Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0416 Trochodendron aralioides HOM05D005945 ORTHO05D006749 4.7e-172 607.8 323 100.0
TAR628G0886 Trochodendron aralioides HOM05D005945 ORTHO05D006749 8.5e-105 384.4 197 99.0
TAR376G0838 Trochodendron aralioides HOM05D005945 ORTHO05D006749 2.3e-78 296.6 199 76.4
Nn5g29549 Nelumbo nucifera HOM05D005945 ORTHO05D006749 1.1e-51 208.0 199 56.3
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 1.9e-51 207.2 208 54.8
GSVIVG01009690001 Vitis vinifera HOM05D005945 ORTHO05D006749 2.7e-50 203.4 188 59.6
Dinv36067 Davidia involucrata HOM05D005945 ORTHO05D006749 7.8e-50 201.8 209 53.6
Potri.014G181200 Populus trichocarpa HOM05D005945 ORTHO05D006749 6.6e-49 198.7 184 56.5
CSS0038834 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 1.9e-48 197.2 200 54.5
PSO675G9049 Papaver somniferum HOM05D005945 ORTHO05D006749 4.3e-48 196.1 205 50.7
CSS0001698 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 7.3e-48 195.3 200 54.0
Lj4A42T73 Lonicera japonica HOM05D005945 ORTHO05D006749 2.1e-47 193.7 179 58.1
PSO541G4169 Papaver somniferum HOM05D005945 ORTHO05D006749 2.4e-46 190.3 206 49.5
Oeu056183.1 Olea europaea HOM05D005945 ORTHO05D006749 1.7e-44 184.1 180 56.7
Nitab4.5_0000110g0520 Nicotiana tabacum HOM05D005945 ORTHO05D006749 2.2e-44 183.7 188 53.2
Actinidia15315 Actinidia chinensis HOM05D005945 ORTHO05D006749 4.9e-44 182.6 215 50.7
Sabra14G0141200 Salix brachista HOM05D005945 ORTHO05D006749 6.4e-44 182.2 216 50.5
Cc10_g03040 Coffea canephora HOM05D005945 ORTHO05D006749 8.4e-44 181.8 183 53.6
PGSC0003DMG400005162 Solanum tuberosum HOM05D005945 ORTHO05D006749 2.4e-43 180.3 193 51.8
Nitab4.5_0003783g0040 Nicotiana tabacum HOM05D005945 ORTHO05D006749 4.2e-43 179.5 191 52.9
Solyc04g080200.4 Solanum lycopersicum HOM05D005945 ORTHO05D006749 9.3e-43 178.3 193 51.3
Sopen04g033790 Solanum pennellii HOM05D005945 ORTHO05D006749 9.3e-43 178.3 193 51.3
Atru.chr13.502 Acer truncatum HOM05D005945 ORTHO05D006749 2.7e-42 176.8 181 54.1
Thecc.08G024700 Theobroma cacao HOM05D005945 ORTHO05D006749 1.0e-41 174.9 174 58.6
Haze_17984 Corylus avellana HOM05D005945 ORTHO05D006749 1.7e-41 174.1 234 45.7
Cfa018140 Carpinus fangiana HOM05D005945 ORTHO05D006749 6.6e-41 172.2 228 45.6
COL.COLO4_26338 Corchorus olitorius HOM05D005945 ORTHO05D006749 6.6e-41 172.2 186 54.3
Migut.C00710 Erythranthe guttata HOM05D005945 ORTHO05D006749 6.6e-41 172.2 177 52.5
Peaxi162Scf00690g00118 Petunia axillaris HOM05D005945 ORTHO05D006749 6.6e-41 172.2 152 57.2
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 2.5e-40 170.2 190 49.5
Prupe.1G381200 Prunus persica HOM05D005945 ORTHO05D006749 7.3e-40 168.7 158 57.0
MBI16_g17464_MAGBIO Magnolia biondii HOM05D005945 ORTHO05D006749 9.6e-40 168.3 203 50.2
DCAR_008766 Daucus carota HOM05D005945 ORTHO05D006749 1.6e-39 167.5 178 52.8
MSTRG.25161 Avicennia marina HOM05D005945 ORTHO05D006749 2.1e-39 167.2 192 52.6
CiPaw.15G076000 Carya illinoinensis HOM05D005945 ORTHO05D006749 2.8e-39 166.8 245 42.9
RcHm_v2.0_Chr6g0300761 Rosa chinensis HOM05D005945 ORTHO05D006749 1.4e-38 164.5 200 47.0
Manes.05G161400 Manihot esculenta HOM05D005945 ORTHO05D006749 2.4e-38 163.7 182 52.7
CANSAT25G3494 Cannabis sativa HOM05D005945 ORTHO05D006749 4.0e-38 162.9 179 50.3
QL02p007988 Quercus lobata HOM05D005945 ORTHO05D006749 4.0e-38 162.9 168 54.2
HanXRQChr04g0105591 Helianthus annuus HOM05D005945 ORTHO05D006749 6.9e-38 162.2 186 47.8
Aqoxy6G01057 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 9.0e-38 161.8 184 49.5
Gohir.A06G010700 Gossypium hirsutum HOM05D005945 ORTHO05D006749 2.0e-37 160.6 185 53.0
Gohir.D06G008100 Gossypium hirsutum HOM05D005945 ORTHO05D006749 2.6e-37 160.2 185 53.5
Gorai.010G010800 Gossypium raimondii HOM05D005945 ORTHO05D006749 2.6e-37 160.2 185 53.5
arahy.Tifrunner.gnm1.ann1.Q0ZVI3 Arachis hypogaea HOM05D005945 ORTHO05D006749 9.9e-37 158.3 179 52.0
Oeu036192.1 Olea europaea HOM05D005945 ORTHO05D006749 9.9e-37 158.3 205 46.3
FAN27G1966 Fragaria x ananassa HOM05D005945 ORTHO05D006749 1.7e-36 157.5 212 44.8
SGA_v2.0_scaffold326G48709 Striga asiatica HOM05D005945 ORTHO05D006749 4.9e-36 156.0 172 50.6
TWI12G1232 Tripterygium wilfordii HOM05D005945 ORTHO05D006749 8.4e-36 155.2 187 46.0
Manes.18G028200 Manihot esculenta HOM05D005945 ORTHO05D006749 1.1e-35 154.8 192 47.4
Duzib093G2051 Durio zibethinus HOM05D005945 ORTHO05D006749 1.9e-35 154.1 175 53.7
Sc15g0006890 Simmondsia chinensis HOM05D005945 ORTHO05D006749 1.9e-35 154.1 160 52.5
Eucgr.F01555 Eucalyptus grandis HOM05D005945 ORTHO05D006749 2.4e-35 153.7 191 48.7
FvH4_2g39990 Fragaria vesca HOM05D005945 ORTHO05D006749 2.4e-35 153.7 202 47.0
Glyma.03G071500 Glycine max HOM05D005945 ORTHO05D006749 7.1e-35 152.1 175 52.0
ECA247G0868 Erigeron canadensis HOM05D005945 ORTHO05D006749 1.6e-34 151.0 195 45.6
FAN15G0837 Fragaria x ananassa HOM05D005945 ORTHO05D006749 2.7e-34 150.2 202 46.0
HanXRQChr04g0105581 Helianthus annuus HOM05D005945 ORTHO05D006749 2.7e-34 150.2 202 43.1
MD08G1033800 Malus domestica HOM05D005945 ORTHO05D006749 3.5e-34 149.8 191 47.1
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 4.6e-34 149.4 152 55.9
Cpa.g.sc64.76 Carica papaya HOM05D005945 ORTHO05D006749 4.6e-34 149.4 156 54.5
FAN20G0334 Fragaria x ananassa HOM05D005945 ORTHO05D006749 4.6e-34 149.4 202 46.0
Hund26580 Selenicereus undatus HOM05D005945 ORTHO05D006749 6.0e-34 149.1 181 49.2
Glyma.01G104600 Glycine max HOM05D005945 ORTHO05D006749 6.7e-33 145.6 160 52.5
MELO3C010931.2 Cucumis melo HOM05D005945 ORTHO05D006749 1.1e-32 144.8 130 55.4
arahy.Tifrunner.gnm1.ann1.01TKSZ Arachis hypogaea HOM05D005945 ORTHO05D006749 1.5e-32 144.4 212 44.3
VMungo0331G0095 Vigna mungo HOM05D005945 ORTHO05D006749 1.5e-32 144.4 135 57.8
ClCG08G015230 Citrullus lanatus HOM05D005945 ORTHO05D006749 1.9e-32 144.1 130 56.2
Phvul.010G012000 Phaseolus vulgaris HOM05D005945 ORTHO05D006749 3.3e-32 143.3 183 47.5
Psat7g242000 Pisum sativum HOM05D005945 ORTHO05D006749 4.3e-32 142.9 192 44.8
THA.LOC104803244 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 7.4e-32 142.1 182 48.4
Lj3g0003314 Lotus japonicus HOM05D005945 ORTHO05D006749 1.3e-31 141.4 185 45.9
HPP92_021270 Vanilla planifolia HOM05D005945 ORTHO05D006749 3.7e-31 139.8 209 45.5
CsaV3_2G028570 Cucumis sativus L. HOM05D005945 ORTHO05D006749 4.8e-31 139.4 130 53.8
Sed0009733 Sechium edule HOM05D005945 ORTHO05D006749 1.8e-30 137.5 172 47.1
Ca_03064_v3 Cicer arietinum L. HOM05D005945 ORTHO05D006749 9.0e-30 135.2 181 43.1
vmacro21631 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 9.0e-30 135.2 134 53.0
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 9.0e-30 135.2 168 49.4
TPR.G32532 Trifolium pratense HOM05D005945 ORTHO05D006749 1.2e-29 134.8 188 43.1
Medtr4g019490 Medicago truncatula HOM05D005945 ORTHO05D006749 4.5e-29 132.9 190 43.2
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 7.6e-29 132.1 181 43.6
Lalb_Chr19g0125071 Lupinus albus HOM05D005945 ORTHO05D006749 9.9e-29 131.7 194 41.2
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 1.7e-28 131.0 180 47.2
Rhsim06G0034700 Rhododendron simsii HOM05D005945 ORTHO05D006749 1.7e-28 131.0 175 46.3
Zm00001eb021170 Zea mays HOM05D005945 ORTHO05D006749 1.7e-28 131.0 169 47.9
BcaC07g39998 Brassica carinata HOM05D005945 ORTHO05D006749 8.4e-28 128.6 180 40.6
C08p32110 Brassica napus HOM05D005945 ORTHO05D006749 8.4e-28 128.6 180 40.6
BolC8t50829H Brassica oleracea HOM05D005945 ORTHO05D006749 8.4e-28 128.6 180 40.6
PGR031G1506 Punica granatum HOM05D005945 ORTHO05D006749 1.9e-27 127.5 151 50.3
Lj2g0002553 Lotus japonicus HOM05D005945 ORTHO05D006749 2.4e-27 127.1 175 44.6
A09p49740 Brassica napus HOM05D005945 ORTHO05D006749 4.2e-27 126.3 179 39.7
BraA09t40427Z Brassica rapa HOM05D005945 ORTHO05D006749 4.2e-27 126.3 179 39.7
EL10Ac1g01817 Beta vulgaris HOM05D005945 ORTHO05D006749 7.1e-27 125.6 178 45.5
AT3G56870 Arabidopsis thaliana HOM05D005945 ORTHO05D006749 9.3e-27 125.2 195 40.0
Gohir.D02G094500 Gossypium hirsutum HOM05D005945 ORTHO05D006749 9.3e-27 125.2 176 44.9
Carub.0005s2360 Capsella rubella HOM05D005945 ORTHO05D006749 2.1e-26 124.0 179 39.7
AL5G38260 Arabidopsis lyrata HOM05D005945 ORTHO05D006749 2.7e-26 123.6 136 49.3
BcaC07g40112 Brassica carinata HOM05D005945 ORTHO05D006749 2.7e-26 123.6 179 39.7
Aa31LG10G11720 Aethionema arabicum HOM05D005945 ORTHO05D006749 1.3e-25 121.3 179 40.8
Sed0010063 Sechium edule HOM05D005945 ORTHO05D006749 1.3e-25 121.3 136 47.1
Lalb_Chr03g0042671 Lupinus albus HOM05D005945 ORTHO05D006749 6.7e-25 119.0 131 49.6
Sp5g05720 Schrenkiella parvula HOM05D005945 ORTHO05D006749 6.7e-25 119.0 179 38.0
Gorai.005G107400 Gossypium raimondii HOM05D005945 ORTHO05D006749 1.5e-24 117.9 178 43.8
Ah.11g043130 Amaranthus hybridus HOM05D005945 ORTHO05D006749 3.3e-24 116.7 177 42.4
Thhalv10005811m.g Eutrema salsugineum HOM05D005945 ORTHO05D006749 3.3e-24 116.7 181 38.7
Aqoxy4G01586 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 4.3e-24 116.3 179 44.7
AUR62043686 Chenopodium quinoa HOM05D005945 ORTHO05D006749 3.7e-23 113.2 210 41.4
Actinidia22556 Actinidia chinensis HOM05D005945 ORTHO05D006749 8.2e-23 112.1 110 58.2
TAR381G0602 Trochodendron aralioides HOM05D005945 ORTHO05D006749 1.4e-22 111.3 154 46.8
MD15G1030400 Malus domestica HOM05D005945 ORTHO05D006749 1.5e-21 107.8 123 48.8
AUR62038825 Chenopodium quinoa HOM05D005945 ORTHO05D006749 2.5e-19 100.5 144 45.8
CARHR167020 Cardamine hirsuta HOM05D005945 ORTHO05D006749 5.5e-19 99.4 181 37.6
Aqoxy4G01559 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 1.6e-18 97.8 146 42.5
Ah.05g167400 Amaranthus hybridus HOM05D005945 ORTHO05D006749 3.7e-15 86.7 143 42.0
HPP92_021280 Vanilla planifolia HOM05D050438 ORTHO05D006749 3.7e-15 86.7 185 39.5
CDE04G3738 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 1.7e-12 77.8 121 38.0
Sabra02G0199400 Salix brachista HOM05D005945 ORTHO05D006749 1.7e-12 77.8 83 55.4
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 2.2e-12 77.4 145 34.5
Mapoly0005s0138 Marchantia polymorpha HOM05D036654 ORTHO05D006749 6.1e-10 69.3 181 28.7
Cfa002543 Carpinus fangiana HOM05D023789 ORTHO05D022263 1.5e-08 64.7 41 63.4
Cfa019579 Carpinus fangiana HOM05D023789 ORTHO05D022263 1.3e-07 61.6 41 58.5
CDE02G0146 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 1.7e-07 61.2 110 35.5
Haze_16000 Corylus avellana HOM05D013106 ORTHO05D017812 3.7e-07 60.1 44 54.5
Haze_01861 Corylus avellana HOM05D013106 ORTHO05D017812 4.8e-07 59.7 44 56.8
Haze_16169 Corylus avellana HOM05D013106 ORTHO05D017812 6.3e-07 59.3 44 54.5
SGA_v2.0_scaffold112G31586 Striga asiatica HOM05D050495 ORTHO05D022263 8.2e-07 58.9 42 50.0
Cfa005739 Carpinus fangiana HOM05D013106 ORTHO05D017812 1.4e-06 58.2 89 34.8
Nn3g21370 Nelumbo nucifera HOM05D000034 ORTHO05D000037 1.4e-06 58.2 39 59.0
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 1.4e-06 58.2 136 29.4
SGA_v2.0_scaffold74G24726 Striga asiatica HOM05D008147 ORTHO05D399922 1.8e-06 57.8 60 46.7
CBR_g25863 Chara braunii HOM05D005945 ORTHO05D006749 4.1e-06 56.6 157 28.7
Pp3c7_23790 Physcomitrium patens HOM05D036654 ORTHO05D050357 5.3e-06 56.2 180 25.6
SalBow7G2556 Salvia bowleyana HOM05D006352 ORTHO05D012116 5.3e-06 56.2 65 47.7
Cfa010933 Carpinus fangiana HOM05D000001 ORTHO05D010162 6.9e-06 55.8 44 54.5
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 6.9e-06 55.8 64 37.5


User provided reference genes

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