Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 4.9e-172 607.8 337 100.0
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.1e-158 563.5 337 92.3
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 1.1e-158 563.5 337 92.3
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 2.4e-158 562.4 338 92.6
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.5e-157 559.7 337 91.7
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 3.4e-157 558.5 337 92.0
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.3e-156 556.6 337 90.2
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 1.3e-156 556.6 337 90.8
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 2.2e-156 555.8 338 89.6
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 2.9e-156 555.4 337 91.7
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 3.8e-156 555.1 338 89.1
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 3.8e-156 555.1 337 91.4
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 1.4e-155 553.1 337 91.1
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 1.4e-155 553.1 337 90.2
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 2.5e-155 552.4 337 90.2
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 4.2e-155 551.6 337 90.5
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 4.2e-155 551.6 338 91.1
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 7.2e-155 550.8 338 90.2
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 9.4e-155 550.4 337 89.6
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 9.4e-155 550.4 337 89.6
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 2.1e-154 549.3 337 90.2
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 2.7e-154 548.9 337 85.8
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 6.1e-154 547.7 338 89.3
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 7.9e-154 547.4 338 88.2
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 7.9e-154 547.4 337 90.5
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 1.0e-153 547.0 337 90.5
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 1.8e-153 546.2 337 89.0
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 3.0e-153 545.4 337 88.4
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 3.9e-153 545.0 349 88.5
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 2.0e-152 542.7 337 88.7
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 2.0e-152 542.7 337 88.4
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 2.5e-152 542.3 337 88.7
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 2.5e-152 542.3 337 89.0
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 4.3e-152 541.6 339 90.0
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 2.8e-151 538.9 338 88.5
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.7e-151 538.5 338 87.6
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 3.7e-151 538.5 337 89.0
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 8.2e-151 537.3 337 88.4
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 8.2e-151 537.3 336 87.8
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 8.2e-151 537.3 336 87.8
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.1e-150 537.0 337 88.1
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 1.4e-150 536.6 353 86.4
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 2.4e-150 535.8 337 87.8
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 5.3e-150 534.6 337 87.8
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 1.5e-149 533.1 341 87.4
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 7.7e-149 530.8 337 87.5
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 7.7e-149 530.8 337 89.0
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 1.3e-148 530.0 330 90.9
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.3e-148 530.0 337 87.5
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.7e-148 529.6 340 87.9
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 3.8e-148 528.5 337 86.1
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 3.8e-148 528.5 340 86.5
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 1.4e-147 526.6 337 88.7
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 1.9e-147 526.2 346 87.0
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 1.9e-147 526.2 338 87.3
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 4.2e-147 525.0 338 87.0
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 4.2e-147 525.0 338 87.0
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 5.5e-147 524.6 337 81.0
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 5.5e-147 524.6 340 87.6
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 9.4e-147 523.9 337 86.4
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.6e-146 523.1 339 87.0
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 2.1e-146 522.7 337 86.4
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 2.7e-146 522.3 347 85.3
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 2.7e-146 522.3 337 85.2
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 6.1e-146 521.2 355 82.5
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 6.1e-146 521.2 355 82.5
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 6.1e-146 521.2 372 80.6
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 1.0e-145 520.4 347 85.0
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 1.0e-145 520.4 339 86.1
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 1.0e-145 520.4 337 86.6
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 1.0e-145 520.4 337 86.6
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 1.4e-145 520.0 337 87.2
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 1.8e-145 519.6 337 86.6
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 2.3e-145 519.2 337 86.4
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 2.3e-145 519.2 337 86.4
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 3.3e-144 515.4 331 87.6
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 1.3e-143 513.5 321 88.2
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 2.8e-143 512.3 359 82.2
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 1.1e-142 510.4 367 79.8
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 1.8e-142 509.6 330 88.2
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 2.4e-142 509.2 337 83.7
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 9.1e-142 507.3 352 82.1
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 1.2e-141 506.9 337 84.3
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 1.2e-141 506.9 339 84.4
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 2.0e-141 506.1 321 88.5
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 3.5e-141 505.4 337 85.5
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 7.7e-141 504.2 337 85.5
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 7.7e-141 504.2 338 84.6
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 1.3e-140 503.4 368 80.4
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 1.3e-140 503.4 339 84.1
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 5.0e-140 501.5 321 87.5
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 9.4e-139 497.3 337 78.6
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.2e-138 496.9 337 82.8
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 1.6e-138 496.5 377 76.4
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 2.3e-137 492.7 340 79.4
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 1.5e-136 490.0 349 81.1
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 2.6e-136 489.2 337 81.6
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 3.3e-136 488.8 337 81.6
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.2e-135 486.1 337 83.1
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 4.8e-135 485.0 325 84.6
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 4.8e-135 485.0 325 84.6
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 1.7e-132 476.5 337 74.2
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.2e-132 476.1 366 77.0
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.2e-132 476.1 366 77.0
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 2.1e-130 469.5 338 81.4
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 2.3e-129 466.1 305 87.2
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 3.4e-128 462.2 337 78.9
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 5.0e-124 448.4 352 75.3
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 8.0e-122 441.0 516 57.0
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 2.6e-120 436.0 284 86.3
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 2.8e-119 432.6 334 78.4
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 1.3e-116 423.7 274 89.4
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 2.9e-116 422.5 223 91.9
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 1.7e-108 396.7 321 75.7
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.9e-108 396.0 339 73.2
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 2.6e-104 382.9 255 89.8
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 1.3e-103 380.6 320 74.4
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.3e-97 359.8 337 67.1
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.4e-94 350.5 277 74.0
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 1.1e-91 340.9 337 64.1
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 4.9e-87 325.5 381 48.6
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 6.2e-82 308.5 330 53.9
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 1.4e-81 307.4 147 97.3
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 2.5e-67 260.0 181 72.4
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 2.4e-65 253.4 211 78.2
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 2.2e-63 246.9 326 47.5
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 5.5e-54 215.7 116 87.9
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 6.3e-50 202.2 165 73.3
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.3e-43 179.9 82 98.8
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.4e-40 169.9 91 92.3
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 3.0e-36 156.8 90 91.1
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 6.7e-36 155.6 90 90.0
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 4.2e-22 109.8 55 92.7
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.4e-20 104.8 64 85.9
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 7.5e-19 99.0 203 30.0
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.1e-17 95.1 240 29.2
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.1e-14 85.1 64 65.6
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 6.1e-13 79.3 39 89.7
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.3e-12 77.4 85 77.6
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.8e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.8e-12 75.5 41 90.2
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 3.7e-10 70.1 45 73.3
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.7e-10 70.1 30 96.7


User provided reference genes

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