Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 2.7e-286 988.4 676 100.0
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 4.9e-203 711.8 756 65.6
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 4.9e-195 685.3 756 66.5
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 2.4e-157 560.1 765 55.9
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 4.6e-145 519.2 767 52.0
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 1.3e-142 511.1 788 52.9
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 2.7e-137 493.4 770 56.6
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 1.4e-130 471.1 771 54.3
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 2.0e-116 424.1 772 40.7
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 5.9e-116 422.5 812 44.1
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 5.0e-115 419.5 769 46.8
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 4.2e-114 416.4 808 46.0
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 5.5e-114 416.0 767 45.5
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 3.6e-113 413.3 766 41.8
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.8e-112 411.0 793 40.9
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 7.5e-111 405.6 824 43.3
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 2.8e-110 403.7 720 43.2
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 3.7e-110 403.3 788 44.5
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 3.1e-109 400.2 793 44.6
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 5.9e-108 396.0 771 41.2
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 2.9e-107 393.7 773 41.0
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 1.6e-105 387.9 788 43.4
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 3.0e-104 383.6 797 38.6
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 2.6e-103 380.6 789 41.6
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 4.4e-103 379.8 801 41.3
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.4e-101 374.8 764 38.5
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.9e-99 367.1 777 39.5
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.9e-99 367.1 770 41.4
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 6.6e-99 365.9 793 39.8
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 2.8e-97 360.5 775 39.5
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 2.8e-97 360.5 778 38.3
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 8.0e-97 359.0 786 39.8
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 1.0e-96 358.6 736 39.9
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.0e-96 357.1 792 39.3
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 4.0e-96 356.7 802 39.5
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.0e-96 356.7 794 43.2
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.5e-95 354.8 783 42.7
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 2.0e-95 354.4 768 37.1
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 2.0e-95 354.4 764 44.8
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 3.4e-95 353.6 777 43.8
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.4e-95 353.2 780 42.4
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.7e-94 350.1 758 41.2
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 5.4e-93 346.3 870 40.9
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.2e-92 345.1 792 43.7
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.3e-91 341.7 766 41.1
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 1.2e-89 335.1 756 36.6
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 1.6e-89 334.7 734 38.4
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 3.6e-89 333.6 783 40.6
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.7e-89 333.2 736 42.0
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 4.0e-88 330.1 832 41.8
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 4.0e-88 330.1 832 41.3
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.2e-87 328.6 635 41.7
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 3.4e-87 327.0 775 39.0
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 7.5e-87 325.9 781 41.7
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 1.3e-86 325.1 714 40.2
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 3.2e-85 320.5 737 36.8
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 3.2e-85 320.5 802 33.7
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 4.1e-85 320.1 746 36.7
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 9.2e-85 318.9 764 41.4
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 2.7e-84 317.4 811 37.7
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 3.9e-83 313.5 720 36.1
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.1e-82 312.0 778 38.9
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 3.3e-82 310.5 681 37.6
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 3.3e-82 310.5 780 36.7
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 2.8e-81 307.4 704 37.2
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.8e-80 304.7 767 34.7
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 5.2e-80 303.1 718 36.4
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 3.7e-78 297.0 686 36.6
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 4.9e-78 296.6 766 38.5
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 2.4e-77 294.3 737 39.3
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 1.2e-76 292.0 774 34.5
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 2.1e-76 291.2 626 41.2
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 2.7e-76 290.8 696 40.5
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.3e-75 288.5 736 37.6
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 2.3e-75 287.7 839 42.4
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 2.3e-75 287.7 773 36.0
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 3.0e-75 287.3 793 34.4
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 3.0e-75 287.3 788 35.7
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 3.9e-75 287.0 696 40.2
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 5.1e-75 286.6 775 35.2
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 6.6e-75 286.2 763 43.4
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 1.9e-74 284.6 730 33.4
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 3.3e-74 283.9 649 46.2
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 4.7e-73 280.0 727 34.4
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 6.2e-73 279.6 685 39.3
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 1.4e-72 278.5 748 33.8
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 9.9e-71 272.3 734 35.1
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 1.7e-70 271.6 743 37.3
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 1.4e-69 268.5 750 39.9
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 2.4e-69 267.7 787 41.6
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 2.4e-69 267.7 801 42.6
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 1.2e-68 265.4 798 36.6
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 1.6e-68 265.0 813 34.3
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 1.0e-67 262.3 699 33.6
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 1.7e-67 261.5 754 33.4
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 1.1e-66 258.8 699 40.1
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 9.6e-66 255.8 778 35.9
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.6e-65 255.0 689 35.7
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.1e-64 252.3 727 34.5
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 8.9e-64 249.2 783 38.7
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.0e-63 248.1 778 35.5
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 2.6e-63 247.7 728 33.8
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 3.2e-61 240.7 751 34.0
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 5.4e-61 240.0 749 39.7
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 9.3e-61 239.2 733 33.4
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 1.0e-59 235.7 584 33.6
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 5.1e-59 233.4 722 34.9
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 5.1e-59 233.4 688 36.9
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 7.3e-58 229.6 768 32.4
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 3.6e-57 227.3 656 38.9
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 4.0e-56 223.8 734 34.6
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 4.4e-55 220.3 777 32.9
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 4.4e-55 220.3 777 32.9
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 7.6e-55 219.5 741 37.0
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 1.3e-54 218.8 735 33.9
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 8.4e-54 216.1 781 32.7
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 3.2e-53 214.2 738 34.4
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 3.9e-51 207.2 720 30.1
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 3.3e-50 204.1 781 33.0
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 1.3e-49 202.2 675 30.4
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.8e-49 201.1 718 29.9
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 3.6e-49 200.7 773 34.3
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 3.6e-49 200.7 754 36.3
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 6.2e-49 199.9 850 34.2
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 4.0e-48 197.2 729 33.6
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.4e-45 188.0 719 29.9
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.2e-45 187.6 720 30.7
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 7.1e-45 186.4 632 33.5
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.2e-44 185.7 746 32.8
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 2.1e-44 184.9 750 30.8
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 1.8e-43 181.8 695 34.8
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 8.7e-43 179.5 754 29.3
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 8.1e-41 172.9 596 29.5
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 2.4e-40 171.4 596 29.5
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 6.9e-40 169.9 596 29.2
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.2e-39 169.1 558 33.2
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 4.5e-39 167.2 255 43.5
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 1.0e-38 166.0 368 38.6
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 8.4e-38 162.9 327 38.2
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.2e-36 159.1 735 30.7
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 8.7e-35 152.9 703 29.2
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 3.3e-34 151.0 707 26.7
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 1.1e-32 146.0 877 27.4
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.8e-32 145.2 469 34.8
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 1.8e-32 145.2 223 46.6
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 1.2e-31 142.5 867 27.2
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 2.2e-30 138.3 885 29.7
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.2e-30 138.3 355 37.2
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 3.6e-28 131.0 201 48.3
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 1.3e-27 129.0 453 34.9
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 3.0e-27 127.9 697 28.3
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 5.7e-26 123.6 91 79.1
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 3.7e-25 120.9 149 51.0
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 9.0e-24 116.3 150 48.7
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.7e-22 112.1 213 38.0
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 5.5e-21 107.1 50 98.0
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.2e-20 105.9 105 65.7
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 1.6e-20 105.5 703 28.4
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 4.4e-18 97.4 124 46.0
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.7e-17 95.5 491 32.0
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 2.2e-17 95.1 142 45.1
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.2e-17 95.1 142 39.4
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 2.8e-17 94.7 102 52.9
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 6.3e-17 93.6 173 39.3
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 9.1e-16 89.7 150 38.0
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 3.8e-14 84.3 350 26.9
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 4.7e-12 77.4 74 59.5
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.6e-10 71.6 675 24.3
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.2e-09 68.6 273 25.6
CDE02G0061 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.1e-08 66.2 168 27.4
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 2.4e-08 65.1 329 28.3
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 2.0e-07 62.0 316 25.0
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 7.7e-07 60.1 106 43.4
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 5.0e-06 57.4 326 25.5
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 6.5e-06 57.0 109 33.9


User provided reference genes

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