Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.5e-223 778.5 402 100.0
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.8e-189 666.0 402 85.3
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 2.8e-166 589.0 399 76.4
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 9.1e-165 583.9 402 74.4
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 2.7e-164 582.4 402 74.6
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 5.0e-163 578.2 399 75.2
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 4.2e-162 575.1 399 74.7
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 2.1e-161 572.8 399 72.9
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.5e-159 566.6 401 72.1
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 7.5e-159 564.3 399 70.9
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 9.8e-159 563.9 403 70.7
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 2.2e-158 562.8 398 70.6
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 7.0e-157 557.8 403 71.7
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 2.0e-156 556.2 402 70.1
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 5.9e-156 554.7 399 69.2
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 7.7e-156 554.3 398 70.1
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 8.5e-155 550.8 401 72.1
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 3.2e-154 548.9 396 68.7
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 5.5e-154 548.1 399 68.7
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 5.5e-154 548.1 398 68.8
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 9.5e-154 547.4 398 69.6
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 4.7e-153 545.0 400 71.2
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 1.0e-152 543.9 398 68.1
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 2.3e-152 542.7 402 67.7
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.0e-152 542.0 393 69.5
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 8.8e-152 540.8 400 69.2
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 1.5e-151 540.0 399 68.2
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 2.0e-151 539.7 396 69.2
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.4e-151 538.9 398 68.3
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 7.5e-151 537.7 399 68.7
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.8e-151 537.3 393 69.0
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 2.2e-150 536.2 402 66.7
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 2.8e-150 535.8 402 67.4
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 6.3e-150 534.6 399 69.7
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 8.3e-150 534.3 398 70.9
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 8.3e-150 534.3 402 66.2
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 3.1e-149 532.3 399 67.9
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 3.1e-149 532.3 399 68.7
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 5.4e-149 531.6 402 66.9
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 9.2e-149 530.8 402 64.9
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.2e-148 530.4 402 66.9
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 1.6e-148 530.0 402 65.4
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 1.6e-148 530.0 399 68.4
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 3.5e-148 528.9 399 68.9
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 2.3e-147 526.2 402 64.9
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 3.3e-146 522.3 402 65.2
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 5.6e-146 521.5 402 65.2
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 9.5e-146 520.8 396 65.7
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 1.0e-144 517.3 394 66.8
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 1.2e-143 513.8 402 64.2
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 2.2e-142 509.6 399 64.7
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 6.4e-142 508.1 402 64.2
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 1.4e-141 506.9 399 63.7
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 5.4e-141 505.0 397 65.2
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.6e-140 503.4 399 64.7
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.6e-140 503.4 396 65.2
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 2.7e-140 502.7 402 62.7
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 4.6e-140 501.9 399 63.2
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 2.3e-139 499.6 399 64.9
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 1.1e-138 497.3 402 62.7
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 1.9e-138 496.5 374 67.6
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 2.5e-138 496.1 396 64.1
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 4.7e-137 491.9 399 63.4
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 6.2e-137 491.5 402 62.9
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 6.2e-137 491.5 399 63.4
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 6.2e-137 491.5 406 62.6
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 1.0e-136 490.7 399 63.7
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 3.1e-136 489.2 398 63.3
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 4.0e-136 488.8 399 63.4
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 8.9e-136 487.6 432 58.1
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 2.0e-135 486.5 402 62.9
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 4.4e-135 485.3 395 63.8
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 7.5e-135 484.6 356 69.7
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 2.2e-134 483.0 399 63.2
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 4.9e-134 481.9 402 60.0
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 8.3e-134 481.1 392 63.3
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.4e-133 480.3 402 59.7
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 5.4e-133 478.4 396 63.9
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 5.4e-133 478.4 400 60.0
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.7e-132 476.1 399 61.4
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 3.5e-132 475.7 402 60.0
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 1.7e-131 473.4 393 62.6
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 1.2e-129 467.2 403 59.6
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 3.6e-129 465.7 446 56.5
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 8.1e-129 464.5 398 59.8
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 8.1e-129 464.5 385 62.9
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 7.1e-125 451.4 399 58.6
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 2.7e-124 449.5 401 55.1
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 1.0e-123 447.6 400 57.8
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 2.3e-123 446.4 399 59.1
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 5.1e-123 445.3 400 58.0
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 6.6e-123 444.9 400 58.0
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 4.3e-122 442.2 400 57.2
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 5.6e-122 441.8 400 56.5
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 1.6e-121 440.3 398 58.5
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 2.1e-121 439.9 400 56.2
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 4.7e-121 438.7 400 56.8
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 6.2e-121 438.3 397 56.4
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 2.3e-120 436.4 404 58.2
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 8.9e-120 434.5 400 55.8
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 8.9e-120 434.5 400 55.8
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 9.9e-119 431.0 397 55.7
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 1.7e-118 430.3 399 56.4
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 9.2e-117 424.5 400 55.5
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 2.7e-116 422.9 398 57.5
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 3.5e-116 422.5 319 67.1
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 2.6e-111 406.4 330 64.5
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 1.9e-109 400.2 405 52.3
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 4.6e-108 395.6 335 61.5
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 1.7e-107 393.7 401 51.9
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 9.0e-104 381.3 324 63.3
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 7.6e-103 378.3 315 62.5
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.5e-95 354.0 299 62.2
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 4.9e-94 349.0 365 51.0
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.9e-88 328.6 240 70.8
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.0e-86 324.7 405 42.0
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.0e-86 324.7 401 44.6
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 8.4e-86 321.6 243 67.5
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.4e-85 320.9 401 43.6
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 1.2e-84 317.8 371 49.9
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 2.0e-79 300.4 402 43.8
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 2.5e-77 293.5 389 40.1
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.1e-72 278.1 234 61.1
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 7.4e-58 228.8 371 41.8
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 4.8e-57 226.1 371 41.0
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 1.3e-54 218.0 295 44.1
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 3.1e-48 196.8 328 41.2
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 1.1e-45 188.3 147 68.7
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 8.0e-44 182.2 294 42.5
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 8.0e-44 182.2 169 54.4
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.8e-43 181.0 128 72.7
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 2.0e-39 167.5 219 45.2
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 3.0e-35 153.7 246 40.7
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 7.8e-31 139.0 93 68.8
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 3.3e-29 133.7 99 66.7
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 8.9e-27 125.6 91 70.3
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.0e-22 112.1 132 52.3
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 8.6e-22 109.0 185 36.2
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.9e-21 107.8 132 51.5
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.5e-21 107.5 129 51.2
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 4.3e-21 106.7 196 35.2
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 1.8e-19 101.3 143 47.6
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 2.6e-18 97.4 88 60.2
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 4.4e-18 96.7 75 65.3
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.0e-14 85.5 62 69.4
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 8.6e-14 82.4 69 62.3
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.5e-13 80.9 64 62.5
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 3.6e-12 77.0 70 52.9
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 4.4e-10 70.1 74 51.4
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 1.7e-09 68.2 63 47.6
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 1.1e-08 65.5 119 33.6
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 2.1e-07 61.2 59 49.2
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 3.5e-07 60.5 63 41.3
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 6.0e-07 59.7 42 69.0
arahy.Tifrunner.gnm1.ann1.JG00WY Arachis hypogaea HOM05D004114 ORTHO05D004667 1.7e-06 58.2 47 55.3
C05p12260 Brassica napus HOM05D004114 ORTHO05D024134 1.7e-06 58.2 66 50.0
BolC2t10474H Brassica oleracea HOM05D004114 ORTHO05D024134 1.7e-06 58.2 64 50.0
BolC2t10479H Brassica oleracea HOM05D004114 ORTHO05D024134 1.7e-06 58.2 64 50.0


User provided reference genes

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