Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 2.1e-174 615.5 304 100.0
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 1.6e-116 423.3 305 68.5
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 8.5e-115 417.5 301 69.4
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 7.5e-111 404.4 306 66.3
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.6e-105 386.7 306 66.0
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.8e-104 383.3 305 63.6
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 1.8e-104 383.3 305 63.6
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 6.8e-104 381.3 309 66.7
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 4.4e-103 378.6 321 63.2
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 4.4e-103 378.6 321 62.6
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 1.3e-102 377.1 333 60.4
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.3e-102 377.1 303 62.4
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 1.7e-102 376.7 321 62.9
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 2.2e-102 376.3 319 63.6
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 2.8e-102 375.9 306 66.0
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 3.7e-102 375.6 333 60.1
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 1.8e-101 373.2 301 62.5
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 1.8e-101 373.2 307 64.2
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 2.4e-101 372.9 301 61.8
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 9.2e-101 370.9 306 63.1
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 1.6e-100 370.2 305 62.3
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 5.0e-99 365.2 308 61.7
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 2.5e-98 362.8 302 61.9
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 7.3e-98 361.3 306 62.4
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 1.2e-97 360.5 311 60.5
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 2.1e-97 359.8 311 62.1
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 2.1e-97 359.8 309 61.2
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.1e-97 358.2 306 64.4
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 6.1e-97 358.2 318 61.6
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 8.0e-97 357.8 308 64.0
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 1.4e-96 357.1 301 60.8
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.4e-96 357.1 318 61.3
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 1.8e-96 356.7 305 63.6
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 2.3e-96 356.3 307 60.6
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 6.8e-96 354.8 312 60.3
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 3.4e-95 352.4 306 59.8
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 4.9e-94 348.6 302 60.9
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 8.3e-94 347.8 305 63.3
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.9e-93 346.7 308 62.0
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 2.4e-93 346.3 307 59.6
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 2.7e-92 342.8 302 57.9
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 1.0e-91 340.9 309 59.5
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 1.3e-91 340.5 324 57.7
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 1.7e-91 340.1 304 58.6
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 2.3e-91 339.7 307 61.2
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 3.0e-91 339.3 301 58.1
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 8.6e-91 337.8 308 58.8
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 1.5e-90 337.0 304 57.2
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.9e-90 336.7 305 61.6
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 2.5e-90 336.3 308 58.8
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 9.5e-90 334.3 301 58.1
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 2.1e-89 333.2 310 60.0
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 3.6e-89 332.4 305 56.7
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 4.7e-89 332.0 299 58.2
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 1.1e-88 330.9 315 58.7
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 2.3e-88 329.7 308 56.5
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 4.0e-88 328.9 307 57.7
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 2.0e-87 326.6 309 57.3
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 2.6e-87 326.2 299 57.9
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 3.4e-87 325.9 305 56.4
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 3.4e-87 325.9 299 59.2
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 9.8e-87 324.3 309 56.3
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 4.9e-86 322.0 309 57.6
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 4.9e-86 322.0 310 57.1
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 4.9e-86 322.0 311 57.6
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 8.3e-86 321.2 309 56.3
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.1e-85 320.9 309 56.3
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.1e-85 320.9 309 58.3
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 1.9e-85 320.1 254 64.2
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 5.4e-85 318.5 307 59.6
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 7.8e-84 314.7 312 55.8
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 1.0e-83 314.3 305 53.4
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 1.7e-83 313.5 311 56.3
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 3.0e-83 312.8 307 54.7
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 3.9e-83 312.4 311 55.0
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 5.1e-83 312.0 316 54.4
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 6.6e-83 311.6 309 56.6
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 8.6e-83 311.2 297 59.6
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 4.3e-82 308.9 311 55.9
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 7.3e-82 308.1 300 55.3
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 3.6e-81 305.8 285 58.2
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 1.2e-79 300.8 301 54.2
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.5e-79 300.4 312 54.5
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 5.8e-79 298.5 309 55.7
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 2.3e-75 286.6 304 55.3
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 7.3e-74 281.6 252 61.5
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 1.1e-72 277.7 300 53.0
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 2.0e-71 273.5 303 52.1
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 3.4e-71 272.7 308 52.3
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 7.6e-71 271.6 308 51.6
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 4.9e-70 268.9 306 52.9
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 8.4e-70 268.1 318 51.9
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 3.2e-69 266.2 314 53.5
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.2e-68 264.2 337 50.4
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 1.7e-67 260.4 315 52.7
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 2.3e-67 260.0 315 52.7
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 3.0e-67 259.6 316 52.8
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 3.9e-67 259.2 315 52.7
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 3.9e-67 259.2 394 41.9
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 8.7e-67 258.1 263 55.9
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.1e-66 257.7 348 49.7
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 1.5e-66 257.3 307 49.5
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 1.9e-66 256.9 315 52.4
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 1.9e-66 256.9 315 52.4
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 1.3e-65 254.2 314 51.0
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.3e-65 254.2 342 49.4
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 1.6e-65 253.8 286 51.4
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 1.1e-64 251.1 306 48.7
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 3.4e-63 246.1 302 47.4
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 9.9e-63 244.6 337 47.5
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 1.3e-62 244.2 234 56.8
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 4.0e-56 222.6 307 45.6
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 3.2e-45 186.4 211 51.7
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 5.5e-45 185.7 315 43.8
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 1.0e-43 181.4 301 41.5
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 3.0e-43 179.9 363 39.4
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.0e-43 179.9 144 61.8
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 1.5e-42 177.6 302 43.4
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 3.3e-42 176.4 293 42.3
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 4.1e-40 169.5 230 48.3
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 5.8e-39 165.6 197 51.8
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 2.9e-38 163.3 159 54.1
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 5.0e-38 162.5 253 46.2
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 4.2e-37 159.5 158 53.8
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 1.0e-35 154.8 147 58.5
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 6.7e-35 152.1 116 67.2
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 1.1e-34 151.4 157 53.5
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.5e-34 151.0 132 62.9
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 7.4e-34 148.7 161 52.8
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 9.7e-34 148.3 161 52.8
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 6.3e-33 145.6 115 62.6
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 1.1e-32 144.8 257 40.1
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 3.1e-32 143.3 181 48.6
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 3.4e-31 139.8 290 42.8
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 3.4e-31 139.8 192 49.0
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 1.0e-30 138.3 115 59.1
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 1.0e-30 138.3 289 38.4
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 1.0e-30 138.3 290 42.4
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.0e-30 138.3 290 42.4
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.1e-29 134.8 158 50.6
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 7.2e-29 132.1 169 45.6
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 1.2e-28 131.3 103 64.1
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 2.7e-28 130.2 132 54.5
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 1.0e-27 128.3 147 51.7
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 2.0e-26 124.0 257 37.0
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 9.4e-21 105.1 131 49.6
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 6.7e-19 99.0 273 31.5
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 2.0e-18 97.4 172 40.1
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 1.2e-15 88.2 77 61.0
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.6e-15 87.8 133 46.6
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 6.5e-14 82.4 102 47.1
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.9e-13 80.9 71 59.2
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 2.0e-10 70.9 55 58.2
TAR636G1337 Trochodendron aralioides HOM05D007866 ORTHO05D003871 8.2e-09 65.5 37 78.4
DCAR_024051 Daucus carota HOM05D004212 ORTHO05D005128 1.1e-08 65.1 64 54.7
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 1.8e-08 64.3 56 53.6
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 3.5e-07 60.1 57 57.9
FAN07G2658 Fragaria x ananassa HOM05D004212 ORTHO05D005128 8.5e-06 55.5 38 73.7


User provided reference genes

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