Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2570 Trochodendron aralioides HOM05D003698 ORTHO05D004320 1.5e-80 302.8 149 100.0
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 3.5e-13 79.0 81 56.8
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 4.6e-13 78.6 77 57.1
Haze_05812 Corylus avellana HOM05D003698 ORTHO05D004320 4.6e-13 78.6 63 66.7
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 6.0e-13 78.2 71 63.4
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 7.9e-13 77.8 64 65.6
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 1.0e-12 77.4 84 54.8
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.0e-12 77.4 90 51.1
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.3e-12 77.0 84 54.8
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.3e-12 77.0 75 58.7
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 1.8e-12 76.6 73 61.6
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.8e-12 76.6 83 54.2
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 1.8e-12 76.6 75 57.3
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 2.3e-12 76.3 83 53.0
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 2.3e-12 76.3 72 56.9
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 3.0e-12 75.9 72 58.3
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 3.0e-12 75.9 72 58.3
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 3.0e-12 75.9 72 58.3
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 3.0e-12 75.9 81 54.3
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 3.0e-12 75.9 72 56.9
Cpa.g.c40434 Carica papaya HOM05D003698 ORTHO05D004320 3.0e-12 75.9 64 65.6
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 3.9e-12 75.5 72 56.9
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 3.9e-12 75.5 72 56.9
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 3.9e-12 75.5 72 56.9
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 3.9e-12 75.5 84 53.6
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 3.9e-12 75.5 75 57.3
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 3.9e-12 75.5 84 54.8
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 5.1e-12 75.1 72 55.6
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 5.1e-12 75.1 70 57.1
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 5.1e-12 75.1 77 58.4
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 5.1e-12 75.1 76 59.2
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 5.1e-12 75.1 72 56.9
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 5.1e-12 75.1 83 51.8
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 6.7e-12 74.7 72 56.9
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 6.7e-12 74.7 72 56.9
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 6.7e-12 74.7 84 51.2
MBI17_g19515_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 6.7e-12 74.7 75 56.0
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 6.7e-12 74.7 72 58.3
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 8.7e-12 74.3 72 56.9
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 8.7e-12 74.3 72 56.9
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 8.7e-12 74.3 72 56.9
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 8.7e-12 74.3 69 62.3
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 8.7e-12 74.3 72 56.9
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 8.7e-12 74.3 72 56.9
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 8.7e-12 74.3 72 56.9
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 8.7e-12 74.3 72 56.9
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 8.7e-12 74.3 72 56.9
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 8.7e-12 74.3 83 53.0
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 8.7e-12 74.3 84 53.6
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 8.7e-12 74.3 72 58.3
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 8.7e-12 74.3 72 56.9
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 8.7e-12 74.3 76 57.9
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 1.1e-11 73.9 84 51.2
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 1.1e-11 73.9 72 54.2
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 1.1e-11 73.9 69 62.3
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.1e-11 73.9 76 57.9
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 1.1e-11 73.9 76 57.9
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 1.1e-11 73.9 83 50.6
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 1.1e-11 73.9 83 50.6
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 1.1e-11 73.9 83 50.6
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 1.1e-11 73.9 75 57.3
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 1.1e-11 73.9 72 55.6
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 1.1e-11 73.9 76 56.6
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.1e-11 73.9 70 57.1
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 1.5e-11 73.6 72 55.6
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.5e-11 73.6 76 56.6
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 1.5e-11 73.6 83 51.8
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 1.5e-11 73.6 76 57.9
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 1.5e-11 73.6 77 54.5
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 1.5e-11 73.6 83 49.4
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 1.5e-11 73.6 72 55.6
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 1.9e-11 73.2 72 54.2
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 1.9e-11 73.2 72 55.6
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 1.9e-11 73.2 84 52.4
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 2.5e-11 72.8 72 55.6
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 2.5e-11 72.8 76 56.6
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 2.5e-11 72.8 83 48.2
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 2.5e-11 72.8 72 54.2
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 2.5e-11 72.8 76 55.3
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 3.3e-11 72.4 76 55.3
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 3.3e-11 72.4 64 59.4
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 3.3e-11 72.4 69 59.4
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 3.3e-11 72.4 72 54.2
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 3.3e-11 72.4 64 62.5
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 3.3e-11 72.4 76 53.9
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 3.3e-11 72.4 83 51.8
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 4.3e-11 72.0 64 62.5
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 4.3e-11 72.0 84 51.2
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 4.3e-11 72.0 72 54.2
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.3e-11 72.0 59 62.7
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.3e-11 72.0 59 62.7
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 5.6e-11 71.6 88 45.5
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 5.6e-11 71.6 83 49.4
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 5.6e-11 71.6 75 56.0
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 5.6e-11 71.6 64 60.9
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 5.6e-11 71.6 72 52.8
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 7.4e-11 71.2 64 59.4
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 7.4e-11 71.2 75 54.7
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 7.4e-11 71.2 84 50.0
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 7.4e-11 71.2 76 56.6
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 7.4e-11 71.2 69 60.9
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 7.4e-11 71.2 72 54.2
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 9.6e-11 70.9 83 50.6
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 9.6e-11 70.9 83 49.4
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 9.6e-11 70.9 83 50.6
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 9.6e-11 70.9 72 55.6
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 9.6e-11 70.9 64 60.9
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 9.6e-11 70.9 59 61.0
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 1.3e-10 70.5 72 54.2
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 1.3e-10 70.5 72 54.2
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 1.3e-10 70.5 76 56.6
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 1.3e-10 70.5 60 61.7
TPR.G40455 Trifolium pratense HOM05D003698 ORTHO05D004320 1.3e-10 70.5 63 60.3
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 1.6e-10 70.1 76 55.3
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 1.6e-10 70.1 74 55.4
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 1.6e-10 70.1 64 62.5
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 1.6e-10 70.1 58 62.1
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 1.6e-10 70.1 72 55.6
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 2.1e-10 69.7 76 53.9
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 2.1e-10 69.7 76 55.3
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 2.1e-10 69.7 75 53.3
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 2.1e-10 69.7 72 52.8
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 2.8e-10 69.3 72 54.2
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 2.8e-10 69.3 72 54.2
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 2.8e-10 69.3 74 52.7
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 4.8e-10 68.6 72 50.0
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 4.8e-10 68.6 72 50.0
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 4.8e-10 68.6 72 50.0
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 4.8e-10 68.6 72 50.0
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 4.8e-10 68.6 76 52.6
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 4.8e-10 68.6 84 48.8
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 4.8e-10 68.6 75 53.3
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 4.8e-10 68.6 72 54.2
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 6.2e-10 68.2 72 54.2
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 6.2e-10 68.2 77 53.2
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 6.2e-10 68.2 65 63.1
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 1.1e-09 67.4 72 50.0
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 1.1e-09 67.4 64 56.2
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.1e-09 67.4 69 55.1
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 1.4e-09 67.0 84 48.8
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.4e-09 67.0 69 53.6
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 1.8e-09 66.6 64 54.7
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 1.8e-09 66.6 76 53.9
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 2.4e-09 66.2 64 56.2
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 3.1e-09 65.9 75 52.0
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 5.3e-09 65.1 73 52.1
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 6.9e-09 64.7 64 54.7
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 2.0e-08 63.2 79 45.6
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 2.6e-08 62.8 72 47.2
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 3.4e-08 62.4 76 48.7
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 4.5e-08 62.0 75 49.3
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 9.9e-08 60.8 60 53.3
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 2.9e-07 59.3 72 45.8
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 7.1e-06 54.7 66 42.4


User provided reference genes

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