Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1602 Trochodendron aralioides HOM05D002412 ORTHO05D002516 7.0e-59 230.3 110 100.0
TAR376G0005 Trochodendron aralioides HOM05D002412 ORTHO05D002516 4.7e-39 164.5 110 71.8
Nn5g30629 Nelumbo nucifera HOM05D002412 ORTHO05D002516 2.3e-30 135.6 106 64.2
TAR628G0919 Trochodendron aralioides HOM05D002412 ORTHO05D002516 4.0e-30 134.8 110 66.4
TAR381G0181 Trochodendron aralioides HOM05D002412 ORTHO05D002516 4.4e-29 131.3 107 63.6
Aqoxy6G02560 Aquilegia oxysepala HOM05D002412 ORTHO05D002516 3.0e-25 118.6 107 57.9
Nn6g34504 Nelumbo nucifera HOM05D002412 ORTHO05D002516 1.5e-24 116.3 111 57.7
Cfa004671 Carpinus fangiana HOM05D002412 ORTHO05D002516 6.4e-20 100.9 109 49.5
GSVIVG01037808001 Vitis vinifera HOM05D002412 ORTHO05D002516 6.4e-20 100.9 111 51.4
QL11p029982 Quercus lobata HOM05D002412 ORTHO05D002516 1.2e-18 96.7 120 47.5
Haze_10271 Corylus avellana HOM05D002412 ORTHO05D002516 3.5e-18 95.1 115 46.1
Dinv42242 Davidia involucrata HOM05D002412 ORTHO05D002516 4.6e-18 94.7 108 53.7
PSO170G3219 Papaver somniferum HOM05D002412 ORTHO05D002516 5.6e-16 87.8 105 52.4
PSO017G0848 Papaver somniferum HOM05D002412 ORTHO05D002516 7.3e-16 87.4 100 54.0
Thecc.02G118800 Theobroma cacao HOM05D002412 ORTHO05D002516 3.6e-15 85.1 109 48.6
CSS0003834 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 6.2e-15 84.3 103 49.5
Thecc.08G086800 Theobroma cacao HOM05D002412 ORTHO05D002516 1.8e-14 82.8 104 51.0
Ciclev10029343m.g Citrus clementina HOM05D002412 ORTHO05D002516 4.0e-14 81.6 106 45.3
Prupe.8G147000 Prunus persica HOM05D002412 ORTHO05D002516 1.2e-13 80.1 122 44.3
MELO3C018019.2 Cucumis melo HOM05D002412 ORTHO05D002516 5.8e-13 77.8 117 43.6
Dinv15818 Davidia involucrata HOM05D002412 ORTHO05D002516 7.6e-13 77.4 102 45.1
Lalb_Chr21g0308011 Lupinus albus HOM05D002412 ORTHO05D002516 7.6e-13 77.4 115 43.5
CsaV3_4G000130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 9.9e-13 77.0 112 42.9
Dinv44944 Davidia involucrata HOM05D002412 ORTHO05D002516 9.9e-13 77.0 105 43.8
Duzib052G0953 Durio zibethinus HOM05D002412 ORTHO05D002516 1.3e-12 76.6 112 42.9
Duzib093G1945 Durio zibethinus HOM05D002412 ORTHO05D002516 2.2e-12 75.9 108 47.2
Gohir.A12G019300 Gossypium hirsutum HOM05D002412 ORTHO05D002516 2.9e-12 75.5 113 44.2
Gohir.D12G019500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 2.9e-12 75.5 113 44.2
Gorai.008G019800 Gossypium raimondii HOM05D002412 ORTHO05D002516 2.9e-12 75.5 113 44.2
Glyma.10G256100 Glycine max HOM05D002412 ORTHO05D002516 3.8e-12 75.1 109 45.0
ClCG10G010090 Citrullus lanatus HOM05D002412 ORTHO05D002516 4.9e-12 74.7 119 44.5
Actinidia10209 Actinidia chinensis HOM05D002412 ORTHO05D002516 6.4e-12 74.3 101 46.5
COL.COLO4_28483 Corchorus olitorius HOM05D002412 ORTHO05D002516 6.4e-12 74.3 110 45.5
Phvul.002G051300 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 6.4e-12 74.3 111 42.3
VMungo1215G2231 Vigna mungo HOM05D002412 ORTHO05D002516 6.4e-12 74.3 106 44.3
Glyma.11G002100 Glycine max HOM05D002412 ORTHO05D002516 8.4e-12 73.9 109 43.1
Actinidia19303 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.4e-11 73.2 97 45.4
CSS0002290 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 1.9e-11 72.8 105 46.7
CiPaw.06G164900 Carya illinoinensis HOM05D002412 ORTHO05D002516 1.9e-11 72.8 118 38.1
vmacro19537 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 2.4e-11 72.4 103 46.6
Glyma.20G135500 Glycine max HOM05D002412 ORTHO05D002516 3.2e-11 72.0 114 45.6
Peaxi162Scf00081g00269 Petunia axillaris HOM05D002412 ORTHO05D002516 5.4e-11 71.2 109 45.0
Glyma.01G242100 Glycine max HOM05D002412 ORTHO05D002516 7.1e-11 70.9 109 42.2
Lalb_Chr06g0165021 Lupinus albus HOM05D002412 ORTHO05D002516 7.1e-11 70.9 114 42.1
RhsimUnG0041400 Rhododendron simsii HOM05D002412 ORTHO05D002516 7.1e-11 70.9 105 44.8
RhsimUnG0123400 Rhododendron simsii HOM05D002412 ORTHO05D002516 7.1e-11 70.9 105 44.8
MD08G1080400 Malus domestica HOM05D002412 ORTHO05D002516 9.3e-11 70.5 102 48.0
Prupe.1G421400 Prunus persica HOM05D002412 ORTHO05D002516 9.3e-11 70.5 87 49.4
Duzib041G0516 Durio zibethinus HOM05D002412 ORTHO05D002516 1.2e-10 70.1 103 45.6
Gorai.009G220800 Gossypium raimondii HOM05D002412 ORTHO05D002516 1.6e-10 69.7 107 42.1
PGSC0003DMG400010615 Solanum tuberosum HOM05D002412 ORTHO05D002516 1.6e-10 69.7 103 43.7
Atru.chr13.848 Acer truncatum HOM05D002412 ORTHO05D002516 2.1e-10 69.3 96 46.9
Gohir.D05G214100 Gossypium hirsutum HOM05D002412 ORTHO05D002516 7.8e-10 67.4 107 42.1
Cc00_g17020 Coffea canephora HOM05D002412 ORTHO05D002516 1.0e-09 67.0 114 41.2
Phvul.007G046700 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.0e-09 67.0 104 41.3
CSS0009619 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 1.7e-09 66.2 80 47.5
Sed0010289 Sechium edule HOM05D002412 ORTHO05D002516 1.7e-09 66.2 121 43.0
Nitab4.5_0000497g0080 Nicotiana tabacum HOM05D002412 ORTHO05D002516 2.3e-09 65.9 102 42.2
CiPaw.07G173700 Carya illinoinensis HOM05D002412 ORTHO05D002516 3.0e-09 65.5 83 43.4
Eucgr.I01046 Eucalyptus grandis HOM05D002412 ORTHO05D002516 3.0e-09 65.5 78 51.3
Hma1.2p1_1059F.1_g253110 Hydrangea macrophylla HOM05D002412 ORTHO05D002516 3.0e-09 65.5 102 43.1
Gohir.A05G210800 Gossypium hirsutum HOM05D002412 ORTHO05D002516 5.1e-09 64.7 107 41.1
Rhsim05G0091500 Rhododendron simsii HOM05D002412 ORTHO05D002516 5.1e-09 64.7 105 44.8
CiPaw.08G050800 Carya illinoinensis HOM05D002412 ORTHO05D002516 6.6e-09 64.3 98 40.8
Haze_22419 Corylus avellana HOM05D002412 ORTHO05D002516 6.6e-09 64.3 102 44.1
Manes.18G047500 Manihot esculenta HOM05D002412 ORTHO05D002516 6.6e-09 64.3 77 50.6
TWI59G0380 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 6.6e-09 64.3 119 39.5
Rhsim06G0063100 Rhododendron simsii HOM05D002412 ORTHO05D002516 8.7e-09 63.9 89 43.8
Actinidia04390 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.1e-08 63.5 76 46.1
Lalb_Chr02g0144931 Lupinus albus HOM05D002412 ORTHO05D002516 1.1e-08 63.5 113 38.1
Potri.001G292100 Populus trichocarpa HOM05D002412 ORTHO05D002516 1.1e-08 63.5 101 41.6
VMungo0720G0862 Vigna mungo HOM05D002412 ORTHO05D002516 1.1e-08 63.5 104 40.4
MSTRG.24380 Avicennia marina HOM05D002412 ORTHO05D002516 1.5e-08 63.2 92 46.7
Potri.009G086600 Populus trichocarpa HOM05D002412 ORTHO05D002516 1.9e-08 62.8 127 38.6
TAR625G0272 Trochodendron aralioides HOM05D002412 ORTHO05D002516 1.9e-08 62.8 57 57.9
vmacro01953 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 1.9e-08 62.8 108 40.7
VMungo0647G1017 Vigna mungo HOM05D002412 ORTHO05D002516 1.9e-08 62.8 105 41.9
C07p59890 Brassica napus HOM05D002412 ORTHO05D002516 2.5e-08 62.4 78 48.7
CANSAT25G2021 Cannabis sativa HOM05D002412 ORTHO05D002516 3.3e-08 62.0 97 42.3
Lj5g0012685 Lotus japonicus HOM05D002412 ORTHO05D002516 3.3e-08 62.0 109 38.5
Medtr5g005230 Medicago truncatula HOM05D002412 ORTHO05D002516 3.3e-08 62.0 102 40.2
QL12p038263 Quercus lobata HOM05D002412 ORTHO05D002516 3.3e-08 62.0 99 41.4
QL93p0154_0003 Quercus lobata HOM05D002412 ORTHO05D002516 3.3e-08 62.0 99 41.4
Actinidia00360 Actinidia chinensis HOM05D002412 ORTHO05D002516 4.3e-08 61.6 105 38.1
Ciclev10002703m.g Citrus clementina HOM05D002412 ORTHO05D002516 4.3e-08 61.6 108 44.4
Sabra09G0066300 Salix brachista HOM05D002412 ORTHO05D002516 4.3e-08 61.6 96 38.5
Sc15g0005620 Simmondsia chinensis HOM05D002412 ORTHO05D002516 4.3e-08 61.6 78 44.9
Sed0022600 Sechium edule HOM05D002412 ORTHO05D002516 5.6e-08 61.2 96 45.8
HanXRQChr03g0065031 Helianthus annuus HOM05D002412 ORTHO05D002516 7.3e-08 60.8 99 42.4
Peaxi162Scf00003g00288 Petunia axillaris HOM05D002412 ORTHO05D002516 9.6e-08 60.5 108 35.2
TWI12G0333 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 1.3e-07 60.1 106 42.5
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 1.6e-07 59.7 80 47.5
A03p62330 Brassica napus HOM05D002412 ORTHO05D002516 1.6e-07 59.7 104 43.3
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 1.6e-07 59.7 104 43.3
Lj9A332T16 Lonicera japonica HOM05D002412 ORTHO05D002516 1.6e-07 59.7 109 33.9
BolC7t46433H Brassica oleracea HOM05D002412 ORTHO05D002516 2.1e-07 59.3 78 48.7
Cc10_g05040 Coffea canephora HOM05D002412 ORTHO05D002516 2.1e-07 59.3 107 39.3
CsaV3_4G035130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 2.1e-07 59.3 106 40.6
Lj9A329T24 Lonicera japonica HOM05D002412 ORTHO05D002516 2.1e-07 59.3 109 33.9
Oeu037285.1 Olea europaea HOM05D002412 ORTHO05D002516 2.1e-07 59.3 75 44.0
Psat6g214680 Pisum sativum HOM05D002412 ORTHO05D002516 2.1e-07 59.3 114 35.1
Sed0020406 Sechium edule HOM05D002412 ORTHO05D002516 2.1e-07 59.3 109 40.4
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 2.8e-07 58.9 78 48.7
Solyc04g077690.3 Solanum lycopersicum HOM05D002412 ORTHO05D002516 2.8e-07 58.9 105 39.0
BcaC09g52190 Brassica carinata HOM05D002412 ORTHO05D002516 3.6e-07 58.5 76 47.4
C01p04900 Brassica napus HOM05D002412 ORTHO05D002516 3.6e-07 58.5 76 47.4
BolC1t00474H Brassica oleracea HOM05D002412 ORTHO05D002516 3.6e-07 58.5 76 47.4
FAN20G2155 Fragaria x ananassa HOM05D002412 ORTHO05D002516 3.6e-07 58.5 103 45.6
Gohir.A02G080700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 3.6e-07 58.5 110 42.7
Nitab4.5_0003725g0030 Nicotiana tabacum HOM05D002412 ORTHO05D002516 3.6e-07 58.5 80 47.5
PSO541G5000 Papaver somniferum HOM05D002412 ORTHO05D002516 3.6e-07 58.5 58 56.9
Psat4g227320 Pisum sativum HOM05D002412 ORTHO05D002516 3.6e-07 58.5 106 36.8
Sabra16G0182100 Salix brachista HOM05D002412 ORTHO05D002516 3.6e-07 58.5 86 39.5
Ca_11030_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 4.8e-07 58.2 109 35.8
Oeu036975.1 Olea europaea HOM05D002412 ORTHO05D002516 4.8e-07 58.2 80 42.5
Psat6g017720 Pisum sativum HOM05D002412 ORTHO05D002516 4.8e-07 58.2 100 38.0
Lalb_Chr11g0062941 Lupinus albus HOM05D002412 ORTHO05D002516 6.2e-07 57.8 72 51.4
MD15G1067500 Malus domestica HOM05D002412 ORTHO05D002516 6.2e-07 57.8 107 42.1
Phvul.001G028800 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 6.2e-07 57.8 85 45.9
Sopen01g049190 Solanum pennellii HOM05D002412 ORTHO05D002516 6.2e-07 57.8 79 44.3
TWI12G0423 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 6.2e-07 57.8 80 43.8
CSS0009753 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 8.1e-07 57.4 83 42.2
Gohir.D02G088500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 8.1e-07 57.4 110 42.7
Nitab4.5_0001458g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 8.1e-07 57.4 109 39.4
Ca_24361_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 1.1e-06 57.0 106 35.8
MELO3C016826.2 Cucumis melo HOM05D002412 ORTHO05D002516 1.1e-06 57.0 104 43.3
DCAR_001741 Daucus carota HOM05D002412 ORTHO05D002516 1.1e-06 57.0 95 40.0
Glyma.14G089039 Glycine max HOM05D002412 ORTHO05D002516 1.1e-06 57.0 105 42.9
TPR.G8322 Trifolium pratense HOM05D002412 ORTHO05D002516 1.1e-06 57.0 108 38.9
Gorai.005G099200 Gossypium raimondii HOM05D002412 ORTHO05D002516 1.4e-06 56.6 110 42.7
Psat0ss7070g0040 Pisum sativum HOM05D002412 ORTHO05D002516 1.4e-06 56.6 100 40.0
ATR0739G138 Amborella trichopoda HOM05D002412 ORTHO05D002516 1.8e-06 56.2 100 40.0
FvH4_2g32900 Fragaria vesca HOM05D002412 ORTHO05D002516 1.8e-06 56.2 97 45.4
FAN15G1065 Fragaria x ananassa HOM05D002412 ORTHO05D002516 1.8e-06 56.2 100 44.0
Sabra14G0009000 Salix brachista HOM05D002412 ORTHO05D002516 1.8e-06 56.2 99 35.4
Peaxi162Scf00160g00517 Petunia axillaris HOM05D002412 ORTHO05D002516 2.4e-06 55.8 82 43.9
TWI56G0446 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 2.4e-06 55.8 78 43.6
A01p04520 Brassica napus HOM05D002412 ORTHO05D002516 3.1e-06 55.5 76 46.1
Glyma.04G046600 Glycine max HOM05D002412 ORTHO05D002516 3.1e-06 55.5 73 45.2
Potri.014G015000 Populus trichocarpa HOM05D002412 ORTHO05D002516 3.1e-06 55.5 105 39.0
Sopen04g031330 Solanum pennellii HOM05D002412 ORTHO05D002516 3.1e-06 55.5 108 36.1
TPR.G21149 Trifolium pratense HOM05D002412 ORTHO05D002516 3.1e-06 55.5 107 34.6
Medtr1g106080 Medicago truncatula HOM05D002412 ORTHO05D002516 4.0e-06 55.1 108 38.9
Lj1g0009349 Lotus japonicus HOM05D002412 ORTHO05D002516 5.3e-06 54.7 110 36.4
Lj5g0023078 Lotus japonicus HOM05D002412 ORTHO05D002516 5.3e-06 54.7 102 37.3
Actinidia34355 Actinidia chinensis HOM05D002412 ORTHO05D002516 6.9e-06 54.3 103 37.9
BraA01t00437Z Brassica rapa HOM05D002412 ORTHO05D002516 6.9e-06 54.3 76 46.1
THA.LOC104807210 Tarenaya hassleriana HOM05D002412 ORTHO05D002516 6.9e-06 54.3 110 37.3
MSTRG.22217 Avicennia marina HOM05D002412 ORTHO05D002516 9.0e-06 53.9 104 38.5
Nitab4.5_0007781g0010 Nicotiana tabacum HOM05D002412 ORTHO05D002516 9.0e-06 53.9 111 33.3
Oeu053627.1 Olea europaea HOM05D002412 ORTHO05D002516 9.0e-06 53.9 74 45.9
PSO675G0250 Papaver somniferum HOM05D002412 ORTHO05D002516 9.0e-06 53.9 55 54.5


User provided reference genes

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