Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR048G0001 Trochodendron aralioides HOM05D032931 ORTHO05D005600 1.1e-44 183.0 92 100.0
TAR636G2680 Trochodendron aralioides HOM05D032931 ORTHO05D005600 1.1e-44 183.0 92 100.0
TAR633G2452 Trochodendron aralioides HOM05D032931 ORTHO05D005600 2.3e-39 165.2 92 90.2
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 3.3e-09 65.1 35 94.3
TAR376G1204 Trochodendron aralioides HOM05D000760 ORTHO05D000618 3.6e-08 61.6 51 62.7
vmacro19895 Vaccinium macrocarpon HOM05D000760 ORTHO05D000618 3.6e-08 61.6 51 62.7
TPR.G2116 Trifolium pratense HOM05D000760 ORTHO05D000618 8.0e-08 60.5 64 50.0
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 1.0e-07 60.1 36 86.1
Rhsim11G0129600 Rhododendron simsii HOM05D000760 ORTHO05D000618 1.4e-07 59.7 52 57.7
CSS0005433 Camellia sinensis var. sinensis HOM05D000760 ORTHO05D000618 2.3e-07 58.9 51 58.8
CSS0023627 Camellia sinensis var. sinensis HOM05D000760 ORTHO05D000618 2.3e-07 58.9 51 58.8
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 2.3e-07 58.9 36 86.1
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 2.3e-07 58.9 36 80.6
Actinidia00208 Actinidia chinensis HOM05D000760 ORTHO05D000618 3.0e-07 58.5 52 59.6
Dinv19365 Davidia involucrata HOM05D000760 ORTHO05D000618 4.0e-07 58.2 52 57.7
Phvul.009G123400 Phaseolus vulgaris HOM05D000760 ORTHO05D000618 4.0e-07 58.2 51 52.9
Actinidia26145 Actinidia chinensis HOM05D000760 ORTHO05D000618 5.2e-07 57.8 51 58.8
Lsat_1_v5_gn_1_12301 Lactuca sativa HOM05D000760 ORTHO05D000618 5.2e-07 57.8 47 59.6
TAR362G0893 Trochodendron aralioides HOM05D000760 ORTHO05D000618 5.2e-07 57.8 52 55.8
GSVIVG01022966001 Vitis vinifera HOM05D000760 ORTHO05D000618 5.2e-07 57.8 52 57.7
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 6.8e-07 57.4 42 76.2
Gohir.A04G127200 Gossypium hirsutum HOM05D000760 ORTHO05D000618 6.8e-07 57.4 51 60.8
Gohir.D04G172000 Gossypium hirsutum HOM05D000760 ORTHO05D000618 6.8e-07 57.4 51 60.8
Gorai.012G161000 Gossypium raimondii HOM05D000760 ORTHO05D000618 6.8e-07 57.4 51 60.8
Potri.001G210900 Populus trichocarpa HOM05D000760 ORTHO05D000618 6.8e-07 57.4 52 57.7
QL11p018468 Quercus lobata HOM05D000760 ORTHO05D000618 8.9e-07 57.0 52 55.8
Eucgr.G00581 Eucalyptus grandis HOM05D000760 ORTHO05D000618 1.2e-06 56.6 52 57.7
TAR626G1710 Trochodendron aralioides HOM05D000760 ORTHO05D000618 1.2e-06 56.6 69 49.3
TAR633G2230 Trochodendron aralioides HOM05D000760 ORTHO05D000618 1.2e-06 56.6 52 55.8
MELO3C014382.2 Cucumis melo HOM05D000760 ORTHO05D000618 1.5e-06 56.2 52 55.8
Hma1.2p1_0217F.1_g092020 Hydrangea macrophylla HOM05D000760 ORTHO05D000618 1.5e-06 56.2 82 46.3
TAR381G1697 Trochodendron aralioides HOM05D000760 ORTHO05D000618 1.5e-06 56.2 52 55.8
Cpa.g.sc113.62 Carica papaya HOM05D000760 ORTHO05D000618 2.0e-06 55.8 52 53.8
COL.COLO4_17868 Corchorus olitorius HOM05D000760 ORTHO05D000618 2.0e-06 55.8 52 57.7
Dinv24280 Davidia involucrata HOM05D000760 ORTHO05D000618 2.6e-06 55.5 52 55.8
Duzib248G0425 Durio zibethinus HOM05D000760 ORTHO05D000618 2.6e-06 55.5 52 57.7
TAR628G0496 Trochodendron aralioides HOM05D000760 ORTHO05D000618 2.6e-06 55.5 52 53.8
Haze_00467 Corylus avellana HOM05D000760 ORTHO05D000618 3.4e-06 55.1 65 47.7
Dinv40401 Davidia involucrata HOM05D000760 ORTHO05D000618 3.4e-06 55.1 47 59.6
Duzib052G0018 Durio zibethinus HOM05D000760 ORTHO05D000618 3.4e-06 55.1 52 55.8
MBI06_g20719_MAGBIO Magnolia biondii HOM05D000760 ORTHO05D000618 3.4e-06 55.1 52 55.8
Thecc.02G038400 Theobroma cacao HOM05D000760 ORTHO05D000618 3.4e-06 55.1 52 55.8
Lj1g0002192 Lotus japonicus HOM05D000760 ORTHO05D000618 4.4e-06 54.7 51 51.0
Nitab4.5_0002245g0050 Nicotiana tabacum HOM05D000760 ORTHO05D000618 4.4e-06 54.7 52 55.8
Nitab4.5_0007420g0010 Nicotiana tabacum HOM05D000760 ORTHO05D000618 4.4e-06 54.7 52 55.8
Os02g0768200 Oryza sativa ssp. japonica HOM05D000760 ORTHO05D000618 4.4e-06 54.7 52 55.8
CAN.G1577.15 Capsicum annuum HOM05D000760 ORTHO05D000618 5.7e-06 54.3 52 50.0
Cfa015999 Carpinus fangiana HOM05D000760 ORTHO05D009205 5.7e-06 54.3 61 49.2
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 5.7e-06 54.3 36 72.2
CsaV3_6G037340 Cucumis sativus L. HOM05D000760 ORTHO05D000618 5.7e-06 54.3 52 53.8
Lalb_Chr11g0065811 Lupinus albus HOM05D000760 ORTHO05D000618 5.7e-06 54.3 44 59.1
Manes.02G161900 Manihot esculenta HOM05D000760 ORTHO05D000618 5.7e-06 54.3 52 53.8
VMungo0251G3078 Vigna mungo HOM05D000760 ORTHO05D000618 5.7e-06 54.3 52 55.8
Peaxi162Scf00011g00355 Petunia axillaris HOM05D000760 ORTHO05D000618 7.5e-06 53.9 52 53.8
Zm00001eb256110 Zea mays HOM05D000760 ORTHO05D000618 7.5e-06 53.9 52 55.8
CsaV3_3G018860 Cucumis sativus L. HOM05D000760 ORTHO05D000618 9.8e-06 53.5 52 51.9
Dinv27335 Davidia involucrata HOM05D000760 ORTHO05D000618 9.8e-06 53.5 47 57.4
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 9.8e-06 53.5 36 72.2
QL09p035517 Quercus lobata HOM05D000760 ORTHO05D000618 9.8e-06 53.5 61 47.5
SGA_v2.0_scaffold110G31299 Striga asiatica HOM05D000760 ORTHO05D000618 9.8e-06 53.5 52 51.9
TWI59G1059 Tripterygium wilfordii HOM05D000760 ORTHO05D000618 9.8e-06 53.5 52 55.8


User provided reference genes

Program Settings