Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 9.7e-99 363.6 201 100.0
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 2.5e-86 322.4 201 88.6
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 2.6e-51 206.1 201 61.7
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 2.9e-50 202.6 184 63.0
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 2.0e-48 196.4 169 65.7
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 4.6e-48 195.3 209 58.9
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 6.0e-48 194.9 199 61.3
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 5.0e-47 191.8 205 59.0
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 4.3e-46 188.7 160 64.4
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.6e-45 186.8 171 62.6
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 8.0e-45 184.5 174 61.5
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 1.4e-44 183.7 192 59.4
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 3.1e-44 182.6 167 62.3
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 5.2e-44 181.8 196 55.1
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 8.9e-44 181.0 187 56.7
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 2.0e-43 179.9 175 57.7
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 2.6e-43 179.5 178 56.2
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 3.4e-43 179.1 182 59.9
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 4.4e-43 178.7 167 63.5
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 5.8e-43 178.3 175 57.1
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 7.5e-43 177.9 190 57.4
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 7.5e-43 177.9 179 55.3
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 1.3e-42 177.2 202 53.5
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 3.7e-42 175.6 172 60.5
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 1.4e-41 173.7 160 60.6
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 2.4e-41 172.9 176 59.7
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 2.4e-41 172.9 188 56.4
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 3.2e-41 172.6 179 53.6
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 5.4e-41 171.8 170 58.8
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 1.2e-40 170.6 169 57.4
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 1.2e-40 170.6 169 58.6
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 7.8e-40 167.9 200 53.0
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 1.0e-39 167.5 162 59.9
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 1.7e-39 166.8 180 56.7
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.0e-39 166.0 175 56.0
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 3.9e-39 165.6 163 60.7
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 5.1e-39 165.2 175 56.0
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 5.1e-39 165.2 178 55.6
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 6.6e-39 164.9 171 55.6
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.5e-38 162.9 175 54.9
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 3.3e-38 162.5 174 56.9
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.2e-37 160.6 175 54.9
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 1.6e-37 160.2 181 55.8
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 1.6e-37 160.2 173 53.2
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 2.1e-37 159.8 208 48.1
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 4.7e-37 158.7 173 53.8
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 4.7e-37 158.7 171 55.0
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 2.3e-36 156.4 168 54.8
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 3.1e-36 156.0 165 55.8
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 5.2e-36 155.2 201 49.3
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 6.8e-36 154.8 201 49.3
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 6.8e-36 154.8 179 54.7
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 1.5e-35 153.7 201 47.8
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 1.5e-35 153.7 177 51.4
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 1.5e-35 153.7 172 51.2
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 2.0e-35 153.3 211 47.4
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 3.4e-35 152.5 201 48.3
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 7.5e-35 151.4 178 53.4
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 9.9e-35 151.0 214 48.6
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 9.9e-35 151.0 201 47.8
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 1.7e-34 150.2 197 51.3
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 1.7e-34 150.2 201 47.8
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 2.2e-34 149.8 200 46.5
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 8.3e-34 147.9 178 48.3
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 1.1e-33 147.5 204 47.5
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 1.1e-33 147.5 205 46.8
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 1.4e-33 147.1 201 46.8
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 1.4e-33 147.1 201 46.8
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 3.2e-33 146.0 160 54.4
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 4.1e-33 145.6 201 45.8
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 4.1e-33 145.6 201 45.8
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 5.4e-33 145.2 178 50.0
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 5.4e-33 145.2 189 52.4
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.2e-32 144.1 175 49.7
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.2e-32 144.1 175 49.7
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 2.1e-32 143.3 201 45.3
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 2.7e-32 142.9 174 50.6
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 3.0e-31 139.4 171 47.4
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 5.1e-31 138.7 159 50.9
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 6.6e-31 138.3 178 47.2
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 2.5e-30 136.3 158 53.8
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 2.5e-30 136.3 203 47.8
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 2.5e-30 136.3 158 49.4
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 2.1e-29 133.3 173 50.3
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 6.2e-29 131.7 186 46.2
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 8.1e-29 131.3 208 43.8
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 2.4e-28 129.8 165 48.5
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 1.2e-27 127.5 222 41.9
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 7.6e-27 124.8 175 45.7
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 2.2e-26 123.2 230 40.0
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 3.8e-26 122.5 204 44.1
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 4.9e-26 122.1 161 49.1
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 4.9e-26 122.1 169 47.3
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 8.4e-26 121.3 201 41.8
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 1.1e-25 120.9 201 41.3
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 3.2e-25 119.4 188 45.7
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 5.4e-25 118.6 197 43.7
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 7.1e-25 118.2 187 44.4
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 1.6e-24 117.1 201 41.3
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 1.6e-24 117.1 201 44.3
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 1.6e-24 117.1 171 48.5
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 2.1e-24 116.7 109 64.2
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 4.6e-24 115.5 154 50.0
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 4.6e-24 115.5 154 50.0
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 3.0e-23 112.8 201 44.8
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 5.1e-23 112.1 178 43.8
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 3.3e-22 109.4 167 44.3
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 4.3e-22 109.0 172 44.2
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 1.2e-21 107.5 201 41.8
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 1.8e-20 103.6 175 42.3
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 2.4e-20 103.2 123 52.8
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 6.9e-20 101.7 201 40.3
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 6.9e-20 101.7 154 40.3
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 2.0e-19 100.1 105 58.1
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 2.0e-19 100.1 201 37.3
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 7.6e-19 98.2 171 42.1
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 9.9e-19 97.8 175 40.0
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 2.2e-18 96.7 124 50.0
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 2.2e-18 96.7 188 42.0
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 8.4e-18 94.7 176 40.3
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 4.2e-17 92.4 145 42.1
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 1.2e-16 90.9 180 40.6
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 2.1e-16 90.1 178 40.4
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 4.6e-16 89.0 89 62.9
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 3.0e-15 86.3 105 55.2
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 8.7e-15 84.7 126 43.7
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 3.3e-14 82.8 180 36.7
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.6e-14 82.0 57 75.4
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.1e-12 77.8 191 35.6
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.1e-12 77.8 191 35.6
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 1.8e-12 77.0 158 42.4
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.8e-12 77.0 158 42.4
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 5.3e-12 75.5 105 49.5
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 9.0e-12 74.7 119 42.0
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 1.2e-11 74.3 162 35.8
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 3.4e-11 72.8 157 36.9
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 5.8e-11 72.0 127 44.9
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 9.9e-11 71.2 69 55.1
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 7.1e-09 65.1 123 43.1
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 1.6e-08 63.9 105 47.6
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 2.1e-08 63.5 72 44.4
arahy.Tifrunner.gnm1.ann1.125U9W Arachis hypogaea HOM05D005061 ORTHO05D006001 2.7e-08 63.2 105 45.7
arahy.Tifrunner.gnm1.ann1.57E4K5 Arachis hypogaea HOM05D000877 ORTHO05D026902 4.6e-08 62.4 72 55.6
arahy.Tifrunner.gnm1.ann1.I6PPQF Arachis hypogaea HOM05D000877 ORTHO05D026902 4.6e-08 62.4 72 55.6
Pp3c15_23810 Physcomitrium patens HOM05D024020 ORTHO05D023538 6.0e-08 62.0 127 37.8
Pp3c15_23812 Physcomitrium patens HOM05D024020 ORTHO05D023538 6.0e-08 62.0 127 37.8
Actinidia38751 Actinidia chinensis HOM05D002342 ORTHO05D002407 4.3e-06 55.8 69 58.0
arahy.Tifrunner.gnm1.ann1.02VCKU Arachis hypogaea HOM05D000115 ORTHO05D026902 7.4e-06 55.1 64 56.2


User provided reference genes

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