Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15105 Trifolium pratense HOM05D001613 ORTHO05D001556 2.1e-82 308.9 151 100.0
Ca_15578_v3 Cicer arietinum L. HOM05D001613 ORTHO05D001556 2.2e-47 192.6 114 82.5
Psat5g020320 Pisum sativum HOM05D001613 ORTHO05D001556 1.3e-44 183.3 114 77.2
Medtr3g110260 Medicago truncatula HOM05D001613 ORTHO05D001556 8.7e-44 180.6 115 80.0
Ca_25142_v3 Cicer arietinum L. HOM05D001613 ORTHO05D001556 5.0e-39 164.9 95 82.1
Lj1g0013429 Lotus japonicus HOM05D001613 ORTHO05D001556 9.3e-38 160.6 114 67.5
VMungo1309G2316 Vigna mungo HOM05D008141 ORTHO05D008631 3.7e-34 148.7 114 64.0
arahy.Tifrunner.gnm1.ann1.4S52N9 Arachis hypogaea HOM05D001613 ORTHO05D001556 8.2e-34 147.5 115 61.7
Phvul.009G111400 Phaseolus vulgaris HOM05D001613 ORTHO05D001556 1.1e-33 147.1 114 66.7
Lalb_Chr23g0269691 Lupinus albus HOM05D001613 ORTHO05D001556 9.1e-33 144.1 126 59.5
Glyma.06G087700 Glycine max HOM05D001613 ORTHO05D001556 7.2e-30 134.4 95 70.5
Glyma.04G086200 Glycine max HOM05D001613 ORTHO05D001556 3.9e-28 128.6 92 69.6
Manes.16G074000 Manihot esculenta HOM05D001613 ORTHO05D001556 2.6e-27 125.9 130 53.8
arahy.Tifrunner.gnm1.ann1.Y004SP Arachis hypogaea HOM05D001613 ORTHO05D001556 7.4e-27 124.4 100 58.0
MELO3C003471.2 Cucumis melo HOM05D001613 ORTHO05D001556 1.7e-26 123.2 126 55.6
CsaV3_3G048480 Cucumis sativus L. HOM05D001613 ORTHO05D001556 1.4e-25 120.2 126 54.8
CSS0023026 Camellia sinensis var. sinensis HOM05D001613 ORTHO05D001556 1.8e-25 119.8 130 51.5
TAR626G0213 Trochodendron aralioides HOM05D001613 ORTHO05D001556 3.1e-25 119.0 129 53.5
Ciclev10009238m.g Citrus clementina HOM05D001613 ORTHO05D001556 4.1e-25 118.6 133 50.4
Potri.018G046200 Populus trichocarpa HOM05D001613 ORTHO05D001556 9.1e-25 117.5 130 51.5
Hma1.2p1_0154F.1_g068100 Hydrangea macrophylla HOM05D001613 ORTHO05D001556 1.5e-24 116.7 115 55.7
Atru.chr7.2061 Acer truncatum HOM05D001613 ORTHO05D001556 3.4e-24 115.5 133 49.6
Cfa013383 Carpinus fangiana HOM05D001613 ORTHO05D001556 5.9e-24 114.8 129 48.8
MD15G1091100 Malus domestica HOM05D001613 ORTHO05D001556 1.3e-23 113.6 124 47.6
Hma1.2p1_0049F.1_g028400 Hydrangea macrophylla HOM05D001613 ORTHO05D001556 1.7e-23 113.2 137 48.2
vmacro05265 Vaccinium macrocarpon HOM05D001613 ORTHO05D001556 1.7e-23 113.2 129 48.1
TWI34G0975 Tripterygium wilfordii HOM05D001613 ORTHO05D001556 5.0e-23 111.7 124 51.6
Haze_21907 Corylus avellana HOM05D001613 ORTHO05D001556 1.1e-22 110.5 134 47.8
TAR624G0413 Trochodendron aralioides HOM05D001613 ORTHO05D001556 1.1e-22 110.5 130 49.2
SGA_v2.0_scaffold169G38658 Striga asiatica HOM05D001613 ORTHO05D001556 2.5e-22 109.4 124 47.6
GSVIVG01035290001 Vitis vinifera HOM05D001613 ORTHO05D001556 2.5e-22 109.4 125 49.6
Actinidia15743 Actinidia chinensis HOM05D001613 ORTHO05D001556 4.2e-22 108.6 131 46.6
Sabra18G0045200 Salix brachista HOM05D001613 ORTHO05D001556 4.2e-22 108.6 133 49.6
CiPaw.07G202400 Carya illinoinensis HOM05D001613 ORTHO05D001556 7.2e-22 107.8 127 50.4
TWI63G0587 Tripterygium wilfordii HOM05D001613 ORTHO05D001556 7.2e-22 107.8 122 51.6
QL12p041074 Quercus lobata HOM05D001613 ORTHO05D001556 1.6e-21 106.7 139 44.6
Dinv27919 Davidia involucrata HOM05D001613 ORTHO05D001556 2.1e-21 106.3 135 47.4
Actinidia14684 Actinidia chinensis HOM05D001613 ORTHO05D001556 3.6e-21 105.5 129 46.5
Gohir.A05G045700 Gossypium hirsutum HOM05D001613 ORTHO05D001556 4.7e-21 105.1 134 48.5
Prupe.1G445500 Prunus persica HOM05D001613 ORTHO05D001556 4.7e-21 105.1 123 46.3
Gorai.009G048700 Gossypium raimondii HOM05D001613 ORTHO05D001556 1.0e-20 104.0 134 48.5
Dinv23386 Davidia involucrata HOM05D001613 ORTHO05D001556 1.4e-20 103.6 135 46.7
COL.COLO4_20993 Corchorus olitorius HOM05D001613 ORTHO05D001556 1.8e-20 103.2 137 45.3
Migut.E01534 Erythranthe guttata HOM05D001613 ORTHO05D001556 1.8e-20 103.2 117 51.3
Eucgr.C02981 Eucalyptus grandis HOM05D001613 ORTHO05D001556 1.8e-20 103.2 130 43.1
Gohir.D05G047400 Gossypium hirsutum HOM05D001613 ORTHO05D001556 1.8e-20 103.2 134 47.8
Nn8g39093 Nelumbo nucifera HOM05D001613 ORTHO05D001556 1.8e-20 103.2 131 48.1
Thecc.09G047300 Theobroma cacao HOM05D001613 ORTHO05D001556 1.8e-20 103.2 138 45.7
FAN20G0144 Fragaria x ananassa HOM05D001613 ORTHO05D001556 2.3e-20 102.8 120 45.8
MSTRG.14027 Avicennia marina HOM05D001613 ORTHO05D001556 8.8e-20 100.9 125 48.0
ClCG11G015080 Citrullus lanatus HOM05D001613 ORTHO05D001556 8.8e-20 100.9 166 41.6
Duzib168G1566 Durio zibethinus HOM05D001613 ORTHO05D001556 8.8e-20 100.9 147 46.3
CANSAT25G3521 Cannabis sativa HOM05D001613 ORTHO05D001556 1.1e-19 100.5 120 46.7
Gohir.D13G193600 Gossypium hirsutum HOM05D001613 ORTHO05D001556 2.0e-19 99.8 157 41.4
RcHm_v2.0_Chr6g0306581 Rosa chinensis HOM05D001613 ORTHO05D001556 3.3e-19 99.0 120 44.2
Actinidia30285 Actinidia chinensis HOM05D001613 ORTHO05D001556 5.7e-19 98.2 130 44.6
FAN15G0337 Fragaria x ananassa HOM05D001613 ORTHO05D001556 5.7e-19 98.2 120 44.2
FAN27G0387 Fragaria x ananassa HOM05D001613 ORTHO05D001556 5.7e-19 98.2 120 44.2
Gorai.013G219600 Gossypium raimondii HOM05D001613 ORTHO05D001556 5.7e-19 98.2 151 41.1
Gohir.D07G128500 Gossypium hirsutum HOM05D001613 ORTHO05D001556 7.4e-19 97.8 136 43.4
Gohir.A06G091900 Gossypium hirsutum HOM05D001613 ORTHO05D001556 3.7e-18 95.5 139 43.2
PGR044G2336 Punica granatum HOM05D001613 ORTHO05D001556 3.7e-18 95.5 132 45.5
MSTRG.11691 Avicennia marina HOM05D001613 ORTHO05D001556 8.2e-18 94.4 124 45.2
Migut.A00188 Erythranthe guttata HOM05D001613 ORTHO05D001556 2.4e-17 92.8 127 43.3
Sc06g0000850 Simmondsia chinensis HOM05D001613 ORTHO05D001556 2.4e-17 92.8 147 39.5
SalBow4G3128 Salvia bowleyana HOM05D001613 ORTHO05D001556 3.1e-17 92.4 125 44.0
MBI01_g35401_MAGBIO Magnolia biondii HOM05D001613 ORTHO05D001556 5.3e-17 91.7 130 44.6
Peaxi162Scf00699g00021 Petunia axillaris HOM05D001613 ORTHO05D001556 5.3e-17 91.7 125 41.6
Gohir.D06G091400 Gossypium hirsutum HOM05D001613 ORTHO05D001556 7.0e-17 91.3 139 42.4
Gorai.010G105400 Gossypium raimondii HOM05D001613 ORTHO05D001556 7.0e-17 91.3 139 42.4
Hund03385 Selenicereus undatus HOM05D001613 ORTHO05D001556 7.0e-17 91.3 142 38.7
FvH4_2g35340 Fragaria vesca HOM05D001613 ORTHO05D001556 9.1e-17 90.9 130 40.8
AUR62041965 Chenopodium quinoa HOM05D001613 ORTHO05D001556 1.2e-16 90.5 140 42.1
Sopen08g020210 Solanum pennellii HOM05D001613 ORTHO05D001556 1.2e-16 90.5 125 43.2
unitig_0.g2570 Utricularia gibba HOM05D001613 ORTHO05D001556 1.2e-16 90.5 110 47.3
Nitab4.5_0000239g0070 Nicotiana tabacum HOM05D001613 ORTHO05D001556 1.6e-16 90.1 126 45.2
Sopen11g028830 Solanum pennellii HOM05D001613 ORTHO05D001556 1.6e-16 90.1 126 42.9
Ah.16g105970 Amaranthus hybridus HOM05D001613 ORTHO05D001556 2.6e-16 89.4 140 40.0
CAN.G20.22 Capsicum annuum HOM05D001613 ORTHO05D001556 2.6e-16 89.4 125 43.2
CAN.G309.65 Capsicum annuum HOM05D001613 ORTHO05D001556 2.6e-16 89.4 127 40.9
AUR62009238 Chenopodium quinoa HOM05D001613 ORTHO05D001556 2.6e-16 89.4 140 40.7
Cc08_g09850 Coffea canephora HOM05D001613 ORTHO05D001556 4.5e-16 88.6 125 41.6
Solyc08g066390.3 Solanum lycopersicum HOM05D001613 ORTHO05D001556 4.5e-16 88.6 125 41.6
Solyc11g070160.2 Solanum lycopersicum HOM05D001613 ORTHO05D001556 4.5e-16 88.6 126 42.1
Oeu015264.2 Olea europaea HOM05D001613 ORTHO05D001556 5.9e-16 88.2 70 55.7
Nitab4.5_0006446g0020 Nicotiana tabacum HOM05D001613 ORTHO05D001556 1.0e-15 87.4 125 43.2
Rhsim07G0145900 Rhododendron simsii HOM05D001613 ORTHO05D001556 1.7e-15 86.7 107 46.7
MD09G1204600 Malus domestica HOM05D001613 ORTHO05D001556 3.8e-15 85.5 133 41.4
EL10Ac2g03988 Beta vulgaris HOM05D001613 ORTHO05D001556 5.0e-15 85.1 139 39.6
Dinv30443 Davidia involucrata HOM05D001613 ORTHO05D001556 6.5e-15 84.7 108 46.3
PGSC0003DMG400030116 Solanum tuberosum HOM05D001613 ORTHO05D001556 1.1e-14 84.0 125 41.6
Oeu011282.1 Olea europaea HOM05D001613 ORTHO05D001556 1.5e-14 83.6 92 51.1
Sed0017488 Sechium edule HOM05D001613 ORTHO05D001556 1.5e-14 83.6 67 58.2
Hma1.2p1_1056F.1_g252630 Hydrangea macrophylla HOM05D001613 ORTHO05D001556 5.5e-14 81.6 107 44.9
HanXRQChr13g0402181 Helianthus annuus HOM05D001613 ORTHO05D001556 2.7e-13 79.3 121 41.3
ECA233G4162 Erigeron canadensis HOM05D001613 ORTHO05D001556 6.1e-13 78.2 109 41.3
Prupe.3G060300 Prunus persica HOM05D001613 ORTHO05D001556 6.1e-13 78.2 137 38.7
PSO210G0763 Papaver somniferum HOM05D001613 ORTHO05D001556 1.8e-12 76.6 132 35.6
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 2.3e-12 76.3 106 41.5
Nitab4.5_0000664g0140 Nicotiana tabacum HOM05D001613 ORTHO05D001556 2.3e-12 76.3 110 40.9
Hund06660 Selenicereus undatus HOM05D001613 ORTHO05D001556 2.3e-12 76.3 100 40.0
PSO210G3138 Papaver somniferum HOM05D001613 ORTHO05D001556 5.2e-12 75.1 132 36.4
Nitab4.5_0001567g0210 Nicotiana tabacum HOM05D001613 ORTHO05D001556 6.7e-12 74.7 137 34.3
HanXRQChr02g0050621 Helianthus annuus HOM05D001613 ORTHO05D001556 1.2e-11 73.9 128 39.8
Peaxi162Scf00247g00317 Petunia axillaris HOM05D001613 ORTHO05D001556 2.6e-11 72.8 140 32.9
TWI18G1193 Tripterygium wilfordii HOM05D001613 ORTHO05D001556 4.4e-11 72.0 118 36.4
CiPaw.01G232100 Carya illinoinensis HOM05D001613 ORTHO05D001556 5.7e-11 71.6 118 37.3
SGA_v2.0_scaffold88G27191 Striga asiatica HOM05D001613 ORTHO05D001556 5.7e-11 71.6 65 50.8
Lsat_1_v5_gn_6_22781 Lactuca sativa HOM05D001613 ORTHO05D001556 9.7e-11 70.9 91 42.9
Actinidia32698 Actinidia chinensis HOM05D001613 ORTHO05D001556 1.3e-10 70.5 109 41.3
QL02p071875 Quercus lobata HOM05D001613 ORTHO05D001556 1.7e-10 70.1 131 35.9
Haze_15839 Corylus avellana HOM05D001613 ORTHO05D001556 2.2e-10 69.7 138 34.1
RcHm_v2.0_Chr2g0140241 Rosa chinensis HOM05D001613 ORTHO05D001556 2.8e-10 69.3 122 36.1
SGA_v2.0_scaffold66G22536 Striga asiatica HOM05D001613 ORTHO05D008256 8.2e-10 67.8 114 33.3
Sc12g0009740 Simmondsia chinensis HOM05D001613 ORTHO05D001556 1.1e-09 67.4 123 35.8
AL1G27300 Arabidopsis lyrata HOM05D001613 ORTHO05D001556 1.4e-09 67.0 119 36.1
PGR102G0547 Punica granatum HOM05D001613 ORTHO05D001556 1.4e-09 67.0 116 35.3
GSVIVG01017001001 Vitis vinifera HOM05D001613 ORTHO05D001556 1.8e-09 66.6 117 35.9
Atru.chr1.3516 Acer truncatum HOM05D001613 ORTHO05D001556 2.4e-09 66.2 122 32.8
Aqoxy7G03880 Aquilegia oxysepala HOM05D001613 ORTHO05D001556 2.4e-09 66.2 110 35.5
Actinidia21707 Actinidia chinensis HOM05D001613 ORTHO05D001556 4.1e-09 65.5 99 39.4
C05p13340 Brassica napus HOM05D001613 ORTHO05D001556 4.1e-09 65.5 119 37.0
BolC5t30071H Brassica oleracea HOM05D001613 ORTHO05D001556 4.1e-09 65.5 119 37.0
DCAR_000760 Daucus carota HOM05D001613 ORTHO05D001556 4.1e-09 65.5 133 36.1
arahy.Tifrunner.gnm1.ann1.11RP3X Arachis hypogaea HOM05D002013 ORTHO05D001556 5.3e-09 65.1 53 49.1
Ciclev10026320m.g Citrus clementina HOM05D001613 ORTHO05D001556 5.3e-09 65.1 116 34.5
Dinv37983 Davidia involucrata HOM05D001613 ORTHO05D001556 7.0e-09 64.7 71 42.3
FvH4_6g32283 Fragaria vesca HOM05D001613 ORTHO05D001556 7.0e-09 64.7 122 34.4
Duzib192G0362 Durio zibethinus HOM05D001613 ORTHO05D001556 9.1e-09 64.3 115 37.4
FAN19G1996 Fragaria x ananassa HOM05D001613 ORTHO05D001556 9.1e-09 64.3 120 35.8
Gohir.D06G074200 Gossypium hirsutum HOM05D001613 ORTHO05D001556 9.1e-09 64.3 53 50.9
FAN02G0574 Fragaria x ananassa HOM05D001613 ORTHO05D001556 1.2e-08 63.9 122 34.4
Sp1g13530 Schrenkiella parvula HOM05D001613 ORTHO05D001556 1.2e-08 63.9 122 35.2
FAN05G5700 Fragaria x ananassa HOM05D001613 ORTHO05D001556 1.6e-08 63.5 122 34.4
Carub.0001s1497 Capsella rubella HOM05D001613 ORTHO05D001556 2.0e-08 63.2 127 35.4
Gohir.A13G186800 Gossypium hirsutum HOM05D001613 ORTHO05D001556 2.0e-08 63.2 129 34.1
arahy.Tifrunner.gnm1.ann1.DGF9N8 Arachis hypogaea HOM05D002013 ORTHO05D082305 2.7e-08 62.8 77 42.9
Eucgr.F03070 Eucalyptus grandis HOM05D001613 ORTHO05D001556 3.5e-08 62.4 126 34.9
arahy.Tifrunner.gnm1.ann1.L7W9LN Arachis hypogaea HOM05D002013 ORTHO05D083097 4.5e-08 62.0 44 54.5
AT1G15215 Arabidopsis thaliana HOM05D001613 ORTHO05D001556 5.9e-08 61.6 75 44.0
Potri.001G189200 Populus trichocarpa HOM05D001613 ORTHO05D001556 7.7e-08 61.2 116 34.5
Actinidia39137 Actinidia chinensis HOM05D001613 ORTHO05D001556 1.0e-07 60.8 131 30.5
vmacro17016 Vaccinium macrocarpon HOM05D001613 ORTHO05D001556 1.0e-07 60.8 112 34.8
vmacro17020 Vaccinium macrocarpon HOM05D001613 ORTHO05D001556 1.0e-07 60.8 112 34.8
Rhsim12G0202800 Rhododendron simsii HOM05D001613 ORTHO05D001556 1.3e-07 60.5 116 33.6
arahy.Tifrunner.gnm1.ann1.M7K8XF Arachis hypogaea HOM05D002013 ORTHO05D087475 1.7e-07 60.1 46 52.2
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 1.7e-07 60.1 55 50.9
BcaC05g25450 Brassica carinata HOM05D001613 ORTHO05D001556 1.7e-07 60.1 66 45.5
TWI75G1867 Tripterygium wilfordii HOM05D001613 ORTHO05D001556 2.2e-07 59.7 118 30.5
Migut.I00902 Erythranthe guttata HOM05D001613 ORTHO05D001556 2.9e-07 59.3 113 31.9
Rhsim02G0175800 Rhododendron simsii HOM05D001613 ORTHO05D001556 2.9e-07 59.3 59 47.5
SalBow2G1143 Salvia bowleyana HOM05D001613 ORTHO05D001556 2.9e-07 59.3 114 33.3
PGSC0003DMG401018559 Solanum tuberosum HOM05D001613 ORTHO05D001556 2.9e-07 59.3 74 41.9
SalBow1G1479 Salvia bowleyana HOM05D001613 ORTHO05D001556 3.8e-07 58.9 93 40.9
FAN14G5448 Fragaria x ananassa HOM05D001613 ORTHO05D001556 5.0e-07 58.5 122 33.6
arahy.Tifrunner.gnm1.ann1.440ZV2 Arachis hypogaea HOM05D001613 ORTHO05D001556 6.5e-07 58.2 116 33.6
arahy.Tifrunner.gnm1.ann1.ARI2AB Arachis hypogaea HOM05D001613 ORTHO05D001556 6.5e-07 58.2 116 33.6
MSTRG.22643 Avicennia marina HOM05D001613 ORTHO05D001556 6.5e-07 58.2 117 32.5
Cfa003655 Carpinus fangiana HOM05D006831 ORTHO05D008256 6.5e-07 58.2 151 30.5
Aa31LG7G20 Aethionema arabicum HOM05D001613 ORTHO05D001556 8.5e-07 57.8 121 33.9
Lj5A54T62 Lonicera japonica HOM05D001613 ORTHO05D001556 1.1e-06 57.4 137 35.0
Nitab4.5_0001755g0130 Nicotiana tabacum HOM05D001613 ORTHO05D001556 1.1e-06 57.4 105 34.3
Sabra01G0151900 Salix brachista HOM05D001613 ORTHO05D001556 1.1e-06 57.4 70 41.4
RhsimUnG0235600 Rhododendron simsii HOM05D001613 ORTHO05D001556 1.5e-06 57.0 55 49.1
Oeu026793.1 Olea europaea HOM05D001613 ORTHO05D001556 1.9e-06 56.6 120 32.5
Nitab4.5_0009505g0010 Nicotiana tabacum HOM05D001613 ORTHO05D001556 2.5e-06 56.2 104 33.7
RcHm_v2.0_Chr4g0409031 Rosa chinensis HOM05D001613 ORTHO05D001556 2.5e-06 56.2 46 52.2
FvH4_1g07250 Fragaria vesca HOM05D001613 ORTHO05D001556 3.2e-06 55.8 130 32.3
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 4.2e-06 55.5 51 47.1
MD08G1111600 Malus domestica HOM05D001613 ORTHO05D001556 4.2e-06 55.5 88 40.9
Rhsim04G0023300 Rhododendron simsii HOM05D001613 ORTHO05D001556 5.5e-06 55.1 133 29.3
Haze_06254 Corylus avellana HOM05D006831 ORTHO05D008256 9.4e-06 54.3 75 36.0


User provided reference genes

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