008577 2.5e-19 99.4 157 39.5
C01p26590 Brassica napus HOM05D000018 ORTHO05D008577 3.2e-19 99.0 142 43.0
Thhalv10025637m.g Eutrema salsugineum HOM05D000018 ORTHO05D008577 3.2e-19 99.0 142 44.4
Eucgr.B01527 Eucalyptus grandis HOM05D000018 ORTHO05D008577 4.2e-19 98.6 142 42.3
Lsat_1_v5_gn_5_139101 Lactuca sativa HOM05D000018 ORTHO05D008577 4.2e-19 98.6 160 40.0
Sp7g14840 Schrenkiella parvula HOM05D000018 ORTHO05D008577 4.2e-19 98.6 142 43.0
BolC1t02601H Brassica oleracea HOM05D000018 ORTHO05D008577 5.5e-19 98.2 142 43.0
Solyc10g005120.2 Solanum lycopersicum HOM05D000018 ORTHO05D008577 9.4e-19 97.4 157 40.1
Nitab4.5_0004778g0010 Nicotiana tabacum HOM05D000018 ORTHO05D008577 1.2e-18 97.1 157 39.5
BcaC09g50328 Brassica carinata HOM05D000018 ORTHO05D008577 1.6e-18 96.7 142 42.3
HanXRQChr17g0538911 Helianthus annuus HOM05D000018 ORTHO05D008577 1.6e-18 96.7 158 41.1
CsaV3_4G007210 Cucumis sativus L. HOM05D000018 ORTHO05D008577 2.1e-18 96.3 68 67.6
A01p21270 Brassica napus HOM05D000018 ORTHO05D008577 2.7e-18 95.9 142 42.3
Aqoxy1G01349 Aquilegia oxysepala HOM05D000018 ORTHO05D008577 4.7e-18 95.1 142 44.4
Aqoxy1G01352 Aquilegia oxysepala HOM05D000018 ORTHO05D008577 4.7e-18 95.1 142 44.4
Peaxi162Scf00888g00113 Petunia axillaris HOM05D000018 ORTHO05D008577 8.0e-18 94.4 150 39.3
QL11p018093 Quercus lobata HOM05D007400 ORTHO05D009351 8.0e-18 94.4 74 63.5
SEGI_11697 Sequoiadendron giganteum HOM05D000018 ORTHO05D008577 1.0e-17 94.0 143 38.5
PGSC0003DMG401011292 Solanum tuberosum HOM05D000018 ORTHO05D008577 1.8e-17 93.2 171 36.8
Rhsim13G0235600 Rhododendron simsii HOM05D000018 ORTHO05D008577 2.3e-17 92.8 139 41.0
Aqoxy106s002 Aquilegia oxysepala HOM05D000018 ORTHO05D008577 3.0e-17 92.4 140 43.6
HPP92_027381 Vanilla planifolia HOM05D000018 ORTHO05D008577 8.8e-17 90.9 142 40.1
Os06g0162500 Oryza sativa ssp. japonica HOM05D000018 ORTHO05D008577 2.6e-16 89.4 142 40.1
CDE02G0534 Ceratophyllum demersum HOM05D000018 ORTHO05D008577 3.3e-16 89.0 141 39.0
RcHm_v2.0_Chr2g0152971 Rosa chinensis HOM05D000018 ORTHO05D008577 4.4e-16 88.6 151 38.4
FAN05G1045 Fragaria x ananassa HOM05D000018 ORTHO05D008577 1.3e-15 87.0 151 38.4
AagrBONN_evm.TU.Sc2ySwM_228.3220 Anthoceros agrestis HOM05D000018 ORTHO05D008577 1.7e-15 86.7 67 59.7
FAN02G4377 Fragaria x ananassa HOM05D000018 ORTHO05D008577 1.7e-15 86.7 151 37.7
Ciclev10012063m.g Citrus clementina HOM05D000018 ORTHO05D008577 2.8e-15 85.9 158 36.1
FvH4_6g39151 Fragaria vesca HOM05D000018 ORTHO05D008577 3.7e-15 85.5 151 37.7
FAN09G0763 Fragaria x ananassa HOM05D000018 ORTHO05D008577 3.7e-15 85.5 151 37.7
FAN14G4789 Fragaria x ananassa HOM05D000018 ORTHO05D008577 3.7e-15 85.5 151 37.7
Zm00001eb375840 Zea mays HOM05D000018 ORTHO05D008577 3.7e-15 85.5 142 38.7
MD09G1144700 Malus domestica HOM05D000018 ORTHO05D008577 8.2e-15 84.3 151 37.7
Mapoly0043s0013 Marchantia polymorpha HOM05D000018 ORTHO05D008577 3.5e-13 79.0 152 31.6
Pp3c4_3409 Physcomitrium patens HOM05D000018 ORTHO05D008577 2.2e-12 76.3 149 32.9
Pp3c4_3410 Physcomitrium patens HOM05D000018 ORTHO05D008577 2.2e-12 76.3 149 32.9
SMO116G0233 Selaginella moellendorffii HOM05D000018 ORTHO05D008577 3.2e-11 72.4 67 55.2
EL10Ac6g15328 Beta vulgaris HOM05D000018 ORTHO05D008577 1.8e-09 66.6 112 42.0
CDE10G0868 Ceratophyllum demersum HOM05D000018 ORTHO05D001513 2.0e-08 63.2 104 37.5
HPP92_019981 Vanilla planifolia HOM05D000018 ORTHO05D008577 2.6e-08 62.8 49 57.1
CDE10G0788 Ceratophyllum demersum HOM05D000018 ORTHO05D001513 3.3e-08 62.4 145 29.7
Prupe.3G183300 Prunus persica HOM05D000018 ORTHO05D008577 3.3e-08 62.4 46 60.9
DCAR_018700 Daucus carota HOM05D000018 ORTHO05D001513 2.8e-07 59.3 151 27.2
SEGI_24290 Sequoiadendron giganteum HOM05D000018 ORTHO05D001513 6.3e-07 58.2 145 26.9
SEGI_12012 Sequoiadendron giganteum HOM05D000018 ORTHO05D000453 1.4e-06 57.0 67 46.3
Hund11541 Selenicereus undatus HOM05D000018 ORTHO05D006467 2.4e-06 56.2 63 42.9
TWI81G0971 Tripterygium wilfordii HOM05D000018 ORTHO05D006467 2.4e-06 56.2 63 42.9
Actinidia29095 Actinidia chinensis HOM05D000018 ORTHO05D001513 3.1e-06 55.8 150 28.0
PGR031G0504 Punica granatum HOM05D000018 ORTHO05D001513 3.1e-06 55.8 145 26.9
TWI15G0066 Tripterygium wilfordii HOM05D000018 ORTHO05D006467 3.1e-06 55.8 63 42.9
Ca_05968_v3 Cicer arietinum L. HOM05D000018 ORTHO05D001513 4.1e-06 55.5 151 24.5
Dinv14677 Davidia involucrata HOM05D000787 ORTHO05D003730 4.1e-06 55.5 148 28.4
Eucgr.K02978 Eucalyptus grandis HOM05D000018 ORTHO05D001513 4.1e-06 55.5 144 27.8
SEGI_38449 Sequoiadendron giganteum HOM05D000018 ORTHO05D000453 4.1e-06 55.5 67 43.3
TAR636G1246 Trochodendron aralioides HOM05D000018 ORTHO05D006467 4.1e-06 55.5 64 40.6
Actinidia05363 Actinidia chinensis HOM05D000018 ORTHO05D001513 5.3e-06 55.1 65 44.6
Actinidia11580 Actinidia chinensis HOM05D000018 ORTHO05D001513 5.3e-06 55.1 150 27.3
Ciclev10020815m.g Citrus clementina HOM05D000018 ORTHO05D006467 5.3e-06 55.1 63 39.7
DCAR_028857 Daucus carota HOM05D000018 ORTHO05D001513 5.3e-06 55.1 82 37.8
Nitab4.5_0014731g0010 Nicotiana tabacum HOM05D000018 ORTHO05D000453 5.3e-06 55.1 140 28.6
SMO201G0033 Selaginella moellendorffii HOM05D000018 ORTHO05D001513 5.3e-06 55.1 68 42.6
Nitab4.5_0000021g0010 Nicotiana tabacum HOM05D000018 ORTHO05D000453 9.1e-06 54.3 140 28.6
Potri.003G119100 Populus trichocarpa HOM05D000018 ORTHO05D006467 9.1e-06 54.3 63 41.3
QL02p027162 Quercus lobata HOM05D000018 ORTHO05D000453 9.1e-06 54.3 75 41.3
vmacro20285 Vaccinium macrocarpon HOM05D000018 ORTHO05D001513 9.1e-06 54.3 63 42.9


User provided reference genes

Program Settings