Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24425 Trifolium pratense HOM05D006567 ORTHO05D411483 4.6e-32 140.6 70 100.0
TPR.G40300 Trifolium pratense HOM05D006567 ORTHO05D412752 7.9e-32 139.8 70 98.6
TPR.G2696 Trifolium pratense HOM05D006567 ORTHO05D411767 9.4e-25 116.3 61 93.4
TPR.G2679 Trifolium pratense HOM05D006567 ORTHO05D412848 2.1e-24 115.2 62 91.9
Medtr4g100760 Medicago truncatula HOM05D006567 ORTHO05D009430 2.1e-16 88.6 54 79.6
TPR.G37608 Trifolium pratense HOM05D006567 ORTHO05D009430 8.0e-16 86.7 54 77.8
Lalb_Chr05g0221201 Lupinus albus HOM05D006567 ORTHO05D009430 2.3e-15 85.1 54 75.9
COL.COLO4_37145 Corchorus olitorius HOM05D006567 ORTHO05D009430 3.9e-15 84.3 54 74.1
Ca_21975_v3 Cicer arietinum L. HOM05D006567 ORTHO05D009430 5.2e-15 84.0 54 75.9
Lj4g0021343 Lotus japonicus HOM05D006567 ORTHO05D009430 5.2e-15 84.0 54 75.9
PGR031G0713 Punica granatum HOM05D006567 ORTHO05D009430 8.8e-15 83.2 54 75.9
arahy.Tifrunner.gnm1.ann1.69E4XE Arachis hypogaea HOM05D006567 ORTHO05D009430 1.1e-14 82.8 54 74.1
arahy.Tifrunner.gnm1.ann1.E0WBQ7 Arachis hypogaea HOM05D006567 ORTHO05D009430 1.1e-14 82.8 54 74.1
Glyma.05G061300 Glycine max HOM05D006567 ORTHO05D009430 1.1e-14 82.8 54 72.2
CSS0024870 Camellia sinensis var. sinensis HOM05D006567 ORTHO05D009430 1.5e-14 82.4 54 72.2
HanXRQChr13g0417851 Helianthus annuus HOM05D006567 ORTHO05D009430 2.6e-14 81.6 54 68.5
ECA240G4587 Erigeron canadensis HOM05D006567 ORTHO05D009430 3.3e-14 81.3 54 70.4
Gohir.D12G218600 Gossypium hirsutum HOM05D006567 ORTHO05D009430 3.3e-14 81.3 54 72.2
Gorai.008G234200 Gossypium raimondii HOM05D006567 ORTHO05D009430 3.3e-14 81.3 54 72.2
PSO017G4082 Papaver somniferum HOM05D006567 ORTHO05D009430 3.3e-14 81.3 55 67.3
Ciclev10020637m.g Citrus clementina HOM05D006567 ORTHO05D009430 4.4e-14 80.9 54 72.2
Gohir.A12G216000 Gossypium hirsutum HOM05D006567 ORTHO05D009430 4.4e-14 80.9 54 70.4
Lsat_1_v5_gn_6_92541 Lactuca sativa HOM05D006567 ORTHO05D009430 4.4e-14 80.9 54 70.4
VMungo0251G1330 Vigna mungo HOM05D006567 ORTHO05D009430 4.4e-14 80.9 54 74.1
MSTRG.12113 Avicennia marina HOM05D006567 ORTHO05D009430 5.7e-14 80.5 55 65.5
Duzib084G0744 Durio zibethinus HOM05D006567 ORTHO05D009430 5.7e-14 80.5 54 72.2
Phvul.003G221900 Phaseolus vulgaris HOM05D006567 ORTHO05D009430 5.7e-14 80.5 54 72.2
Rhsim09G0000200 Rhododendron simsii HOM05D006567 ORTHO05D009430 5.7e-14 80.5 54 70.4
vmacro00188 Vaccinium macrocarpon HOM05D006567 ORTHO05D009430 5.7e-14 80.5 54 70.4
Actinidia14413 Actinidia chinensis HOM05D006567 ORTHO05D009430 7.4e-14 80.1 54 72.2
Psat4g072680 Pisum sativum HOM05D006567 ORTHO05D009430 9.7e-14 79.7 54 74.1
TWI81G0123 Tripterygium wilfordii HOM05D006567 ORTHO05D009430 9.7e-14 79.7 54 70.4
Solyc08g078460.3 Solanum lycopersicum HOM05D006567 ORTHO05D009430 1.3e-13 79.3 54 68.5
Hund11604 Selenicereus undatus HOM05D006567 ORTHO05D009430 1.7e-13 79.0 54 70.4
Eucgr.D02095 Eucalyptus grandis HOM05D006567 ORTHO05D009430 2.2e-13 78.6 54 68.5
Atru.chr9.1289 Acer truncatum HOM05D006567 ORTHO05D009430 2.8e-13 78.2 54 68.5
MD04G1062400 Malus domestica HOM05D006567 ORTHO05D009430 2.8e-13 78.2 54 70.4
Manes.01G082300 Manihot esculenta HOM05D006567 ORTHO05D009430 2.8e-13 78.2 54 72.2
PSO170G1323 Papaver somniferum HOM05D006567 ORTHO05D009430 2.8e-13 78.2 54 66.7
PGSC0003DMG400004822 Solanum tuberosum HOM05D006567 ORTHO05D009430 2.8e-13 78.2 54 66.7
Ah.12g054200 Amaranthus hybridus HOM05D006567 ORTHO05D006679 3.7e-13 77.8 54 68.5
Prupe.5G066000 Prunus persica HOM05D006567 ORTHO05D009430 3.7e-13 77.8 54 70.4
Sabra03G0048700 Salix brachista HOM05D006567 ORTHO05D009430 3.7e-13 77.8 54 70.4
TAR636G1533 Trochodendron aralioides HOM05D006567 ORTHO05D009430 3.7e-13 77.8 54 70.4
unitig_899.g15594 Utricularia gibba HOM05D006567 ORTHO05D009430 3.7e-13 77.8 54 66.7
Aqoxy7G00822 Aquilegia oxysepala HOM05D006567 ORTHO05D009430 4.8e-13 77.4 54 66.7
EL10Ac5g12369 Beta vulgaris HOM05D006567 ORTHO05D009430 4.8e-13 77.4 54 66.7
EL10Ac5g12374 Beta vulgaris HOM05D006567 ORTHO05D009430 4.8e-13 77.4 54 66.7
CANSAT21G0369 Cannabis sativa HOM05D006567 ORTHO05D009430 4.8e-13 77.4 54 68.5
CAN.G1178.26 Capsicum annuum HOM05D006567 ORTHO05D009430 4.8e-13 77.4 54 66.7
AUR62007104 Chenopodium quinoa HOM05D006567 ORTHO05D009430 4.8e-13 77.4 54 68.5
AUR62019967 Chenopodium quinoa HOM05D006567 ORTHO05D009430 4.8e-13 77.4 54 68.5
Cpa.g.sc29.179 Carica papaya HOM05D006567 ORTHO05D009430 6.3e-13 77.0 54 70.4
Nitab4.5_0001381g0120 Nicotiana tabacum HOM05D006567 ORTHO05D009430 6.3e-13 77.0 54 64.8
Potri.003G078500 Populus trichocarpa HOM05D006567 ORTHO05D009430 6.3e-13 77.0 54 68.5
RcHm_v2.0_Chr7g0203711 Rosa chinensis HOM05D006567 ORTHO05D009430 6.3e-13 77.0 54 68.5
Sc07g0009260 Simmondsia chinensis HOM05D006567 ORTHO05D009430 6.3e-13 77.0 54 70.4
Sopen08g026950 Solanum pennellii HOM05D006567 ORTHO05D009430 6.3e-13 77.0 54 66.7
Zm00001eb416490 Zea mays HOM05D006567 ORTHO05D009430 6.3e-13 77.0 54 64.8
DCAR_004966 Daucus carota HOM05D006567 ORTHO05D009430 8.2e-13 76.6 54 64.8
QL12p011664 Quercus lobata HOM05D006567 ORTHO05D009430 8.2e-13 76.6 54 68.5
Sed0022818 Sechium edule HOM05D006567 ORTHO05D009430 8.2e-13 76.6 54 66.7
Haze_00669 Corylus avellana HOM05D006567 ORTHO05D009430 1.1e-12 76.3 54 68.5
Dinv39160 Davidia involucrata HOM05D006567 ORTHO05D009430 1.1e-12 76.3 54 64.8
Nitab4.5_0002289g0070 Nicotiana tabacum HOM05D006567 ORTHO05D009430 1.4e-12 75.9 54 64.8
Thecc.03G249000 Theobroma cacao HOM05D006567 ORTHO05D009430 1.4e-12 75.9 54 68.5
CiPaw.11G081200 Carya illinoinensis HOM05D006567 ORTHO05D009430 1.8e-12 75.5 54 68.5
Cc08_g12240 Coffea canephora HOM05D006567 ORTHO05D009430 1.8e-12 75.5 54 66.7
MELO3C005521.2 Cucumis melo HOM05D006567 ORTHO05D009430 1.8e-12 75.5 54 66.7
CsaV3_5G004320 Cucumis sativus L. HOM05D006567 ORTHO05D009430 2.4e-12 75.1 54 66.7
Migut.A01121 Erythranthe guttata HOM05D006567 ORTHO05D009430 2.4e-12 75.1 54 64.8
Peaxi162Scf00209g00122 Petunia axillaris HOM05D006567 ORTHO05D009430 2.4e-12 75.1 54 64.8
HPP92_025881 Vanilla planifolia HOM05D006567 ORTHO05D009430 2.4e-12 75.1 54 66.7
Cfa015824 Carpinus fangiana HOM05D006567 ORTHO05D009430 3.1e-12 74.7 54 66.7
Nn1g00949 Nelumbo nucifera HOM05D006567 ORTHO05D009430 3.1e-12 74.7 54 66.7
Aa31LG1G23140 Aethionema arabicum HOM05D006567 ORTHO05D009430 5.3e-12 73.9 54 64.8
AL7G37340 Arabidopsis lyrata HOM05D006567 ORTHO05D009430 5.3e-12 73.9 54 64.8
AT4G17370 Arabidopsis thaliana HOM05D006567 ORTHO05D009430 5.3e-12 73.9 54 64.8
Thhalv10025513m.g Eutrema salsugineum HOM05D006567 ORTHO05D009430 5.3e-12 73.9 54 64.8
Glyma.17G143100 Glycine max HOM05D006567 ORTHO05D009430 5.3e-12 73.9 54 66.7
Os08g0148267 Oryza sativa ssp. japonica HOM05D006567 ORTHO05D009430 5.3e-12 73.9 54 64.8
SalBow6G6157 Salvia bowleyana HOM05D006567 ORTHO05D009430 5.3e-12 73.9 54 61.1
Sp7g16810 Schrenkiella parvula HOM05D006567 ORTHO05D009430 5.3e-12 73.9 54 64.8
SGA_v2.0_scaffold26G11306 Striga asiatica HOM05D006567 ORTHO05D009430 5.3e-12 73.9 54 63.0
CARHR223980 Cardamine hirsuta HOM05D006567 ORTHO05D009430 7.0e-12 73.6 54 63.0
MBI04_g09522_MAGBIO Magnolia biondii HOM05D006567 ORTHO05D009430 7.0e-12 73.6 51 64.7
THA.LOC104806666 Tarenaya hassleriana HOM05D006567 ORTHO05D009430 7.0e-12 73.6 54 66.7
Carub.0007s2404 Capsella rubella HOM05D006567 ORTHO05D009430 9.1e-12 73.2 54 64.8
Mapoly0040s0044 Marchantia polymorpha HOM05D006567 ORTHO05D009430 9.1e-12 73.2 54 61.1
FvH4_5g19170 Fragaria vesca HOM05D006567 ORTHO05D009430 1.2e-11 72.8 54 61.1
FAN04G2727 Fragaria x ananassa HOM05D006567 ORTHO05D009430 2.0e-11 72.0 54 61.1
FAN08G1209 Fragaria x ananassa HOM05D006567 ORTHO05D009430 2.0e-11 72.0 54 61.1
BcaNung03466 Brassica carinata HOM05D006567 ORTHO05D009430 5.9e-11 70.5 54 63.0
FAN18G0654 Fragaria x ananassa HOM05D006567 ORTHO05D009430 5.9e-11 70.5 54 59.3
SMO228G0171 Selaginella moellendorffii HOM05D006567 ORTHO05D009430 5.9e-11 70.5 54 57.4
A03p50390 Brassica napus HOM05D006567 ORTHO05D009430 7.7e-11 70.1 54 63.0
BolC7t45378H Brassica oleracea HOM05D006567 ORTHO05D009430 7.7e-11 70.1 54 63.0
BraA03t14129Z Brassica rapa HOM05D006567 ORTHO05D009430 7.7e-11 70.1 54 63.0
ClCG01G004160 Citrullus lanatus HOM05D006567 ORTHO05D009430 7.7e-11 70.1 55 61.8
SEGI_34288 Sequoiadendron giganteum HOM05D006567 ORTHO05D009430 7.7e-11 70.1 54 64.8
AagrBONN_evm.TU.Sc2ySwM_228.3639 Anthoceros agrestis HOM05D006567 ORTHO05D009430 1.0e-10 69.7 54 61.1
ATR0057G105 Amborella trichopoda HOM05D006567 ORTHO05D009430 1.3e-10 69.3 54 57.4
Lj2C221T14 Lonicera japonica HOM05D006567 ORTHO05D009430 2.9e-10 68.2 44 72.7
Pp3c4_15440 Physcomitrium patens HOM05D006567 ORTHO05D009430 5.0e-10 67.4 54 55.6


User provided reference genes

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