Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3610 Trochodendron aralioides HOM05D004768 ORTHO05D005812 6.3e-60 233.8 109 100.0
TAR633G0463 Trochodendron aralioides HOM05D004768 ORTHO05D005812 8.2e-52 206.8 107 88.8
PSO339G5247 Papaver somniferum HOM05D004768 ORTHO05D005812 6.7e-46 187.2 107 82.2
Dinv21211 Davidia involucrata HOM05D004768 ORTHO05D005812 1.1e-45 186.4 108 80.6
Hma1.2p1_0084F.1_g043770 Hydrangea macrophylla HOM05D004768 ORTHO05D005812 1.1e-45 186.4 108 79.6
PSO384G2514 Papaver somniferum HOM05D004768 ORTHO05D005812 1.1e-45 186.4 107 82.2
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 2.6e-45 185.3 107 80.4
Aqoxy2G01203 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 7.4e-45 183.7 108 80.6
CsaV3_3G037260 Cucumis sativus L. HOM05D004768 ORTHO05D005812 1.3e-44 183.0 107 80.4
Rhsim03G0075500 Rhododendron simsii HOM05D004768 ORTHO05D005812 1.3e-44 183.0 108 76.9
ClCG10G018990 Citrullus lanatus HOM05D004768 ORTHO05D005812 1.7e-44 182.6 107 79.4
Dinv31684 Davidia involucrata HOM05D004768 ORTHO05D005812 2.2e-44 182.2 108 79.6
CSS0047457 Camellia sinensis var. sinensis HOM05D004768 ORTHO05D005812 4.8e-44 181.0 107 78.5
MELO3C009471.2 Cucumis melo HOM05D004768 ORTHO05D005812 4.8e-44 181.0 107 78.5
TWI74G0982 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 8.2e-44 180.3 107 78.5
TWI77G0792 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 1.1e-43 179.9 107 78.5
TWI53G2067 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 2.4e-43 178.7 107 77.6
ATR0776G063 Amborella trichopoda HOM05D004768 ORTHO05D005812 3.1e-43 178.3 102 79.4
Thecc.05G088700 Theobroma cacao HOM05D004768 ORTHO05D005812 3.1e-43 178.3 107 76.6
MSTRG.26639 Avicennia marina HOM05D004768 ORTHO05D005812 5.3e-43 177.6 107 76.6
Cpa.g.sc5.22 Carica papaya HOM05D004768 ORTHO05D005812 5.3e-43 177.6 107 77.6
Manes.08G025000 Manihot esculenta HOM05D004768 ORTHO05D005812 1.6e-42 176.0 107 74.8
Cc06_g05720 Coffea canephora HOM05D004768 ORTHO05D005812 2.0e-42 175.6 108 74.1
Eucgr.K02044 Eucalyptus grandis HOM05D004768 ORTHO05D005812 2.0e-42 175.6 107 74.8
Sed0006419 Sechium edule HOM05D004768 ORTHO05D005812 2.0e-42 175.6 107 76.6
PSO229G0127 Papaver somniferum HOM05D004768 ORTHO05D005812 3.5e-42 174.9 107 76.6
Manes.09G055600 Manihot esculenta HOM05D004768 ORTHO05D005812 4.5e-42 174.5 107 75.7
Nitab4.5_0003550g0050 Nicotiana tabacum HOM05D004768 ORTHO05D005812 4.5e-42 174.5 107 74.8
Migut.L01777 Erythranthe guttata HOM05D004768 ORTHO05D005812 7.7e-42 173.7 107 75.7
Gohir.A01G206500 Gossypium hirsutum HOM05D004768 ORTHO05D005812 7.7e-42 173.7 107 73.8
Gorai.002G240100 Gossypium raimondii HOM05D004768 ORTHO05D005812 7.7e-42 173.7 107 73.8
COL.COLO4_29739 Corchorus olitorius HOM05D004768 ORTHO05D005812 1.0e-41 173.3 107 73.8
Duzib128G0567 Durio zibethinus HOM05D004768 ORTHO05D005812 1.3e-41 172.9 107 73.8
MSTRG.10364 Avicennia marina HOM05D004768 ORTHO05D005812 1.7e-41 172.6 107 75.7
Atru.chr8.1546 Acer truncatum HOM05D004768 ORTHO05D005812 2.2e-41 172.2 108 71.3
Gohir.D01G195900 Gossypium hirsutum HOM05D004768 ORTHO05D005812 2.2e-41 172.2 107 72.9
CDE02G3328 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 2.9e-41 171.8 107 73.8
SalBow7G2666 Salvia bowleyana HOM05D004768 ORTHO05D005812 3.8e-41 171.4 106 72.6
CANSAT78G2462 Cannabis sativa HOM05D004768 ORTHO05D005812 5.0e-41 171.0 107 72.0
MD12G1035900 Malus domestica HOM05D004768 ORTHO05D005812 5.0e-41 171.0 99 80.8
PGSC0003DMG400016841 Solanum tuberosum HOM05D004768 ORTHO05D005812 5.0e-41 171.0 107 72.9
MD14G1022600 Malus domestica HOM05D004768 ORTHO05D005812 6.5e-41 170.6 99 79.8
Sopen09g029240 Solanum pennellii HOM05D004768 ORTHO05D005812 6.5e-41 170.6 107 72.0
Nitab4.5_0001107g0160 Nicotiana tabacum HOM05D004768 ORTHO05D005812 8.5e-41 170.2 107 72.9
Oeu047201.1 Olea europaea HOM05D004768 ORTHO05D005812 1.1e-40 169.9 105 74.3
Sabra16G0123600 Salix brachista HOM05D000102 ORTHO05D005812 1.5e-40 169.5 103 76.7
PGR142G0725 Punica granatum HOM05D004768 ORTHO05D005812 4.2e-40 167.9 104 73.1
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 4.2e-40 167.9 103 75.7
VMungo1383G3473 Vigna mungo HOM05D004768 ORTHO05D005812 4.2e-40 167.9 99 80.8
Glyma.03G195400 Glycine max HOM05D004768 ORTHO05D005812 5.5e-40 167.5 99 79.8
Prupe.7G110600 Prunus persica HOM05D004768 ORTHO05D005812 5.5e-40 167.5 98 78.6
Solyc09g074400.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 5.5e-40 167.5 107 71.0
Lj2A136G54 Lonicera japonica HOM05D004768 ORTHO05D005812 7.2e-40 167.2 108 74.1
Potri.001G221000 Populus trichocarpa HOM05D004768 ORTHO05D005812 7.2e-40 167.2 106 74.5
Phvul.001G190000 Phaseolus vulgaris HOM05D004768 ORTHO05D005812 9.4e-40 166.8 99 79.8
QL07p039071 Quercus lobata HOM05D004768 ORTHO05D005812 2.1e-39 165.6 111 70.3
CiPaw.09G013600 Carya illinoinensis HOM05D004768 ORTHO05D005812 3.6e-39 164.9 107 70.1
Ca_09003_v3 Cicer arietinum L. HOM05D004768 ORTHO05D005812 3.6e-39 164.9 101 77.2
Ciclev10012077m.g Citrus clementina HOM05D004768 ORTHO05D005812 3.6e-39 164.9 108 73.1
DCAR_009163 Daucus carota HOM05D004768 ORTHO05D005812 3.6e-39 164.9 104 73.1
Oeu056927.1 Olea europaea HOM05D004768 ORTHO05D005812 4.7e-39 164.5 107 72.0
QL07p038809 Quercus lobata HOM05D004768 ORTHO05D005812 4.7e-39 164.5 111 70.3
Lj1g0007409 Lotus japonicus HOM05D004768 ORTHO05D005812 6.1e-39 164.1 99 77.8
Peaxi162Scf00290g00062 Petunia axillaris HOM05D004768 ORTHO05D005812 8.0e-39 163.7 105 71.4
Psat3g033480 Pisum sativum HOM05D004768 ORTHO05D005812 1.0e-38 163.3 99 78.8
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 1.8e-38 162.5 103 73.8
SGA_v2.0_scaffold184G39961 Striga asiatica HOM05D004768 ORTHO05D005812 1.8e-38 162.5 104 69.2
Haze_19607 Corylus avellana HOM05D004768 ORTHO05D005812 2.3e-38 162.2 107 69.2
Medtr7g104550 Medicago truncatula HOM05D004768 ORTHO05D005812 3.0e-38 161.8 99 77.8
TPR.G19532 Trifolium pratense HOM05D004768 ORTHO05D005812 3.0e-38 161.8 103 74.8
Sc02g0000880 Simmondsia chinensis HOM05D004768 ORTHO05D005812 4.0e-38 161.4 103 74.8
Lalb_Chr20g0111731 Lupinus albus HOM05D004768 ORTHO05D005812 5.2e-38 161.0 101 76.2
CiPaw.10G009400 Carya illinoinensis HOM05D004768 ORTHO05D005812 6.7e-38 160.6 107 70.1
HPP92_013808 Vanilla planifolia HOM05D004768 ORTHO05D005812 1.2e-37 159.8 107 68.2
Actinidia05433 Actinidia chinensis HOM05D004768 ORTHO05D005812 1.5e-37 159.5 108 71.3
CDE08G0455 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 1.5e-37 159.5 95 74.7
SEGI_40271 Sequoiadendron giganteum HOM05D004768 ORTHO05D005812 2.0e-37 159.1 100 71.0
Aa31LG5G9700 Aethionema arabicum HOM05D004768 ORTHO05D005812 1.7e-36 156.0 107 69.2
HanXRQChr05g0133111 Helianthus annuus HOM05D004768 ORTHO05D005812 1.7e-36 156.0 98 75.5
Potri.002G212800 Populus trichocarpa HOM05D004768 ORTHO05D005812 2.2e-36 155.6 107 72.9
FAN02G2744 Fragaria x ananassa HOM05D004768 ORTHO05D005812 6.3e-36 154.1 99 70.7
RcHm_v2.0_Chr3g0473611 Rosa chinensis HOM05D004768 ORTHO05D005812 6.3e-36 154.1 99 72.7
THA.LOC104816391 Tarenaya hassleriana HOM05D004768 ORTHO05D005812 1.1e-35 153.3 108 68.5
unitig_746.g26778 Utricularia gibba HOM05D004768 ORTHO05D005812 1.1e-35 153.3 108 67.6
AL4G18210 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 2.4e-35 152.1 108 67.6
AT2G26060 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 2.4e-35 152.1 108 67.6
Sp4g05920 Schrenkiella parvula HOM05D004768 ORTHO05D005812 2.4e-35 152.1 109 67.0
FAN05G3800 Fragaria x ananassa HOM05D004768 ORTHO05D005812 5.3e-35 151.0 99 69.7
FAN05G5395 Fragaria x ananassa HOM05D004768 ORTHO05D005812 5.3e-35 151.0 99 69.7
FAN14G4330 Fragaria x ananassa HOM05D004768 ORTHO05D005812 5.3e-35 151.0 99 69.7
Carub.0004s0588 Capsella rubella HOM05D004768 ORTHO05D005812 7.0e-35 150.6 108 66.7
FAN09G1393 Fragaria x ananassa HOM05D004768 ORTHO05D005812 7.0e-35 150.6 99 69.7
Thhalv10002028m.g Eutrema salsugineum HOM05D004768 ORTHO05D005812 9.1e-35 150.2 108 68.5
arahy.Tifrunner.gnm1.ann1.F6QZS0 Arachis hypogaea HOM05D004768 ORTHO05D005812 1.2e-34 149.8 103 71.8
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 1.6e-34 149.4 108 68.5
FvH4_6g18650 Fragaria vesca HOM05D004768 ORTHO05D005812 1.6e-34 149.4 99 68.7
BcaB08g35238 Brassica carinata HOM05D004768 ORTHO05D005812 2.0e-34 149.1 109 67.0
arahy.Tifrunner.gnm1.ann1.UHNL6N Arachis hypogaea HOM05D004768 ORTHO05D005812 3.5e-34 148.3 103 69.9
Hund03983 Selenicereus undatus HOM05D004768 ORTHO05D005812 5.9e-34 147.5 107 66.4
Lsat_1_v5_gn_5_164801 Lactuca sativa HOM05D004768 ORTHO05D005812 1.3e-33 146.4 104 70.2
AUR62017616 Chenopodium quinoa HOM05D004768 ORTHO05D005812 5.0e-33 144.4 99 69.7
EL10Ac4g08441 Beta vulgaris HOM05D004768 ORTHO05D005812 1.9e-32 142.5 107 66.4
Ah.01g002000 Amaranthus hybridus HOM05D000289 ORTHO05D000208 9.4e-32 140.2 99 68.7
A08p05150 Brassica napus HOM05D004768 ORTHO05D005812 9.4e-32 140.2 108 65.7
BraA08t32532Z Brassica rapa HOM05D004768 ORTHO05D005812 9.4e-32 140.2 108 65.7
HanXRQChr01g0001951 Helianthus annuus HOM05D004768 ORTHO05D005812 9.4e-32 140.2 103 67.0
Os07g0252000 Oryza sativa ssp. japonica HOM05D004768 ORTHO05D005812 5.2e-30 134.4 98 64.3
Carub.0007s0749 Capsella rubella HOM05D004768 ORTHO05D005812 1.5e-29 132.9 97 64.9
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.5e-29 132.9 86 73.3
AagrBONN_evm.TU.Sc2ySwM_344.1733 Anthoceros agrestis HOM05D004768 ORTHO05D005812 2.0e-29 132.5 99 64.6
vmacro07406 Vaccinium macrocarpon HOM05D004768 ORTHO05D005812 2.0e-29 132.5 198 39.9
AL7G18690 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 4.4e-29 131.3 105 61.9
DCAR_020747 Daucus carota HOM05D004768 ORTHO05D005812 5.9e-26 120.9 99 56.6
BolC8t47355H Brassica oleracea HOM05D004768 ORTHO05D005812 3.8e-25 118.2 108 56.5
SMO239G0020 Selaginella moellendorffii HOM05D004768 ORTHO05D005812 8.6e-25 117.1 100 59.0
Sopen09g004150 Solanum pennellii HOM05D004768 ORTHO05D005812 1.5e-24 116.3 107 57.0
Pp3c21_14500 Physcomitrium patens HOM05D004768 ORTHO05D005812 1.9e-24 115.9 99 54.5
Solyc09g009410.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 5.7e-21 104.4 107 54.2
GSVIVG01033839001 Vitis vinifera HOM05D004768 ORTHO05D005812 1.3e-20 103.2 76 65.8
Cre08.g374400 Chlamydomonas reinhardtii HOM05D004768 ORTHO05D005812 2.2e-20 102.4 134 41.0
BcaC07g40836 Brassica carinata HOM05D004768 ORTHO05D005812 8.6e-17 90.5 74 59.5
C08p38320 Brassica napus HOM05D004768 ORTHO05D005812 8.6e-17 90.5 74 59.5
BolC8t51408H Brassica oleracea HOM05D004768 ORTHO05D005812 8.6e-17 90.5 74 59.5
A09p55390 Brassica napus HOM05D004768 ORTHO05D005812 2.5e-16 89.0 74 58.1
BraA09t40941Z Brassica rapa HOM05D004768 ORTHO05D005812 2.5e-16 89.0 74 58.1
SalBow1G7826 Salvia bowleyana HOM05D004768 ORTHO05D005812 3.3e-16 88.6 93 53.8
SHI23990 Sapria himalayana HOM05D000002 ORTHO05D000001 3.3e-16 88.6 60 63.3
AT4G32990 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 9.5e-16 87.0 125 42.4
SalBow3G0715 Salvia bowleyana HOM05D004768 ORTHO05D005812 2.8e-15 85.5 93 53.8
C08p05390 Brassica napus HOM05D004768 ORTHO05D005812 1.4e-14 83.2 108 44.4
CBR_g39931 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-14 82.0 80 50.0
DCAR_020750 Daucus carota HOM05D004768 ORTHO05D005812 4.4e-13 78.2 92 41.3
BcaC07g37166 Brassica carinata HOM05D004768 ORTHO05D005812 2.9e-12 75.5 39 87.2
Mapoly0001s0287 Marchantia polymorpha HOM05D004768 ORTHO05D005812 3.5e-10 68.6 63 50.8
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 4.6e-10 68.2 40 75.0
SGA_v2.0_scaffold214G42258 Striga asiatica HOM05D002634 ORTHO05D003100 4.3e-08 61.6 107 37.4
Migut.C00519 Erythranthe guttata HOM05D002634 ORTHO05D003100 9.5e-08 60.5 104 36.5
Aqoxy3G02763 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 3.6e-07 58.5 116 35.3
Lalb_Chr08g0245421 Lupinus albus HOM05D002634 ORTHO05D003100 4.7e-07 58.2 111 35.1
Potri.014G136700 Populus trichocarpa HOM05D004768 ORTHO05D005812 6.2e-07 57.8 30 86.7
PSO541G4236 Papaver somniferum HOM05D002634 ORTHO05D003100 2.3e-06 55.8 107 33.6
MELO3C007593.2 Cucumis melo HOM05D002634 ORTHO05D003100 3.1e-06 55.5 106 36.8
PSO782G2206 Papaver somniferum HOM05D002634 ORTHO05D003100 3.1e-06 55.5 107 34.6
arahy.Tifrunner.gnm1.ann1.H8DGBI Arachis hypogaea HOM05D002634 ORTHO05D003100 4.0e-06 55.1 106 36.8
Phvul.009G068800 Phaseolus vulgaris HOM05D002634 ORTHO05D003100 4.0e-06 55.1 106 34.0
CsaV3_6G043670 Cucumis sativus L. HOM05D002634 ORTHO05D003100 5.2e-06 54.7 106 36.8
ClCG01G017150 Citrullus lanatus HOM05D002634 ORTHO05D003100 6.8e-06 54.3 108 35.2
Glyma.06G043800 Glycine max HOM05D002634 ORTHO05D003100 6.8e-06 54.3 106 34.0
Cre05.g236250 Chlamydomonas reinhardtii HOM05D010245 ORTHO05D141580 8.9e-06 53.9 72 43.1
unitig_8.g3367 Utricularia gibba HOM05D002634 ORTHO05D003100 8.9e-06 53.9 104 35.6


User provided reference genes

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