Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1219 Trochodendron aralioides HOM05D001031 ORTHO05D000857 5.4e-101 370.9 179 100.0
Ciclev10012288m.g Citrus clementina HOM05D001031 ORTHO05D000857 4.8e-17 92.0 134 44.8
Ciclev10013895m.g Citrus clementina HOM05D001031 ORTHO05D000857 1.2e-15 87.4 103 50.5
QL01p023758 Quercus lobata HOM05D001031 ORTHO05D000857 2.7e-15 86.3 100 47.0
Actinidia29009 Actinidia chinensis HOM05D001031 ORTHO05D000857 5.9e-15 85.1 102 48.0
Cpa.g.sc0.68 Carica papaya HOM05D001031 ORTHO05D000857 5.9e-15 85.1 171 35.7
Dinv16939 Davidia involucrata HOM05D001031 ORTHO05D000857 5.9e-15 85.1 101 48.5
Thecc.02G366500 Theobroma cacao HOM05D001031 ORTHO05D000857 2.9e-14 82.8 145 42.1
Nitab4.5_0004009g0010 Nicotiana tabacum HOM05D001031 ORTHO05D000857 3.8e-14 82.4 102 48.0
CSS0032313 Camellia sinensis var. sinensis HOM05D001031 ORTHO05D000857 5.0e-14 82.0 127 43.3
CSS0037610 Camellia sinensis var. sinensis HOM05D001031 ORTHO05D000857 5.0e-14 82.0 127 43.3
CiPaw.13G060500 Carya illinoinensis HOM05D001031 ORTHO05D000857 5.0e-14 82.0 149 39.6
Eucgr.K01300 Eucalyptus grandis HOM05D001031 ORTHO05D000857 5.0e-14 82.0 143 36.4
Lalb_Chr01g0023961 Lupinus albus HOM05D001031 ORTHO05D000857 6.5e-14 81.6 146 37.7
TAR633G2690 Trochodendron aralioides HOM05D001031 ORTHO05D000857 6.5e-14 81.6 121 47.9
Peaxi162Scf00732g10014 Petunia axillaris HOM05D001031 ORTHO05D000857 8.5e-14 81.3 102 45.1
Glyma.02G237900 Glycine max HOM05D001031 ORTHO05D000857 1.5e-13 80.5 124 41.1
LjContig00141g0016501 Lotus japonicus HOM05D001031 ORTHO05D000857 1.5e-13 80.5 96 50.0
Sabra04G0157500 Salix brachista HOM05D001031 ORTHO05D000857 1.5e-13 80.5 139 41.7
Lj6g0021716 Lotus japonicus HOM05D001031 ORTHO05D000857 1.9e-13 80.1 139 41.7
TPR.G13824 Trifolium pratense HOM05D001031 ORTHO05D000857 1.9e-13 80.1 129 43.4
Migut.J00011 Erythranthe guttata HOM05D001031 ORTHO05D000857 2.5e-13 79.7 95 49.5
Lj2C56T8 Lonicera japonica HOM05D001031 ORTHO05D000857 2.5e-13 79.7 100 48.0
HanXRQChr01g0000411 Helianthus annuus HOM05D001031 ORTHO05D000857 3.2e-13 79.3 108 46.3
Atru.chr8.62 Acer truncatum HOM05D001031 ORTHO05D000857 5.5e-13 78.6 140 38.6
MD04G1178000 Malus domestica HOM05D001031 ORTHO05D000857 5.5e-13 78.6 90 53.3
TWI77G0634 Tripterygium wilfordii HOM05D001031 ORTHO05D000857 5.5e-13 78.6 130 38.5
Hma1.2p1_0174F.1_g076620 Hydrangea macrophylla HOM05D001031 ORTHO05D000857 7.2e-13 78.2 153 36.6
Manes.09G121500 Manihot esculenta HOM05D001031 ORTHO05D000857 7.2e-13 78.2 146 40.4
THA.LOC104806655 Tarenaya hassleriana HOM05D001031 ORTHO05D000857 7.2e-13 78.2 126 41.3
MSTRG.10198 Avicennia marina HOM05D001031 ORTHO05D000857 9.4e-13 77.8 150 35.3
FvH4_6g09410 Fragaria vesca HOM05D001031 ORTHO05D000857 1.2e-12 77.4 143 39.2
FAN02G4181 Fragaria x ananassa HOM05D001031 ORTHO05D000857 1.2e-12 77.4 145 39.3
FAN14G3272 Fragaria x ananassa HOM05D001031 ORTHO05D000857 1.2e-12 77.4 143 39.2
PGR004G2073 Punica granatum HOM05D001031 ORTHO05D000857 1.6e-12 77.0 94 47.9
Sabra06G0086900 Salix brachista HOM05D001031 ORTHO05D000857 1.6e-12 77.0 96 49.0
Solyc10g074820.1 Solanum lycopersicum HOM05D001031 ORTHO05D000857 1.6e-12 77.0 129 41.9
RcHm_v2.0_Chr3g0459851 Rosa chinensis HOM05D001031 ORTHO05D000857 2.1e-12 76.6 165 33.9
Gohir.D10G114200 Gossypium hirsutum HOM05D001031 ORTHO05D000857 2.7e-12 76.3 113 46.0
Gorai.011G125900 Gossypium raimondii HOM05D001031 ORTHO05D000857 2.7e-12 76.3 113 46.0
HanXRQChr15g0464531 Helianthus annuus HOM05D001031 ORTHO05D000857 2.7e-12 76.3 142 38.0
Medtr8g461170 Medicago truncatula HOM05D001031 ORTHO05D000857 2.7e-12 76.3 155 38.1
Sopen10g027310 Solanum pennellii HOM05D001031 ORTHO05D000857 2.7e-12 76.3 129 41.1
PGSC0003DMG400027699 Solanum tuberosum HOM05D001031 ORTHO05D000857 2.7e-12 76.3 129 41.9
Ca_15084_v3 Cicer arietinum L. HOM05D001031 ORTHO05D000857 4.7e-12 75.5 144 38.9
ECA236G0626 Erigeron canadensis HOM05D001031 ORTHO05D000857 4.7e-12 75.5 164 34.1
Glyma.11G200500 Glycine max HOM05D001031 ORTHO05D000857 6.1e-12 75.1 151 36.4
Phvul.006G081000 Phaseolus vulgaris HOM05D001031 ORTHO05D000857 6.1e-12 75.1 151 37.1
Psat2g048960 Pisum sativum HOM05D001031 ORTHO05D000857 6.1e-12 75.1 91 48.4
DCAR_023960 Daucus carota HOM05D001031 ORTHO05D000857 8.0e-12 74.7 95 47.4
Potri.006G111700 Populus trichocarpa HOM05D001031 ORTHO05D000857 8.0e-12 74.7 136 40.4
Haze_24489 Corylus avellana HOM05D001031 ORTHO05D000857 1.0e-11 74.3 104 45.2
CsaV3_4G027400 Cucumis sativus L. HOM05D001031 ORTHO05D000857 1.0e-11 74.3 155 36.1
Oeu026928.2 Olea europaea HOM05D001031 ORTHO05D000857 1.0e-11 74.3 147 35.4
arahy.Tifrunner.gnm1.ann1.J8U28E Arachis hypogaea HOM05D001031 ORTHO05D000857 1.4e-11 73.9 98 49.0
arahy.Tifrunner.gnm1.ann1.ZRY0WK Arachis hypogaea HOM05D001031 ORTHO05D000857 1.4e-11 73.9 98 49.0
CANSAT54G1007 Cannabis sativa HOM05D001031 ORTHO05D000857 1.4e-11 73.9 94 46.8
Nitab4.5_0001203g0010 Nicotiana tabacum HOM05D001031 ORTHO05D000857 1.4e-11 73.9 102 45.1
Peaxi162Scf00374g00043 Petunia axillaris HOM05D001031 ORTHO05D000857 1.4e-11 73.9 140 38.6
Duzib268G0351 Durio zibethinus HOM05D001031 ORTHO05D000857 1.8e-11 73.6 111 45.0
Glyma.18G217800 Glycine max HOM05D001031 ORTHO05D000857 1.8e-11 73.6 137 39.4
MD12G1193600 Malus domestica HOM05D001031 ORTHO05D000857 1.8e-11 73.6 94 46.8
Psat5g145720 Pisum sativum HOM05D001031 ORTHO05D000857 1.8e-11 73.6 96 49.0
Rhsim05G0233600 Rhododendron simsii HOM05D001031 ORTHO05D000857 1.8e-11 73.6 130 41.5
Glyma.18G050200 Glycine max HOM05D001031 ORTHO05D000857 2.3e-11 73.2 90 48.9
Nitab4.5_0003037g0120 Nicotiana tabacum HOM05D001031 ORTHO05D000857 2.3e-11 73.2 95 46.3
VMungo0647G1489 Vigna mungo HOM05D001031 ORTHO05D000857 2.3e-11 73.2 123 39.8
Lalb_Chr07g0195801 Lupinus albus HOM05D001031 ORTHO05D000857 3.0e-11 72.8 96 46.9
Lalb_Chr18g0054061 Lupinus albus HOM05D001031 ORTHO05D000857 3.0e-11 72.8 158 36.1
Potri.016G141100 Populus trichocarpa HOM05D001031 ORTHO05D000857 3.0e-11 72.8 94 46.8
Thecc.04G147500 Theobroma cacao HOM05D001031 ORTHO05D000857 3.0e-11 72.8 127 40.9
CAN.G659.22 Capsicum annuum HOM05D001031 ORTHO05D000857 4.0e-11 72.4 95 44.2
FAN09G0294 Fragaria x ananassa HOM05D001031 ORTHO05D000857 4.0e-11 72.4 147 37.4
Nitab4.5_0001629g0030 Nicotiana tabacum HOM05D001031 ORTHO05D000857 4.0e-11 72.4 132 39.4
Cfa011855 Carpinus fangiana HOM05D001031 ORTHO05D000857 5.2e-11 72.0 104 45.2
Gohir.A10G152100 Gossypium hirsutum HOM05D001031 ORTHO05D000857 5.2e-11 72.0 113 44.2
Oeu041728.1 Olea europaea HOM05D001031 ORTHO05D000857 5.2e-11 72.0 145 35.9
Glyma.09G271500 Glycine max HOM05D001031 ORTHO05D000857 6.8e-11 71.6 93 45.2
CiPaw.10G166800 Carya illinoinensis HOM05D001031 ORTHO05D000857 8.8e-11 71.2 94 46.8
Phvul.008G243900 Phaseolus vulgaris HOM05D001031 ORTHO05D000857 8.8e-11 71.2 159 34.0
VMungo0540G2340 Vigna mungo HOM05D001031 ORTHO05D000857 8.8e-11 71.2 151 37.7
COL.COLO4_05682 Corchorus olitorius HOM05D001031 ORTHO05D000857 1.2e-10 70.9 141 39.0
Haze_21229 Corylus avellana HOM05D001031 ORTHO05D000857 1.2e-10 70.9 110 41.8
Medtr3g062840 Medicago truncatula HOM05D001031 ORTHO05D000857 1.2e-10 70.9 141 38.3
TPR.G30731 Trifolium pratense HOM05D001031 ORTHO05D000857 1.5e-10 70.5 124 40.3
Actinidia34506 Actinidia chinensis HOM05D001031 ORTHO05D000857 2.6e-10 69.7 138 34.1
BolC3t16677H Brassica oleracea HOM05D001031 ORTHO05D000857 2.6e-10 69.7 120 41.7
AUR62042835 Chenopodium quinoa HOM05D001031 ORTHO05D000857 2.6e-10 69.7 90 46.7
Lalb_Chr12g0210701 Lupinus albus HOM05D001031 ORTHO05D000857 3.4e-10 69.3 94 47.9
FvH4_3g04260 Fragaria vesca HOM05D001031 ORTHO05D000857 4.4e-10 68.9 144 39.6
Medtr5g075750 Medicago truncatula HOM05D001031 ORTHO05D000857 4.4e-10 68.9 87 46.0
PSO384G2441 Papaver somniferum HOM05D001031 ORTHO05D000857 4.4e-10 68.9 130 39.2
HanXRQChr11g0345061 Helianthus annuus HOM05D001031 ORTHO05D000857 5.7e-10 68.6 90 44.4
Sp3g07050 Schrenkiella parvula HOM05D001031 ORTHO05D000857 5.7e-10 68.6 128 42.2
Aa31LG5G18660 Aethionema arabicum HOM05D001031 ORTHO05D000857 7.5e-10 68.2 109 43.1
AT3G08600 Arabidopsis thaliana HOM05D001031 ORTHO05D000857 7.5e-10 68.2 129 42.6
CAN.G62.56 Capsicum annuum HOM05D001031 ORTHO05D000857 7.5e-10 68.2 114 34.2
Lsat_1_v5_gn_5_151380 Lactuca sativa HOM05D001031 ORTHO05D000857 7.5e-10 68.2 103 43.7
PSO339G2038 Papaver somniferum HOM05D001031 ORTHO05D000857 7.5e-10 68.2 130 38.5
TWI53G0866 Tripterygium wilfordii HOM05D001031 ORTHO05D000857 7.5e-10 68.2 90 45.6
CDE04G3313 Ceratophyllum demersum HOM05D001031 ORTHO05D000857 9.8e-10 67.8 114 39.5
Peaxi162Scf00455g00122 Petunia axillaris HOM05D001031 ORTHO05D000857 9.8e-10 67.8 120 36.7
ClCG04G006160 Citrullus lanatus HOM05D001031 ORTHO05D000857 1.3e-09 67.4 94 44.7
MELO3C025259.2 Cucumis melo HOM05D001031 ORTHO05D000857 1.3e-09 67.4 149 34.9
QL07p031337 Quercus lobata HOM05D001031 ORTHO05D000857 1.3e-09 67.4 90 46.7
BcaC01g04186 Brassica carinata HOM05D001031 ORTHO05D000857 1.7e-09 67.0 120 40.8
A05p40180 Brassica napus HOM05D001031 ORTHO05D000857 1.7e-09 67.0 128 38.3
C03p44070 Brassica napus HOM05D001031 ORTHO05D000857 1.7e-09 67.0 120 40.8
FAN25G0262 Fragaria x ananassa HOM05D001031 ORTHO05D000857 1.7e-09 67.0 103 44.7
Hma1.2p1_0170F.1_g075360 Hydrangea macrophylla HOM05D001031 ORTHO05D000857 1.7e-09 67.0 136 36.8
Phvul.010G059500 Phaseolus vulgaris HOM05D001031 ORTHO05D000857 1.7e-09 67.0 95 47.4
Aqoxy4G03310 Aquilegia oxysepala HOM05D001031 ORTHO05D000857 2.2e-09 66.6 93 45.2
AL3G19580 Arabidopsis lyrata HOM05D001031 ORTHO05D000857 2.2e-09 66.6 129 41.9
Eucgr.A00808 Eucalyptus grandis HOM05D001031 ORTHO05D000857 2.2e-09 66.6 90 43.3
Carub.0003s0773 Capsella rubella HOM05D001031 ORTHO05D000857 2.8e-09 66.2 118 41.5
Nn3g17113 Nelumbo nucifera HOM05D001031 ORTHO05D000857 2.8e-09 66.2 111 40.5
Peaxi162Scf00455g01310 Petunia axillaris HOM05D001031 ORTHO05D000857 2.8e-09 66.2 112 35.7
BcaB04g18585 Brassica carinata HOM05D001031 ORTHO05D000857 3.7e-09 65.9 126 39.7
BolC5t34571H Brassica oleracea HOM05D001031 ORTHO05D000857 3.7e-09 65.9 127 37.0
ECA247G1310 Erigeron canadensis HOM05D001478 ORTHO05D000857 3.7e-09 65.9 137 38.7
CSS0040317 Camellia sinensis var. sinensis HOM05D001031 ORTHO05D000857 4.9e-09 65.5 87 44.8
Cc06_g00190 Coffea canephora HOM05D001031 ORTHO05D000857 4.9e-09 65.5 97 40.2
ECA248G0606 Erigeron canadensis HOM05D001031 ORTHO05D000857 4.9e-09 65.5 141 30.5
Nitab4.5_0003559g0050 Nicotiana tabacum HOM05D001031 ORTHO05D000857 4.9e-09 65.5 96 40.6
EL10Ac4g08549 Beta vulgaris HOM05D001031 ORTHO05D000857 6.3e-09 65.1 87 43.7
Lsat_1_v5_gn_8_109721 Lactuca sativa HOM05D001031 ORTHO05D000857 6.3e-09 65.1 88 43.2
Lj3g0019388 Lotus japonicus HOM05D001031 ORTHO05D000857 6.3e-09 65.1 135 34.8
Solyc06g060520.1 Solanum lycopersicum HOM05D001031 ORTHO05D000857 6.3e-09 65.1 109 34.9
Aa31LG5G11340 Aethionema arabicum HOM05D001031 ORTHO05D000857 8.3e-09 64.7 122 43.4
Lalb_Chr15g0085641 Lupinus albus HOM05D001031 ORTHO05D000857 8.3e-09 64.7 129 41.9
PGSC0003DMG400017580 Solanum tuberosum HOM05D001031 ORTHO05D000857 8.3e-09 64.7 89 39.3
Sed0026024 Sechium edule HOM05D001031 ORTHO05D000857 1.1e-08 64.3 101 43.6
AUR62035475 Chenopodium quinoa HOM05D001031 ORTHO05D000857 1.4e-08 63.9 90 44.4
MBI15_g31035_MAGBIO Magnolia biondii HOM05D001031 ORTHO05D000857 1.4e-08 63.9 141 35.5
SEGI_31978 Sequoiadendron giganteum HOM05D001031 ORTHO05D000857 1.4e-08 63.9 96 37.5
Manes.02G013832 Manihot esculenta HOM05D001031 ORTHO05D000857 1.8e-08 63.5 81 39.5
Sopen06g020640 Solanum pennellii HOM05D001031 ORTHO05D000857 1.8e-08 63.5 113 33.6
PGSC0003DMG400001880 Solanum tuberosum HOM05D001031 ORTHO05D000857 1.8e-08 63.5 104 36.5
CDE12G0575 Ceratophyllum demersum HOM05D001031 ORTHO05D000857 2.4e-08 63.2 138 34.8
Lalb_Chr24g0400431 Lupinus albus HOM05D001031 ORTHO05D000857 2.4e-08 63.2 108 39.8
Nitab4.5_0000195g0080 Nicotiana tabacum HOM05D001031 ORTHO05D000857 2.4e-08 63.2 97 43.3
Solyc06g060510.2 Solanum lycopersicum HOM05D001031 ORTHO05D000857 2.4e-08 63.2 98 41.8
Dinv38879 Davidia involucrata HOM05D001597 ORTHO05D001512 3.1e-08 62.8 80 35.0
Nitab4.5_0003559g0010 Nicotiana tabacum HOM05D001031 ORTHO05D000857 3.1e-08 62.8 97 44.3
Nitab4.5_0003559g0030 Nicotiana tabacum HOM05D001031 ORTHO05D000857 3.1e-08 62.8 97 42.3
Sopen04g024950 Solanum pennellii HOM05D001031 ORTHO05D000857 3.1e-08 62.8 104 37.5
Sopen06g020630 Solanum pennellii HOM05D001031 ORTHO05D000857 3.1e-08 62.8 98 41.8
PGSC0003DMG400017579 Solanum tuberosum HOM05D001031 ORTHO05D000857 3.1e-08 62.8 98 40.8
Peaxi162Scf00424g00034 Petunia axillaris HOM05D001031 ORTHO05D000857 4.1e-08 62.4 93 43.0
Thhalv10022271m.g Eutrema salsugineum HOM05D001031 ORTHO05D000857 5.4e-08 62.0 95 45.3
HanXRQChr04g0096741 Helianthus annuus HOM05D001031 ORTHO05D000857 5.4e-08 62.0 91 44.0
ATR0751G099 Amborella trichopoda HOM05D001031 ORTHO05D000857 7.0e-08 61.6 96 42.7
Lsat_1_v5_gn_5_177181 Lactuca sativa HOM05D001031 ORTHO05D000857 7.0e-08 61.6 103 37.9
CAN.G62.55 Capsicum annuum HOM05D001031 ORTHO05D000857 9.1e-08 61.2 98 41.8
HanXRQChr10g0286181 Helianthus annuus HOM05D001031 ORTHO05D000857 9.1e-08 61.2 123 37.4
HPP92_019760 Vanilla planifolia HOM05D001031 ORTHO05D000857 9.1e-08 61.2 119 40.3
SHI12949 Sapria himalayana HOM05D001031 ORTHO05D000857 1.2e-07 60.8 86 43.0
SEGI_31571 Sequoiadendron giganteum HOM05D001031 ORTHO05D000857 1.2e-07 60.8 90 38.9
C05p59260 Brassica napus HOM05D001031 ORTHO05D000857 2.0e-07 60.1 127 35.4
Aa31LG5G18670 Aethionema arabicum HOM05D001031 ORTHO05D000857 2.7e-07 59.7 132 36.4
Nitab4.5_0018862g0010 Nicotiana tabacum HOM05D001031 ORTHO05D000857 2.7e-07 59.7 134 37.3
Solyc04g055100.1 Solanum lycopersicum HOM05D001031 ORTHO05D000857 2.7e-07 59.7 104 36.5
Lj1P112T18 Lonicera japonica HOM05D001031 ORTHO05D000857 4.5e-07 58.9 101 36.6
Nitab4.5_0000195g0060 Nicotiana tabacum HOM05D001031 ORTHO05D000857 7.7e-07 58.2 116 37.1
SEGI_04224 Sequoiadendron giganteum HOM05D001031 ORTHO05D000857 7.7e-07 58.2 92 34.8
SEGI_14671 Sequoiadendron giganteum HOM05D001031 ORTHO05D000857 7.7e-07 58.2 92 34.8
Dinv28754 Davidia involucrata HOM05D001031 ORTHO05D000857 1.0e-06 57.8 100 39.0
MBI07_g11387_MAGBIO Magnolia biondii HOM05D001031 ORTHO05D000857 1.3e-06 57.4 118 32.2
Nitab4.5_0003559g0020 Nicotiana tabacum HOM05D001031 ORTHO05D000857 1.7e-06 57.0 116 37.1
ECA247G2060 Erigeron canadensis HOM05D001031 ORTHO05D000857 2.3e-06 56.6 93 36.6
Nitab4.5_0000195g0100 Nicotiana tabacum HOM05D001031 ORTHO05D000857 2.3e-06 56.6 95 40.0
HPP92_018082 Vanilla planifolia HOM05D001031 ORTHO05D000857 2.9e-06 56.2 104 39.4
CAN.G986.53 Capsicum annuum HOM05D001031 ORTHO05D000857 6.6e-06 55.1 122 34.4
FvH4_5g03780 Fragaria vesca HOM05D001031 ORTHO05D000857 6.6e-06 55.1 114 32.5
FAN18G1936 Fragaria x ananassa HOM05D001031 ORTHO05D000857 6.6e-06 55.1 114 32.5
HanXRQChr11g0327581 Helianthus annuus HOM05D001031 ORTHO05D000857 8.6e-06 54.7 95 35.8
TAR636G2615 Trochodendron aralioides HOM05D001031 ORTHO05D000857 8.6e-06 54.7 81 38.3


User provided reference genes

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