Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1760 Trochodendron aralioides HOM05D001202 ORTHO05D416005 6.1e-27 123.2 56 100.0
TAR624G1362 Trochodendron aralioides HOM05D001202 ORTHO05D001728 1.7e-21 105.1 51 92.2
TAR626G1827 Trochodendron aralioides HOM05D001202 ORTHO05D001728 2.3e-18 94.7 50 78.0
MBI16_g22135_MAGBIO Magnolia biondii HOM05D001202 ORTHO05D001728 1.4e-15 85.5 50 72.0
TAR629G2184 Trochodendron aralioides HOM05D001202 ORTHO05D001728 1.4e-15 85.5 50 76.0
arahy.Tifrunner.gnm1.ann1.6I306W Arachis hypogaea HOM05D001202 ORTHO05D001728 5.4e-15 83.6 51 70.6
arahy.Tifrunner.gnm1.ann1.HB8LVY Arachis hypogaea HOM05D001202 ORTHO05D001728 5.4e-15 83.6 51 70.6
TAR629G3175 Trochodendron aralioides HOM05D001202 ORTHO05D001728 5.4e-15 83.6 49 73.5
Dinv04398 Davidia involucrata HOM05D001202 ORTHO05D001728 2.7e-14 81.3 50 70.0
Lalb_Chr18g0057261 Lupinus albus HOM05D001202 ORTHO05D001728 1.0e-13 79.3 50 64.0
Glyma.09G013900 Glycine max HOM05D001202 ORTHO05D001728 3.0e-13 77.8 50 64.0
Glyma.15G118600 Glycine max HOM05D001202 ORTHO05D001728 3.0e-13 77.8 50 64.0
Aqoxy4G02340 Aquilegia oxysepala HOM05D001202 ORTHO05D001728 3.9e-13 77.4 50 64.0
PGR004G2341 Punica granatum HOM05D001202 ORTHO05D001728 3.9e-13 77.4 50 64.0
Potri.016G006400 Populus trichocarpa HOM05D001202 ORTHO05D001728 5.0e-13 77.0 50 64.0
Sabra16G0011200 Salix brachista HOM05D001202 ORTHO05D001728 5.0e-13 77.0 50 64.0
Prupe.4G004500 Prunus persica HOM05D001202 ORTHO05D001728 6.6e-13 76.6 50 66.0
CiPaw.10G081400 Carya illinoinensis HOM05D001202 ORTHO05D001728 8.6e-13 76.3 50 64.0
GSVIVG01005136001 Vitis vinifera HOM05D001202 ORTHO05D001728 8.6e-13 76.3 50 64.0
FAN21G3748 Fragaria x ananassa HOM05D001202 ORTHO05D001728 1.1e-12 75.9 50 68.0
Hma1.2p1_1175F.1_g263960 Hydrangea macrophylla HOM05D001202 ORTHO05D001728 1.1e-12 75.9 50 64.0
Lalb_Chr15g0088191 Lupinus albus HOM05D001202 ORTHO05D001728 1.5e-12 75.5 50 62.0
SalBow8G2450 Salvia bowleyana HOM05D001202 ORTHO05D001728 1.5e-12 75.5 50 64.0
vmacro03614 Vaccinium macrocarpon HOM05D001202 ORTHO05D001728 1.5e-12 75.5 50 60.0
Phvul.006G139600 Phaseolus vulgaris HOM05D001202 ORTHO05D001728 1.9e-12 75.1 50 64.0
Psat1g172880 Pisum sativum HOM05D001202 ORTHO05D001728 1.9e-12 75.1 50 68.0
VMungo0540G1650 Vigna mungo HOM05D001202 ORTHO05D001728 1.9e-12 75.1 50 64.0
Haze_07012 Corylus avellana HOM05D001202 ORTHO05D001728 2.5e-12 74.7 50 62.0
TPR.G10576 Trifolium pratense HOM05D001202 ORTHO05D001728 2.5e-12 74.7 50 64.0
FvH4_3g00390 Fragaria vesca HOM05D001202 ORTHO05D001728 3.3e-12 74.3 50 66.0
RcHm_v2.0_Chr5g0000591 Rosa chinensis HOM05D001202 ORTHO05D001728 3.3e-12 74.3 50 66.0
Sabra06G0004700 Salix brachista HOM05D001202 ORTHO05D001728 4.3e-12 73.9 50 62.0
MD05G1360800 Malus domestica HOM05D001202 ORTHO05D001728 5.6e-12 73.6 50 64.0
DCAR_025227 Daucus carota HOM05D001202 ORTHO05D001728 7.3e-12 73.2 51 64.7
DCAR_030836 Daucus carota HOM05D001202 ORTHO05D001728 7.3e-12 73.2 51 62.7
Nn1g03192 Nelumbo nucifera HOM05D001202 ORTHO05D001728 7.3e-12 73.2 50 66.0
MD10G1338400 Malus domestica HOM05D001202 ORTHO05D001728 9.5e-12 72.8 50 64.0
Potri.006G005800 Populus trichocarpa HOM05D001202 ORTHO05D001728 9.5e-12 72.8 50 62.0
Cc09_g00390 Coffea canephora HOM05D001202 ORTHO05D001728 1.2e-11 72.4 50 62.0
CiPaw.09G108400 Carya illinoinensis HOM05D001202 ORTHO05D001728 1.6e-11 72.0 51 60.8
CSS0036190 Camellia sinensis var. sinensis HOM05D001202 ORTHO05D001728 2.1e-11 71.6 50 62.0
Migut.H01627 Erythranthe guttata HOM05D001202 ORTHO05D001728 2.1e-11 71.6 50 62.0
FAN25G0082 Fragaria x ananassa HOM05D001202 ORTHO05D001728 2.1e-11 71.6 50 64.0
Oeu057023.1 Olea europaea HOM05D001202 ORTHO05D001728 2.1e-11 71.6 50 58.0
SGA_v2.0_scaffold239G43971 Striga asiatica HOM05D001202 ORTHO05D001728 2.1e-11 71.6 50 60.0
Thecc.06G240100 Theobroma cacao HOM05D001202 ORTHO05D001728 2.1e-11 71.6 50 62.0
Duzib160G0433 Durio zibethinus HOM05D001202 ORTHO05D001728 2.8e-11 71.2 50 62.0
Duzib235G0098 Durio zibethinus HOM05D001202 ORTHO05D001728 2.8e-11 71.2 50 62.0
Glyma.07G267900 Glycine max HOM05D001202 ORTHO05D001728 2.8e-11 71.2 50 56.0
Glyma.17G006000 Glycine max HOM05D001202 ORTHO05D001728 2.8e-11 71.2 50 58.0
Atru.chr1.2277 Acer truncatum HOM05D001202 ORTHO05D001728 3.6e-11 70.9 50 60.0
Actinidia02286 Actinidia chinensis HOM05D001202 ORTHO05D001728 3.6e-11 70.9 50 58.0
MSTRG.16051 Avicennia marina HOM05D001202 ORTHO05D001728 3.6e-11 70.9 50 58.0
Cpa.g.sc27.236 Carica papaya HOM05D001202 ORTHO05D001728 3.6e-11 70.9 51 64.7
Eucgr.L00156 Eucalyptus grandis HOM05D001202 ORTHO05D001728 3.6e-11 70.9 50 60.0
Lalb_Chr12g0195961 Lupinus albus HOM05D001202 ORTHO05D001728 3.6e-11 70.9 50 60.0
PGSC0003DMG400013299 Solanum tuberosum HOM05D001202 ORTHO05D001728 3.6e-11 70.9 50 54.0
COL.COLO4_31934 Corchorus olitorius HOM05D001202 ORTHO05D001728 4.7e-11 70.5 50 60.0
Lj6g0018645 Lotus japonicus HOM05D001202 ORTHO05D001728 4.7e-11 70.5 50 60.0
Manes.08G069900 Manihot esculenta HOM05D001202 ORTHO05D001728 4.7e-11 70.5 50 60.0
MSTRG.7133 Avicennia marina HOM05D001202 ORTHO05D001728 6.2e-11 70.1 50 58.0
CSS0035423 Camellia sinensis var. sinensis HOM05D001202 ORTHO05D001728 6.2e-11 70.1 50 60.0
Phvul.003G086600 Phaseolus vulgaris HOM05D001202 ORTHO05D001728 6.2e-11 70.1 50 56.0
CANSAT56G3013 Cannabis sativa HOM05D001202 ORTHO05D001728 8.0e-11 69.7 50 58.0
Gohir.A03G064250 Gossypium hirsutum HOM05D001202 ORTHO05D001728 1.1e-10 69.3 50 60.0
Gohir.A06G204200 Gossypium hirsutum HOM05D001202 ORTHO05D001728 1.1e-10 69.3 50 60.0
Gohir.D06G217300 Gossypium hirsutum HOM05D001202 ORTHO05D001728 1.1e-10 69.3 50 60.0
Gohir.D11G177400 Gossypium hirsutum HOM05D001202 ORTHO05D001728 1.1e-10 69.3 50 60.0
Gohir.D13G118800 Gossypium hirsutum HOM05D001202 ORTHO05D001728 1.1e-10 69.3 50 60.0
Gorai.010G248900 Gossypium raimondii HOM05D001202 ORTHO05D001728 1.1e-10 69.3 50 60.0
Medtr2g026695 Medicago truncatula HOM05D001202 ORTHO05D001728 1.1e-10 69.3 51 60.8
AL7G38680 Arabidopsis lyrata HOM05D001202 ORTHO05D001728 1.4e-10 68.9 50 56.0
CAN.G1156.15 Capsicum annuum HOM05D001202 ORTHO05D001728 1.8e-10 68.6 50 54.0
Ca_20997_v3 Cicer arietinum L. HOM05D001202 ORTHO05D001728 1.8e-10 68.6 53 58.5
Lj2A257T61 Lonicera japonica HOM05D001202 ORTHO05D001728 1.8e-10 68.6 50 60.0
Lj2C257T7 Lonicera japonica HOM05D001202 ORTHO05D001728 1.8e-10 68.6 50 60.0
unitig_749.g13687 Utricularia gibba HOM05D001202 ORTHO05D001728 1.8e-10 68.6 50 58.0
VMungo1215G0007 Vigna mungo HOM05D001202 ORTHO05D001728 1.8e-10 68.6 50 60.0
Duzib192G0203 Durio zibethinus HOM05D001202 ORTHO05D001728 2.3e-10 68.2 51 58.8
ATR0827G119 Amborella trichopoda HOM05D001202 ORTHO05D001728 3.1e-10 67.8 50 58.0
Psat4g002960 Pisum sativum HOM05D001202 ORTHO05D001728 3.1e-10 67.8 50 58.0
Sopen11g007450 Solanum pennellii HOM05D001202 ORTHO05D001728 3.1e-10 67.8 50 50.0
arahy.Tifrunner.gnm1.ann1.PNQ63J Arachis hypogaea HOM05D001202 ORTHO05D001728 4.0e-10 67.4 50 58.0
arahy.Tifrunner.gnm1.ann1.TSL6B6 Arachis hypogaea HOM05D001202 ORTHO05D001728 4.0e-10 67.4 50 58.0
CSS0022763 Camellia sinensis var. sinensis HOM05D001202 ORTHO05D001728 4.0e-10 67.4 50 56.0
CsaV3_6G048260 Cucumis sativus L. HOM05D001202 ORTHO05D001728 4.0e-10 67.4 50 56.0
QL05p067849 Quercus lobata HOM05D001202 ORTHO05D001728 4.0e-10 67.4 50 58.0
Solyc11g012710.2 Solanum lycopersicum HOM05D001202 ORTHO05D001728 4.0e-10 67.4 50 50.0
HanXRQChr16g0515791 Helianthus annuus HOM05D001202 ORTHO05D001728 5.2e-10 67.0 50 58.0
TWI63G0547 Tripterygium wilfordii HOM05D001202 ORTHO05D001728 5.2e-10 67.0 50 58.0
Oeu025399.1 Olea europaea HOM05D001202 ORTHO05D001728 6.8e-10 66.6 50 58.0
Migut.M01441 Erythranthe guttata HOM05D001202 ORTHO05D001728 8.9e-10 66.2 51 60.8
Rhsim13G0141200 Rhododendron simsii HOM05D001202 ORTHO05D001728 8.9e-10 66.2 50 52.0
Ah.09g233920 Amaranthus hybridus HOM05D001202 ORTHO05D001728 1.2e-09 65.9 50 54.0
ClCG01G021250 Citrullus lanatus HOM05D001202 ORTHO05D001728 1.2e-09 65.9 50 52.0
MELO3C008009.2 Cucumis melo HOM05D001202 ORTHO05D001728 1.2e-09 65.9 50 52.0
Nitab4.5_0001296g0070 Nicotiana tabacum HOM05D001202 ORTHO05D001728 1.5e-09 65.5 50 52.0
Sed0005876 Sechium edule HOM05D001202 ORTHO05D001728 2.6e-09 64.7 50 56.0
BcaB04g18378 Brassica carinata HOM05D001202 ORTHO05D001728 3.4e-09 64.3 50 56.0
Carub.0007s2517 Capsella rubella HOM05D001202 ORTHO05D001728 3.4e-09 64.3 51 54.9
CsaV3_1G015740 Cucumis sativus L. HOM05D001202 ORTHO05D001728 3.4e-09 64.3 50 54.0
Thhalv10025902m.g Eutrema salsugineum HOM05D001202 ORTHO05D001728 3.4e-09 64.3 51 54.9
Nitab4.5_0001701g0210 Nicotiana tabacum HOM05D001202 ORTHO05D001728 3.4e-09 64.3 52 57.7
BcaC06g33476 Brassica carinata HOM05D001202 ORTHO05D001728 4.4e-09 63.9 50 56.0
A03p49760 Brassica napus HOM05D001202 ORTHO05D001728 4.4e-09 63.9 50 56.0
BolC7t45304H Brassica oleracea HOM05D001202 ORTHO05D001728 4.4e-09 63.9 50 56.0
BraA03t14072Z Brassica rapa HOM05D001202 ORTHO05D001728 4.4e-09 63.9 50 56.0
AUR62021818 Chenopodium quinoa HOM05D001202 ORTHO05D001728 4.4e-09 63.9 50 54.0
ECA234G4594 Erigeron canadensis HOM05D001202 ORTHO05D001728 4.4e-09 63.9 50 56.0
HanXRQChr17g0558141 Helianthus annuus HOM05D001202 ORTHO05D001728 4.4e-09 63.9 50 58.0
MD15G1312500 Malus domestica HOM05D001202 ORTHO05D001728 4.4e-09 63.9 50 60.0
Peaxi162Scf00442g00711 Petunia axillaris HOM05D001202 ORTHO05D001728 4.4e-09 63.9 50 48.0
Sp7g14880 Schrenkiella parvula HOM05D001202 ORTHO05D001728 4.4e-09 63.9 51 54.9
EL10Ac8g20258 Beta vulgaris HOM05D001202 ORTHO05D001728 5.8e-09 63.5 50 56.0
A08p12270 Brassica napus HOM05D001202 ORTHO05D001728 5.8e-09 63.5 50 56.0
BraA08t33231Z Brassica rapa HOM05D001202 ORTHO05D001728 5.8e-09 63.5 50 56.0
Sc05g0009830 Simmondsia chinensis HOM05D001202 ORTHO05D001728 5.8e-09 63.5 50 60.0
THA.LOC104814479 Tarenaya hassleriana HOM05D001202 ORTHO05D001728 5.8e-09 63.5 51 54.9
CARHR222730 Cardamine hirsuta HOM05D001202 ORTHO05D001728 7.5e-09 63.2 51 54.9
MELO3C025522.2 Cucumis melo HOM05D001202 ORTHO05D001728 7.5e-09 63.2 50 52.0
BcaNung06745 Brassica carinata HOM05D001202 ORTHO05D001728 9.8e-09 62.8 50 54.0
Aa31LG2G12420 Aethionema arabicum HOM05D001202 ORTHO05D001728 1.3e-08 62.4 51 54.9
BcaC07g37978 Brassica carinata HOM05D001202 ORTHO05D001728 1.3e-08 62.4 50 54.0
C07p47820 Brassica napus HOM05D001202 ORTHO05D001728 1.3e-08 62.4 50 54.0
BolC8t48360H Brassica oleracea HOM05D001202 ORTHO05D001728 1.7e-08 62.0 50 56.0
AUR62012841 Chenopodium quinoa HOM05D001202 ORTHO05D001728 1.7e-08 62.0 50 52.0
PGSC0003DMG400017398 Solanum tuberosum HOM05D001202 ORTHO05D001728 1.7e-08 62.0 52 55.8
Ciclev10016199m.g Citrus clementina HOM05D001202 ORTHO05D001728 2.2e-08 61.6 50 56.0
Solyc07g045460.3 Solanum lycopersicum HOM05D001202 ORTHO05D001728 2.2e-08 61.6 52 55.8
Sopen07g024000 Solanum pennellii HOM05D001202 ORTHO05D001728 2.2e-08 61.6 52 55.8
ClCG01G010780 Citrullus lanatus HOM05D001202 ORTHO05D001728 2.9e-08 61.2 50 54.0
THA.LOC104812784 Tarenaya hassleriana HOM05D001202 ORTHO05D001728 2.9e-08 61.2 52 55.8
Sed0026569 Sechium edule HOM05D001202 ORTHO05D001728 3.7e-08 60.8 50 50.0
Sed0009781 Sechium edule HOM05D001202 ORTHO05D001728 4.9e-08 60.5 50 52.0
SGA_v2.0_scaffold186G40119 Striga asiatica HOM05D001202 ORTHO05D001728 4.9e-08 60.5 50 54.0
Peaxi162Scf00576g00121 Petunia axillaris HOM05D001202 ORTHO05D001728 6.4e-08 60.1 50 50.0
Dinv26605 Davidia involucrata HOM05D001202 ORTHO05D001728 8.3e-08 59.7 51 54.9
MSTRG.13108 Avicennia marina HOM05D001202 ORTHO05D001728 1.1e-07 59.3 50 52.0
Dinv21297 Davidia involucrata HOM05D001202 ORTHO05D001728 1.4e-07 58.9 52 55.8
Nitab4.5_0001867g0120 Nicotiana tabacum HOM05D001202 ORTHO05D001728 1.9e-07 58.5 52 53.8
PSO675G1580 Papaver somniferum HOM05D001202 ORTHO05D001728 1.9e-07 58.5 51 54.9
Solyc05g054220.3 Solanum lycopersicum HOM05D001202 ORTHO05D001728 1.9e-07 58.5 50 52.0
Sopen05g032710 Solanum pennellii HOM05D001202 ORTHO05D001728 1.9e-07 58.5 50 52.0
PGSC0003DMG400008440 Solanum tuberosum HOM05D001202 ORTHO05D001728 1.9e-07 58.5 50 52.0
Peaxi162Scf00802g00238 Petunia axillaris HOM05D001202 ORTHO05D001728 5.4e-07 57.0 52 53.8
CAN.G177.9 Capsicum annuum HOM05D001202 ORTHO05D001728 9.2e-07 56.2 52 51.9
Nitab4.5_0001904g0060 Nicotiana tabacum HOM05D001202 ORTHO05D001728 1.2e-06 55.8 50 52.0
SEGI_21925 Sequoiadendron giganteum HOM05D001202 ORTHO05D001728 4.6e-06 53.9 50 46.0
TAR623G0112 Trochodendron aralioides HOM05D001202 ORTHO05D001728 4.6e-06 53.9 50 46.0
TPR.G5985 Trifolium pratense HOM05D001202 ORTHO05D001728 7.8e-06 53.1 52 48.1


User provided reference genes

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