Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 8.9e-156 553.5 270 100.0
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 4.0e-116 421.8 269 74.7
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 2.6e-115 419.1 271 76.4
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 3.4e-115 418.7 269 75.1
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 7.6e-115 417.5 270 73.7
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 4.2e-113 411.8 270 74.8
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.2e-112 410.2 269 75.1
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 6.0e-112 407.9 269 73.2
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 3.9e-111 405.2 269 75.1
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 3.3e-110 402.1 296 68.9
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 5.6e-110 401.4 271 72.0
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 5.6e-110 401.4 268 72.4
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 1.6e-109 399.8 273 71.8
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 1.4e-108 396.7 270 75.2
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 2.4e-108 396.0 283 70.0
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 6.9e-108 394.4 270 73.0
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 3.4e-107 392.1 234 79.1
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 5.8e-107 391.3 260 73.1
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 8.4e-106 387.5 230 78.7
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 7.1e-105 384.4 270 70.4
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 1.6e-104 383.3 272 71.3
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 1.6e-104 383.3 271 69.4
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 2.1e-104 382.9 263 71.5
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.0e-103 380.6 261 70.9
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 1.0e-103 380.6 265 70.9
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 1.3e-103 380.2 271 68.6
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 5.1e-103 378.3 249 71.1
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 8.7e-103 377.5 266 70.3
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 8.7e-103 377.5 269 68.8
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 1.1e-102 377.1 269 72.5
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.5e-102 376.7 269 71.0
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 1.9e-102 376.3 269 69.5
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.9e-102 376.3 249 70.7
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 2.5e-102 375.9 295 64.7
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 3.3e-102 375.6 266 68.0
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 3.3e-102 375.6 274 68.6
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 3.3e-102 375.6 267 69.7
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 4.3e-102 375.2 233 75.5
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 9.6e-102 374.0 257 70.0
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 1.6e-101 373.2 245 73.5
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 3.7e-101 372.1 231 76.2
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 6.2e-101 371.3 244 72.5
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 6.2e-101 371.3 266 67.7
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.1e-100 369.0 299 63.5
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 3.1e-100 369.0 259 70.7
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 4.0e-100 368.6 263 68.1
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.3e-100 368.2 261 70.5
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 6.9e-100 367.9 264 67.8
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 1.2e-99 367.1 243 70.4
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 2.6e-99 365.9 263 68.4
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 2.6e-99 365.9 244 72.1
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.4e-99 365.5 289 64.0
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 4.5e-99 365.2 240 71.2
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 4.5e-99 365.2 244 72.1
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 4.5e-99 365.2 244 71.3
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 7.6e-99 364.4 265 66.4
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 1.0e-98 364.0 262 69.1
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 1.7e-98 363.2 277 66.4
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 1.7e-98 363.2 269 65.1
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 1.7e-98 363.2 263 67.7
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 1.7e-98 363.2 251 71.3
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 2.2e-98 362.8 243 71.6
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 2.9e-98 362.5 268 69.4
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 3.8e-98 362.1 244 73.0
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 3.8e-98 362.1 249 69.9
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 4.9e-98 361.7 245 71.4
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 4.9e-98 361.7 263 69.6
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 6.5e-98 361.3 244 71.7
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 6.5e-98 361.3 263 67.3
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 1.9e-97 359.8 244 71.7
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 1.9e-97 359.8 248 69.8
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 1.9e-97 359.8 248 69.8
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 2.5e-97 359.4 260 70.0
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 2.5e-97 359.4 269 66.5
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 4.2e-97 358.6 228 73.7
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 5.5e-97 358.2 261 67.4
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 7.1e-97 357.8 271 66.4
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 7.1e-97 357.8 260 70.0
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 7.1e-97 357.8 240 70.8
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 9.3e-97 357.5 243 68.7
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.2e-96 357.1 259 69.9
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 1.6e-96 356.7 248 69.8
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 1.6e-96 356.7 248 69.8
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 1.6e-96 356.7 243 72.0
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 1.6e-96 356.7 257 68.1
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 2.7e-96 355.9 268 66.0
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 3.5e-96 355.5 248 69.4
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 3.5e-96 355.5 237 72.6
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 1.3e-95 353.6 248 69.8
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 3.9e-95 352.1 230 72.6
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.9e-95 352.1 263 66.5
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 5.1e-95 351.7 230 72.2
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 5.1e-95 351.7 264 64.8
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 8.7e-95 350.9 245 68.2
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 8.7e-95 350.9 263 66.5
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 5.7e-94 348.2 271 64.2
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 7.4e-94 347.8 239 70.3
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.6e-93 346.7 246 67.1
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 2.1e-93 346.3 268 62.3
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.1e-93 346.3 268 62.3
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 8.2e-93 344.4 266 63.9
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 3.1e-92 342.4 294 60.9
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 3.1e-92 342.4 309 59.5
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 4.5e-91 338.6 244 68.0
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.0e-90 337.4 245 66.9
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 5.0e-90 335.1 288 60.8
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 6.5e-90 334.7 245 66.1
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 3.3e-86 322.4 274 60.6
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 9.7e-86 320.9 259 61.4
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.8e-85 319.3 286 61.2
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 4.8e-85 318.5 228 65.4
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.0e-83 313.2 236 66.5
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 2.2e-82 309.7 229 65.9
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 2.2e-82 309.7 252 63.5
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.8e-82 308.9 273 58.6
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.0e-82 308.5 369 47.7
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.5e-81 306.2 251 59.8
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 1.5e-78 297.0 271 57.6
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 1.5e-78 297.0 299 52.5
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 4.3e-78 295.4 254 57.5
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 5.7e-78 295.0 253 59.3
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 2.8e-77 292.7 197 72.1
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.0e-75 286.6 228 61.4
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.9e-73 280.0 228 60.1
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 7.9e-72 274.6 192 70.8
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.9e-66 256.1 266 51.1
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 8.5e-66 254.6 174 71.3
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 4.2e-65 252.3 173 70.5
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.5e-65 251.9 233 57.5
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 4.7e-64 248.8 177 71.2
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 6.1e-64 248.4 223 57.8
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 1.0e-63 247.7 237 52.7
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.4e-63 247.3 160 73.1
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 7.4e-62 241.5 279 48.7
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 1.7e-61 240.4 234 51.3
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 1.5e-57 227.3 195 54.4
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 8.0e-56 221.5 222 52.7
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 6.8e-55 218.4 242 52.5
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 4.1e-52 209.1 273 41.4
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 9.1e-52 208.0 243 46.9
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.3e-47 193.4 169 60.4
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 1.1e-41 174.5 130 63.1
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 2.1e-40 170.2 134 64.9
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 2.6e-30 136.7 215 34.9
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 4.4e-30 136.0 79 78.5
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 9.8e-30 134.8 95 68.4
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 6.4e-29 132.1 291 33.7
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 1.6e-27 127.5 94 67.0
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 2.8e-24 116.7 81 69.1
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 2.9e-21 106.7 54 85.2
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 4.1e-20 102.8 63 71.4
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 2.5e-17 93.6 217 27.6
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 3.3e-17 93.2 58 72.4
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.7e-16 89.4 52 80.8
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 2.9e-13 80.1 135 38.5
SEGI_35437 Sequoiadendron giganteum HOM05D004534 ORTHO05D005413 1.9e-09 67.4 43 69.8
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 2.5e-09 67.0 35 74.3


User provided reference genes

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