Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104824923 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 9.7e-40 166.4 86 100.0
THA.LOC104807661 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 2.4e-38 161.8 84 97.6
AL4G12190 Arabidopsis lyrata HOM05D007087 ORTHO05D008968 7.7e-37 156.8 86 93.0
AT2G22640 Arabidopsis thaliana HOM05D007087 ORTHO05D008968 7.7e-37 156.8 86 93.0
BcaB06g27810 Brassica carinata HOM05D007087 ORTHO05D008968 7.7e-37 156.8 86 93.0
Carub.0004s0180 Capsella rubella HOM05D007087 ORTHO05D008968 7.7e-37 156.8 86 93.0
Thhalv10000402m.g Eutrema salsugineum HOM05D007087 ORTHO05D008968 7.7e-37 156.8 86 93.0
COL.COLO4_11683 Corchorus olitorius HOM05D007087 ORTHO05D008968 1.7e-36 155.6 86 91.9
Cfa006833 Carpinus fangiana HOM05D007087 ORTHO05D008968 2.9e-36 154.8 86 90.7
Hma1.2p1_0080F.1_g042080 Hydrangea macrophylla HOM05D007087 ORTHO05D008968 2.9e-36 154.8 86 90.7
Gohir.A11G208700 Gossypium hirsutum HOM05D007087 ORTHO05D008968 3.8e-36 154.5 86 90.7
Gohir.D11G214800 Gossypium hirsutum HOM05D007087 ORTHO05D008968 3.8e-36 154.5 86 90.7
Actinidia16395 Actinidia chinensis HOM05D007087 ORTHO05D008968 8.5e-36 153.3 86 88.4
Manes.12G121500 Manihot esculenta HOM05D007087 ORTHO05D008968 8.5e-36 153.3 86 90.7
Lsat_1_v5_gn_4_156341 Lactuca sativa HOM05D007087 ORTHO05D008968 1.1e-35 152.9 86 89.5
PGR102G1803 Punica granatum HOM05D007087 ORTHO05D008968 1.1e-35 152.9 86 89.5
QL06p037367 Quercus lobata HOM05D007087 ORTHO05D008968 1.1e-35 152.9 85 89.4
Actinidia22784 Actinidia chinensis HOM05D007087 ORTHO05D008968 1.4e-35 152.5 86 88.4
MBI16_g36494_MAGBIO Magnolia biondii HOM05D007087 ORTHO05D008968 1.4e-35 152.5 84 89.3
BcaC02g08628 Brassica carinata HOM05D007087 ORTHO05D008968 1.9e-35 152.1 87 92.0
A04p17120 Brassica napus HOM05D007087 ORTHO05D008968 1.9e-35 152.1 87 92.0
C04p51930 Brassica napus HOM05D007087 ORTHO05D008968 1.9e-35 152.1 87 92.0
BolC4t26765H Brassica oleracea HOM05D007087 ORTHO05D008968 1.9e-35 152.1 87 92.0
BraA04t17341Z Brassica rapa HOM05D007087 ORTHO05D008968 1.9e-35 152.1 87 92.0
Ca_13466_v3 Cicer arietinum L. HOM05D007087 ORTHO05D008968 1.9e-35 152.1 86 88.4
Dinv27003 Davidia involucrata HOM05D007087 ORTHO05D008968 1.9e-35 152.1 86 88.4
Eucgr.I00598 Eucalyptus grandis HOM05D007087 ORTHO05D008968 1.9e-35 152.1 86 88.4
Eucgr.I00599 Eucalyptus grandis HOM05D007087 ORTHO05D008968 1.9e-35 152.1 86 88.4
Glyma.01G020200 Glycine max HOM05D007087 ORTHO05D008968 1.9e-35 152.1 86 88.4
Gorai.007G230500 Gossypium raimondii HOM05D007087 ORTHO05D008968 1.9e-35 152.1 84 90.5
Lj2g0010143 Lotus japonicus HOM05D007087 ORTHO05D008968 1.9e-35 152.1 86 88.4
Medtr5g030935 Medicago truncatula HOM05D007087 ORTHO05D008968 1.9e-35 152.1 86 88.4
Phvul.002G143500 Phaseolus vulgaris HOM05D007087 ORTHO05D008968 1.9e-35 152.1 86 88.4
Psat2g134040 Pisum sativum HOM05D007087 ORTHO05D008968 1.9e-35 152.1 86 88.4
Cpa.g.sc129.16 Carica papaya HOM05D007087 ORTHO05D008968 2.5e-35 151.8 86 89.5
Ciclev10027006m.g Citrus clementina HOM05D007087 ORTHO05D008968 2.5e-35 151.8 86 89.5
Thecc.01G084300 Theobroma cacao HOM05D007087 ORTHO05D008968 2.5e-35 151.8 86 89.5
TAR376G1208 Trochodendron aralioides HOM05D007087 ORTHO05D008968 2.5e-35 151.8 84 89.3
CSS0037594 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 3.2e-35 151.4 86 88.4
CSS0044951 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 3.2e-35 151.4 86 88.4
TWI53G1267 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 3.2e-35 151.4 86 89.5
TWI77G0839 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 3.2e-35 151.4 86 88.4
Oeu024989.2 Olea europaea HOM05D007087 ORTHO05D008968 4.2e-35 151.0 86 87.2
TPR.G37071 Trifolium pratense HOM05D007087 ORTHO05D008968 4.2e-35 151.0 86 87.2
Duzib264G0202 Durio zibethinus HOM05D007087 ORTHO05D008968 5.5e-35 150.6 83 90.4
MD01G1044400 Malus domestica HOM05D007087 ORTHO05D008968 5.5e-35 150.6 84 88.1
Prupe.6G209300 Prunus persica HOM05D007087 ORTHO05D008968 5.5e-35 150.6 84 88.1
vmacro18037 Vaccinium macrocarpon HOM05D007087 ORTHO05D008968 5.5e-35 150.6 86 88.4
Glyma.09G202200 Glycine max HOM05D007087 ORTHO05D008968 7.2e-35 150.2 86 87.2
arahy.Tifrunner.gnm1.ann1.6G1T2R Arachis hypogaea HOM05D007087 ORTHO05D008968 9.4e-35 149.8 86 87.2
arahy.Tifrunner.gnm1.ann1.NU08EI Arachis hypogaea HOM05D007087 ORTHO05D008968 9.4e-35 149.8 86 87.2
FvH4_1g19040 Fragaria vesca HOM05D007087 ORTHO05D008968 9.4e-35 149.8 84 88.1
FAN23G1122 Fragaria x ananassa HOM05D007087 ORTHO05D008968 9.4e-35 149.8 84 88.1
FAN26G0060 Fragaria x ananassa HOM05D007087 ORTHO05D008968 9.4e-35 149.8 84 88.1
FAN28G2302 Fragaria x ananassa HOM05D007087 ORTHO05D008968 9.4e-35 149.8 84 88.1
RcHm_v2.0_Chr2g0110041 Rosa chinensis HOM05D007087 ORTHO05D008968 9.4e-35 149.8 84 88.1
ECA232G4432 Erigeron canadensis HOM05D007087 ORTHO05D008968 1.2e-34 149.4 86 87.2
HanXRQChr09g0262861 Helianthus annuus HOM05D007087 ORTHO05D008968 1.2e-34 149.4 86 87.2
HanXRQChr11g0324431 Helianthus annuus HOM05D007087 ORTHO05D008968 1.6e-34 149.1 86 87.2
Sc16g0000740 Simmondsia chinensis HOM05D007087 ORTHO05D008968 1.6e-34 149.1 83 89.2
CiPaw.07G042900 Carya illinoinensis HOM05D007087 ORTHO05D008968 2.1e-34 148.7 86 87.2
Duzib147G0219 Durio zibethinus HOM05D007087 ORTHO05D008968 2.1e-34 148.7 83 89.2
Atru.chr3.1157 Acer truncatum HOM05D007087 ORTHO05D008968 2.7e-34 148.3 84 88.1
Atru.chr3.1173 Acer truncatum HOM05D007087 ORTHO05D008968 2.7e-34 148.3 84 88.1
CiPaw.08G145100 Carya illinoinensis HOM05D007087 ORTHO05D008968 8.0e-34 146.7 86 84.9
Lalb_Chr05g0216201 Lupinus albus HOM05D007087 ORTHO05D008968 8.0e-34 146.7 86 84.9
TAR625G1164 Trochodendron aralioides HOM05D007087 ORTHO05D008968 8.0e-34 146.7 84 85.7
EL10Ac6g13306 Beta vulgaris HOM05D007087 ORTHO05D008968 1.0e-33 146.4 83 86.7
MELO3C007697.2 Cucumis melo HOM05D007087 ORTHO05D008968 1.0e-33 146.4 86 86.0
AUR62005889 Chenopodium quinoa HOM05D007087 ORTHO05D008968 1.4e-33 146.0 83 86.7
Lalb_Chr09g0325791 Lupinus albus HOM05D007087 ORTHO05D008968 1.4e-33 146.0 86 86.0
Aqoxy5G01405 Aquilegia oxysepala HOM05D007087 ORTHO05D008968 5.2e-33 144.1 88 84.1
Hund16615 Selenicereus undatus HOM05D007087 ORTHO05D008968 3.3e-32 141.4 84 85.7
Migut.L00449 Erythranthe guttata HOM05D007087 ORTHO05D008968 7.4e-32 140.2 84 81.0
CDE01G0651 Ceratophyllum demersum HOM05D007087 ORTHO05D008968 1.3e-31 139.4 86 80.2
PSO017G4672 Papaver somniferum HOM05D007087 ORTHO05D008968 4.8e-31 137.5 86 80.2
PSO478G0358 Papaver somniferum HOM05D007087 ORTHO05D008968 4.8e-31 137.5 86 80.2
CAN.G11.24 Capsicum annuum HOM05D007087 ORTHO05D008968 4.1e-30 134.4 86 77.9
Sp4g01675 Schrenkiella parvula HOM05D007087 ORTHO05D008968 4.1e-30 134.4 72 94.4
Zm00001eb259430 Zea mays HOM05D007087 ORTHO05D008968 7.0e-30 133.7 84 76.2
Potri.014G010000 Populus trichocarpa HOM05D007087 ORTHO05D008968 1.6e-29 132.5 92 72.8
A09p57350 Brassica napus HOM05D007087 ORTHO05D008968 4.5e-29 131.0 88 81.8
BraA09t41128Z Brassica rapa HOM05D007087 ORTHO05D008968 4.5e-29 131.0 88 81.8
CsaV3_6G044750 Cucumis sativus L. HOM05D007087 ORTHO05D008968 2.2e-28 128.6 72 88.9
BcaB08g35111 Brassica carinata HOM05D007087 ORTHO05D008968 2.9e-28 128.3 93 76.3
Cc07_g07910 Coffea canephora HOM05D007087 ORTHO05D008968 1.5e-27 125.9 84 76.2
ATR0800G005 Amborella trichopoda HOM05D007087 ORTHO05D008968 1.9e-27 125.6 78 79.5
Dinv36975 Davidia involucrata HOM05D007087 ORTHO05D008968 4.2e-27 124.4 73 84.9
Solyc03g043720.4 Solanum lycopersicum HOM05D007087 ORTHO05D008968 4.2e-27 124.4 86 74.4
Sopen03g007570 Solanum pennellii HOM05D007087 ORTHO05D008968 4.2e-27 124.4 86 74.4
PGSC0003DMG400016688 Solanum tuberosum HOM05D007087 ORTHO05D008968 4.2e-27 124.4 86 74.4
Peaxi162Scf00118g00061 Petunia axillaris HOM05D007087 ORTHO05D008968 9.4e-27 123.2 84 75.0
Nitab4.5_0000465g0110 Nicotiana tabacum HOM05D007087 ORTHO05D008968 3.6e-26 121.3 86 73.3
ClCG01G018190 Citrullus lanatus HOM05D007087 ORTHO05D008968 4.7e-26 120.9 73 84.9
Sabra14G0004400 Salix brachista HOM05D007087 ORTHO05D008968 4.7e-26 120.9 73 78.1
COL.COLO4_02760 Corchorus olitorius HOM05D007087 ORTHO05D008968 6.1e-26 120.6 83 77.1
Sabra14G0001400 Salix brachista HOM05D007087 ORTHO05D008968 1.8e-25 119.0 75 76.0
Os02g0829900 Oryza sativa ssp. japonica HOM05D007087 ORTHO05D008968 8.8e-25 116.7 86 69.8
Sed0015245 Sechium edule HOM05D007087 ORTHO05D008968 1.2e-24 116.3 86 68.6
Pp3c8_2740 Physcomitrium patens HOM05D007087 ORTHO05D008968 5.9e-21 104.0 76 71.1
AagrBONN_evm.TU.Sc2ySwM_344.2813 Anthoceros agrestis HOM05D007087 ORTHO05D008968 3.8e-20 101.3 76 63.2
Mapoly0132s0041 Marchantia polymorpha HOM05D007087 ORTHO05D008968 1.9e-19 99.0 72 66.7
Nitab4.5_0008656g0010 Nicotiana tabacum HOM05D007087 ORTHO05D008968 2.7e-18 95.1 86 62.8
Nn5g29785 Nelumbo nucifera HOM05D007087 ORTHO05D008968 8.0e-18 93.6 64 76.6
SMO144G0170 Selaginella moellendorffii HOM05D007087 ORTHO05D008968 2.0e-16 89.0 69 59.4
Aa31LG7G14170 Aethionema arabicum HOM05D007087 ORTHO05D008968 3.4e-16 88.2 44 97.7
FAN19G2569 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.1e-14 83.2 49 81.6
unitig_32.g10648 Utricularia gibba HOM05D007087 ORTHO05D008968 1.0e-12 76.6 46 76.1
Actinidia36375 Actinidia chinensis HOM05D007087 ORTHO05D008968 1.3e-12 76.3 70 60.0
SEGI_40703 Sequoiadendron giganteum HOM05D007087 ORTHO05D008968 5.2e-09 64.3 64 43.8
Nitab4.5_0000465g0080 Nicotiana tabacum HOM05D007087 ORTHO05D008968 1.4e-06 56.2 33 78.8


User provided reference genes

Program Settings