Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G3257 Trochodendron aralioides HOM05D000445 ORTHO05D000314 4.8e-54 214.2 102 100.0
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 7.7e-52 206.8 99 98.0
Nn3g16153 Nelumbo nucifera HOM05D000445 ORTHO05D000314 7.7e-52 206.8 99 98.0
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 7.7e-52 206.8 99 98.0
Sed0009579 Sechium edule HOM05D000445 ORTHO05D000314 5.0e-51 204.1 99 97.0
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 4.2e-50 201.1 101 93.1
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 7.2e-50 200.3 99 94.9
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 1.2e-49 199.5 99 94.9
Aqoxy3G01862 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 1.2e-49 199.5 99 94.9
AL2G20470 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 3.6e-49 198.0 99 92.9
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 3.6e-49 198.0 99 92.9
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 6.1e-49 197.2 99 93.9
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 6.1e-49 197.2 99 93.9
Thhalv10001808m.g Eutrema salsugineum HOM05D000445 ORTHO05D000314 1.0e-48 196.4 99 91.9
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 1.0e-48 196.4 99 93.9
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 1.0e-48 196.4 99 93.9
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 1.0e-48 196.4 99 93.9
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 2.3e-48 195.3 99 92.9
Nitab4.5_0005100g0090 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.0e-48 194.9 99 92.9
Sc05g0004090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 3.9e-48 194.5 99 92.9
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 6.7e-48 193.7 99 90.9
BraSC103t45415Z Brassica rapa HOM05D000445 ORTHO05D000314 6.7e-48 193.7 99 90.9
BraSC103t45439Z Brassica rapa HOM05D000445 ORTHO05D000314 6.7e-48 193.7 99 90.9
BraSC143t45643Z Brassica rapa HOM05D000445 ORTHO05D000314 6.7e-48 193.7 99 90.9
BraSC59t46524Z Brassica rapa HOM05D000445 ORTHO05D000314 6.7e-48 193.7 99 90.9
Nitab4.5_0020349g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 6.7e-48 193.7 98 92.9
Nitab4.5_0023562g0040 Nicotiana tabacum HOM05D000445 ORTHO05D000314 6.7e-48 193.7 99 92.9
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 8.8e-48 193.4 100 92.0
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 8.8e-48 193.4 100 92.0
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 1.1e-47 193.0 101 92.1
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 1.1e-47 193.0 101 92.1
PGSC0003DMG400015060 Solanum tuberosum HOM05D000445 ORTHO05D000314 1.5e-47 192.6 100 93.0
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.6e-47 191.8 99 91.9
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 3.3e-47 191.4 99 90.9
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 3.3e-47 191.4 99 90.9
Lalb_Chr01g0014991 Lupinus albus HOM05D000445 ORTHO05D000314 5.7e-47 190.7 99 90.9
Nitab4.5_0000223g0170 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.7e-47 190.7 99 90.9
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 9.7e-47 189.9 99 90.9
Gorai.002G197300 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.3e-46 189.5 100 91.0
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 2.8e-46 188.3 98 91.8
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 2.8e-46 188.3 98 91.8
Nitab4.5_0014666g0060 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.8e-46 188.3 99 89.9
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.4e-45 186.0 101 88.1
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.4e-45 186.0 101 88.1
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.4e-45 186.0 101 88.1
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.4e-45 186.0 101 88.1
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.4e-45 186.0 101 88.1
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.4e-45 186.0 99 90.9
arahy.Tifrunner.gnm1.ann1.QI67VD Arachis hypogaea HOM05D000445 ORTHO05D000314 9.1e-45 183.3 99 88.9
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 9.1e-45 183.3 99 88.9
Nitab4.5_0004573g0040 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.2e-44 183.0 99 87.9
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 1.6e-44 182.6 100 88.0
Hund08796 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.0e-44 182.2 99 87.9
Hund10280 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.0e-44 182.2 99 87.9
Hund28591 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.0e-44 182.2 99 87.9
Hund28646 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.0e-44 182.2 99 87.9
Hund28772 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.0e-44 182.2 99 87.9
Hund29402 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.0e-44 182.2 99 87.9
Hund29423 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.0e-44 182.2 99 87.9
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 2.6e-44 181.8 99 87.9
LjContig00318g0009654 Lotus japonicus HOM05D000445 ORTHO05D000314 5.9e-44 180.6 99 86.9
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 5.9e-44 180.6 99 86.9
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 5.9e-44 180.6 99 86.9
Gohir.D01G159050 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.3e-43 179.5 99 87.9
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 1.7e-43 179.1 99 88.9
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 1.5e-42 176.0 99 84.8
Lsat_1_v5_gn_3_13441 Lactuca sativa HOM05D000445 ORTHO05D000314 1.9e-42 175.6 99 86.9
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 1.9e-42 175.6 99 86.9
Lsat_1_v5_gn_7_67161 Lactuca sativa HOM05D000445 ORTHO05D000314 2.5e-42 175.3 99 85.9
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQChr00c0349g0573991 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQChr00c0392g0574461 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQChr00c0394g0574511 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQChr00c0434g0574681 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQChr00c0533g0575561 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 4.2e-42 174.5 99 85.9
Lalb_Chr13g0292591 Lupinus albus HOM05D000445 ORTHO05D000314 1.0e-40 169.9 100 82.0
unitig_91.g26515 Utricularia gibba HOM05D000445 ORTHO05D000314 8.8e-40 166.8 101 82.2
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 8.8e-40 166.8 101 82.2
Nitab4.5_0002616g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.5e-39 166.0 101 81.2
Solyc01g017110.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.8e-38 161.0 99 79.8
Nn1g06697 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.8e-37 159.1 74 98.6
Nitab4.5_0004376g0140 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.5e-34 149.4 98 78.6
Gorai.009G069400 Gossypium raimondii HOM05D000445 ORTHO05D000314 9.4e-34 146.7 80 86.2
Lsat_1_v5_gn_9_42020 Lactuca sativa HOM05D000445 ORTHO05D000314 3.6e-33 144.8 100 74.0
Peaxi162Scf00211g00218 Petunia axillaris HOM05D000445 ORTHO05D000314 3.6e-33 144.8 72 94.4
RcHm_v2.0_Chr2g0118441 Rosa chinensis HOM05D000445 ORTHO05D000314 5.2e-32 141.0 101 72.3
Solyc04g024540.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.8e-32 140.6 80 82.5
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-29 132.9 69 92.8
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-29 132.9 69 92.8
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-29 132.9 69 92.8
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-29 132.9 69 92.8
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-29 132.9 69 92.8
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-29 132.9 69 92.8
HanXRQChr11g0336101 Helianthus annuus HOM05D000445 ORTHO05D000314 3.1e-29 131.7 99 70.7
HanXRQChr11g0336121 Helianthus annuus HOM05D000445 ORTHO05D000314 3.1e-29 131.7 99 70.7
Solyc00g500148.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.1e-29 131.7 69 91.3
SGA_v2.0_scaffold2596G54158 Striga asiatica HOM05D000445 ORTHO05D000314 2.0e-28 129.0 100 68.0
Gohir.A12G088950 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.7e-28 128.6 91 72.5
MD15G1134100 Malus domestica HOM05D003414 ORTHO05D003913 5.9e-28 127.5 61 96.7
Solyc09g031820.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.7e-27 125.9 68 89.7
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 4.2e-26 121.3 108 63.9
Gorai.002G166000 Gossypium raimondii HOM05D000445 ORTHO05D000314 2.3e-24 115.5 99 62.6
Nitab4.5_0022403g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.3e-24 115.5 78 78.2
Medtr2g019700 Medicago truncatula HOM05D000445 ORTHO05D000314 5.2e-24 114.4 99 60.6
Nitab4.5_0003101g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.2e-24 114.4 60 91.7
Nn021s41512 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.0e-23 112.5 53 98.1
Nn031s41600 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.0e-23 112.5 53 98.1
Lalb_Chr25g0281941 Lupinus albus HOM05D000445 ORTHO05D000314 1.3e-22 109.8 65 80.0
Medtr1g102200 Medicago truncatula HOM05D000445 ORTHO05D000314 1.8e-21 105.9 69 73.9
HanXRQChr00c0126g0571771 Helianthus annuus HOM05D000445 ORTHO05D000314 3.1e-21 105.1 62 82.3
Nn3g21393 Nelumbo nucifera HOM05D000445 ORTHO05D000314 5.9e-20 100.9 47 97.9
Medtr4g047930 Medicago truncatula HOM05D000445 ORTHO05D000314 1.0e-19 100.1 99 58.6
Solyc12g035970.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.5e-18 95.5 58 79.3
CARHR292730 Cardamine hirsuta HOM05D000445 ORTHO05D000314 5.6e-18 94.4 48 89.6
Gohir.A12G048150 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.0e-16 88.2 45 88.9
BolSC29t60563H Brassica oleracea HOM05D000445 ORTHO05D000314 4.6e-12 74.7 38 89.5
BolSC49t61211H Brassica oleracea HOM05D000445 ORTHO05D000314 1.3e-11 73.2 37 89.2
Nitab4.5_0001761g0240 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.3e-11 72.4 39 82.1
Nn070s42380 Nelumbo nucifera HOM05D000445 ORTHO05D000314 5.0e-11 71.2 33 97.0
Nitab4.5_0003415g0050 Nicotiana tabacum HOM05D000445 ORTHO05D000314 8.6e-11 70.5 37 83.8
Psat0s2261g0120 Pisum sativum HOM05D000012 ORTHO05D000804 4.3e-10 68.2 52 67.3
Lj2C1238G15 Lonicera japonica HOM05D000445 ORTHO05D000314 2.1e-09 65.9 36 83.3
BolSC47t61072H Brassica oleracea HOM05D000445 ORTHO05D000314 1.8e-08 62.8 30 93.3
Migut.D01323 Erythranthe guttata HOM05D000445 ORTHO05D000314 2.3e-08 62.4 99 40.4
Migut.D01405 Erythranthe guttata HOM05D000445 ORTHO05D000314 2.3e-08 62.4 99 40.4
MD15G1364300 Malus domestica HOM05D000445 ORTHO05D000314 4.0e-08 61.6 31 90.3
BolSC29t60491H Brassica oleracea HOM05D000445 ORTHO05D000314 6.8e-08 60.8 31 87.1
BolSC37t60781H Brassica oleracea HOM05D000445 ORTHO05D000314 6.8e-08 60.8 31 87.1
BolSC49t61128H Brassica oleracea HOM05D000445 ORTHO05D000314 6.8e-08 60.8 31 87.1
BraSC179t45786Z Brassica rapa HOM05D000445 ORTHO05D000314 6.8e-08 60.8 31 87.1
BraSC25t45893Z Brassica rapa HOM05D000445 ORTHO05D000314 6.8e-08 60.8 31 87.1
HanXRQChr00c0585g0576241 Helianthus annuus HOM05D000445 ORTHO05D000314 2.0e-07 59.3 31 90.3
HanXRQChr11g0326541 Helianthus annuus HOM05D000445 ORTHO05D000314 2.0e-07 59.3 31 90.3
Medtr5g010700 Medicago truncatula HOM05D000445 ORTHO05D000314 2.6e-07 58.9 116 41.4
Gohir.D10G110850 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.4e-07 58.2 76 43.4
Nn5g30923 Nelumbo nucifera HOM05D000445 ORTHO05D000314 5.8e-07 57.8 31 87.1
Nitab4.5_0007104g0120 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.9e-06 55.5 31 83.9


User provided reference genes

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