Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0376 Trochodendron aralioides HOM05D001418 ORTHO05D003753 5.8e-82 307.8 186 100.0
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 8.5e-41 171.0 190 62.1
TAR625G0656 Trochodendron aralioides HOM05D001418 ORTHO05D003753 8.3e-28 127.9 136 55.9
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 3.5e-26 122.5 200 45.5
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 2.0e-18 96.7 189 41.8
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 2.7e-18 96.3 189 35.4
HPP92_004456 Vanilla planifolia HOM05D001418 ORTHO05D003753 8.6e-17 91.3 184 34.8
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 1.9e-16 90.1 182 34.1
ClCG02G000350 Citrullus lanatus HOM05D001418 ORTHO05D003753 2.1e-15 86.7 75 49.3
Eucgr.H05149 Eucalyptus grandis HOM05D001418 ORTHO05D003753 2.1e-15 86.7 195 42.6
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 2.8e-15 86.3 178 33.1
Sed0024034 Sechium edule HOM05D001418 ORTHO05D003753 2.8e-15 86.3 75 48.0
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 3.6e-15 85.9 178 32.6
Thecc.01G136200 Theobroma cacao HOM05D001418 ORTHO05D003753 3.6e-15 85.9 193 32.1
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 6.1e-15 85.1 65 53.8
Sabra07G0084500 Salix brachista HOM05D001418 ORTHO05D003753 6.1e-15 85.1 186 39.8
MELO3C023225.2 Cucumis melo HOM05D001418 ORTHO05D003753 8.0e-15 84.7 75 50.7
Ah.02g114820 Amaranthus hybridus HOM05D001418 ORTHO05D003753 1.0e-14 84.3 176 34.1
Ciclev10003211m.g Citrus clementina HOM05D001418 ORTHO05D003753 1.4e-14 84.0 75 52.0
Potri.005G066500 Populus trichocarpa HOM05D001418 ORTHO05D003753 1.8e-14 83.6 186 36.0
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 2.3e-14 83.2 181 29.3
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 2.3e-14 83.2 185 28.6
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 2.3e-14 83.2 142 38.0
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 5.2e-14 82.0 185 28.6
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 5.2e-14 82.0 199 37.2
ATR1001G015 Amborella trichopoda HOM05D007511 ORTHO05D003753 6.8e-14 81.6 199 33.7
Aqoxy6G00297 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 6.8e-14 81.6 189 36.5
Atru.chr4.944 Acer truncatum HOM05D001418 ORTHO05D003753 1.2e-13 80.9 69 49.3
CsaV3_2G019490 Cucumis sativus L. HOM05D001418 ORTHO05D003753 1.5e-13 80.5 186 31.7
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 1.5e-13 80.5 184 29.9
Duzib187G1961 Durio zibethinus HOM05D001418 ORTHO05D003753 3.4e-13 79.3 188 30.9
TPR.G37392 Trifolium pratense HOM05D001418 ORTHO05D003753 3.4e-13 79.3 72 45.8
Duzib264G0973 Durio zibethinus HOM05D001418 ORTHO05D003753 5.8e-13 78.6 196 31.6
FvH4_7g07110 Fragaria vesca HOM05D007511 ORTHO05D003753 5.8e-13 78.6 187 32.1
FAN06G3938 Fragaria x ananassa HOM05D007511 ORTHO05D003753 5.8e-13 78.6 187 32.1
Medtr8g094040 Medicago truncatula HOM05D001418 ORTHO05D003753 5.8e-13 78.6 72 47.2
Sc16g0009500 Simmondsia chinensis HOM05D001418 ORTHO05D003753 5.8e-13 78.6 148 29.1
Lalb_Chr07g0184281 Lupinus albus HOM05D001418 ORTHO05D003753 7.5e-13 78.2 72 45.8
Lalb_Chr12g0203061 Lupinus albus HOM05D001418 ORTHO05D003753 7.5e-13 78.2 72 45.8
Sc06g0005400 Simmondsia chinensis HOM05D001418 ORTHO05D003753 7.5e-13 78.2 186 34.4
Cpa.g.sc1441.4 Carica papaya HOM05D001418 ORTHO05D003753 9.8e-13 77.8 196 39.3
Lalb_Chr13g0296701 Lupinus albus HOM05D001418 ORTHO05D003753 9.8e-13 77.8 72 47.2
QL10p041674 Quercus lobata HOM05D001418 ORTHO05D003753 9.8e-13 77.8 71 46.5
QL10p041864 Quercus lobata HOM05D001418 ORTHO05D003753 9.8e-13 77.8 71 46.5
Sed0004234 Sechium edule HOM05D001418 ORTHO05D003753 9.8e-13 77.8 139 33.1
MD00G1091900 Malus domestica HOM05D001418 ORTHO05D003753 2.2e-12 76.6 189 34.9
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 2.9e-12 76.3 199 36.2
PGR102G3103 Punica granatum HOM05D001418 ORTHO05D003753 3.7e-12 75.9 195 28.7
Glyma.06G155400 Glycine max HOM05D001418 ORTHO05D003753 4.9e-12 75.5 69 44.9
Sabra05G0054800 Salix brachista HOM05D001418 ORTHO05D003753 8.3e-12 74.7 72 43.1
CiPaw.03G118500 Carya illinoinensis HOM05D001418 ORTHO05D003753 1.1e-11 74.3 75 45.3
CiPaw.04G080200 Carya illinoinensis HOM05D001418 ORTHO05D003753 1.1e-11 74.3 203 39.4
HPP92_025164 Vanilla planifolia HOM05D001418 ORTHO05D003753 1.4e-11 73.9 78 47.4
HPP92_025177 Vanilla planifolia HOM05D001418 ORTHO05D003753 1.4e-11 73.9 78 47.4
CANSAT01G1075 Cannabis sativa HOM05D001418 ORTHO05D003753 2.4e-11 73.2 72 44.4
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 2.4e-11 73.2 197 31.0
Phvul.002G274200 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 2.4e-11 73.2 87 43.7
Psat7g044600 Pisum sativum HOM05D001418 ORTHO05D003753 2.4e-11 73.2 72 43.1
THA.LOC104804402 Tarenaya hassleriana HOM05D001418 ORTHO05D003753 2.4e-11 73.2 187 34.2
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 3.2e-11 72.8 175 35.4
Glyma.04G210600 Glycine max HOM05D001418 ORTHO05D003753 4.1e-11 72.4 82 41.5
TWI34G0987 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 4.1e-11 72.4 186 30.6
Haze_18313 Corylus avellana HOM05D001418 ORTHO05D003753 5.4e-11 72.0 72 44.4
AT4G30770 Arabidopsis thaliana HOM05D001418 ORTHO05D003753 7.0e-11 71.6 186 33.3
Haze_25311 Corylus avellana HOM05D001418 ORTHO05D003753 7.0e-11 71.6 75 42.7
Glyma.08G001800 Glycine max HOM05D001418 ORTHO05D003753 7.0e-11 71.6 85 42.4
Cfa021634 Carpinus fangiana HOM05D001418 ORTHO05D003753 9.2e-11 71.2 75 44.0
Cfa021635 Carpinus fangiana HOM05D001418 ORTHO05D003753 9.2e-11 71.2 75 44.0
Nn3g19224 Nelumbo nucifera HOM05D007511 ORTHO05D003753 1.6e-10 70.5 174 30.5
arahy.Tifrunner.gnm1.ann1.QAD3X4 Arachis hypogaea HOM05D001418 ORTHO05D003753 2.0e-10 70.1 68 44.1
BcaC09g51866 Brassica carinata HOM05D001418 ORTHO05D003753 3.5e-10 69.3 186 33.3
BcaNung04827 Brassica carinata HOM05D001418 ORTHO05D003753 3.5e-10 69.3 187 33.7
C01p08160 Brassica napus HOM05D001418 ORTHO05D003753 3.5e-10 69.3 186 33.3
BolC1t00803H Brassica oleracea HOM05D001418 ORTHO05D003753 3.5e-10 69.3 186 33.3
CiPaw.03G118600 Carya illinoinensis HOM05D001418 ORTHO05D003753 3.5e-10 69.3 193 35.2
A01p07400 Brassica napus HOM05D001418 ORTHO05D003753 4.6e-10 68.9 186 33.3
BraA01t00689Z Brassica rapa HOM05D001418 ORTHO05D003753 4.6e-10 68.9 186 33.3
Thhalv10027257m.g Eutrema salsugineum HOM05D001418 ORTHO05D003753 4.6e-10 68.9 186 32.3
Lj4g0007966 Lotus japonicus HOM05D001418 ORTHO05D003753 4.6e-10 68.9 186 32.8
Prupe.4G274100 Prunus persica HOM05D001418 ORTHO05D003753 4.6e-10 68.9 181 33.7
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 6.0e-10 68.6 68 47.1
Phvul.009G155100 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 7.8e-10 68.2 71 40.8
Medtr8g011160 Medicago truncatula HOM05D007511 ORTHO05D003753 1.0e-09 67.8 64 46.9
TWI60G1247 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 1.3e-09 67.4 188 27.7
AL7G21370 Arabidopsis lyrata HOM05D001418 ORTHO05D003753 1.7e-09 67.0 186 31.2
Ca_23172_v3 Cicer arietinum L. HOM05D007511 ORTHO05D003753 1.7e-09 67.0 152 30.3
FvH4_1g24680 Fragaria vesca HOM05D001418 ORTHO05D003753 2.3e-09 66.6 67 46.3
FAN19G0125 Fragaria x ananassa HOM05D001418 ORTHO05D003753 2.3e-09 66.6 67 46.3
Psat0s409g0080 Pisum sativum HOM05D007511 ORTHO05D003753 2.3e-09 66.6 64 43.8
AUR62034848 Chenopodium quinoa HOM05D001418 ORTHO05D003753 3.0e-09 66.2 178 28.1
Manes.08G158000 Manihot esculenta HOM05D007511 ORTHO05D003753 3.0e-09 66.2 66 42.4
CARHR238610 Cardamine hirsuta HOM05D001418 ORTHO05D003753 3.9e-09 65.9 186 31.2
PGR004G1271 Punica granatum HOM05D007511 ORTHO05D003753 3.9e-09 65.9 70 47.1
CANSAT35G2046 Cannabis sativa HOM05D007511 ORTHO05D003753 5.0e-09 65.5 62 50.0
VMungo0251G3540 Vigna mungo HOM05D001418 ORTHO05D003753 5.0e-09 65.5 76 42.1
Gohir.D11G061300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 6.6e-09 65.1 75 38.7
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 6.6e-09 65.1 64 42.2
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 8.6e-09 64.7 64 42.2
QL10p041669 Quercus lobata HOM05D001418 ORTHO05D003753 8.6e-09 64.7 203 34.0
AUR62029588 Chenopodium quinoa HOM05D001418 ORTHO05D003753 1.1e-08 64.3 174 29.3
Gorai.007G066200 Gossypium raimondii HOM05D001418 ORTHO05D003753 1.5e-08 63.9 75 37.3
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 1.9e-08 63.5 64 40.6
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 2.5e-08 63.2 182 28.6
BcaNung02743 Brassica carinata HOM05D001418 ORTHO05D003753 3.3e-08 62.8 186 30.6
A03p60290 Brassica napus HOM05D001418 ORTHO05D003753 3.3e-08 62.8 186 30.6
C07p58200 Brassica napus HOM05D001418 ORTHO05D003753 3.3e-08 62.8 186 30.6
BraA03t15071Z Brassica rapa HOM05D001418 ORTHO05D003753 3.3e-08 62.8 186 30.6
FAN26G3393 Fragaria x ananassa HOM05D001418 ORTHO05D003753 3.3e-08 62.8 61 45.9
QL10p041870 Quercus lobata HOM05D001418 ORTHO05D003753 3.3e-08 62.8 204 33.8
Sabra19G0054300 Salix brachista HOM05D007511 ORTHO05D003753 3.3e-08 62.8 66 40.9
BolC7t46274H Brassica oleracea HOM05D001418 ORTHO05D002038 4.3e-08 62.4 185 30.3
Carub.0007s0979 Capsella rubella HOM05D001418 ORTHO05D003753 4.3e-08 62.4 186 36.0
CDE02G0326 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 4.3e-08 62.4 67 37.3
Duzib177G0499 Durio zibethinus HOM05D007511 ORTHO05D003753 4.3e-08 62.4 191 28.3
Sp7g28640 Schrenkiella parvula HOM05D001418 ORTHO05D003753 4.3e-08 62.4 186 32.3
BcaNung01562 Brassica carinata HOM05D001418 ORTHO05D003753 5.6e-08 62.0 186 30.6
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 5.6e-08 62.0 197 29.9
Gohir.D09G004300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 5.6e-08 62.0 73 37.0
Gorai.006G005900 Gossypium raimondii HOM05D001418 ORTHO05D003753 5.6e-08 62.0 73 37.0
Hma1.2p1_0915F.1_g236420 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 5.6e-08 62.0 64 50.0
Gohir.A09G005000 Gossypium hirsutum HOM05D001418 ORTHO05D003753 7.3e-08 61.6 182 28.0
Ah.06g190930 Amaranthus hybridus HOM05D001418 ORTHO05D003753 9.5e-08 61.2 223 26.9
Gohir.D10G108200 Gossypium hirsutum HOM05D001418 ORTHO05D003753 9.5e-08 61.2 192 27.1
Lalb_Chr07g0194541 Lupinus albus HOM05D007511 ORTHO05D003753 2.1e-07 60.1 62 46.8
Glyma.03G092200 Glycine max HOM05D007511 ORTHO05D003753 2.8e-07 59.7 62 46.8
Gorai.011G118700 Gossypium raimondii HOM05D001418 ORTHO05D003753 2.8e-07 59.7 186 26.9
Os12g0182000 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 2.8e-07 59.7 62 41.9
Potri.019G043701 Populus trichocarpa HOM05D007511 ORTHO05D003753 2.8e-07 59.7 66 36.4
Glyma.16G082300 Glycine max HOM05D007511 ORTHO05D003753 4.7e-07 58.9 62 45.2
Gohir.A11G057300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 4.7e-07 58.9 158 28.5
Zm00001eb112650 Zea mays HOM05D001418 ORTHO05D003753 4.7e-07 58.9 63 39.7
Atru.chr2.1724 Acer truncatum HOM05D007511 ORTHO05D003753 8.0e-07 58.2 176 38.1
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 8.0e-07 58.2 67 34.3
Psat4g207240 Pisum sativum HOM05D007511 ORTHO05D003753 8.0e-07 58.2 148 31.1
THA.LOC104804459 Tarenaya hassleriana HOM05D001418 ORTHO05D003753 8.0e-07 58.2 186 31.7
TPR.G24583 Trifolium pratense HOM05D007511 ORTHO05D003753 8.0e-07 58.2 135 34.1
AUR62006850 Chenopodium quinoa HOM05D001418 ORTHO05D003753 1.1e-06 57.8 71 36.6
Eucgr.D00980 Eucalyptus grandis HOM05D007511 ORTHO05D003753 1.4e-06 57.4 186 29.6
Gohir.A10G157222 Gossypium hirsutum HOM05D001418 ORTHO05D003753 1.8e-06 57.0 186 26.9
CDE08G1405 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 2.3e-06 56.6 186 24.2
Zm00001eb202060 Zea mays HOM05D001418 ORTHO05D003753 3.1e-06 56.2 63 38.1
AUR62000505 Chenopodium quinoa HOM05D001418 ORTHO05D003753 4.0e-06 55.8 213 25.4
Os11g0195700 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 5.2e-06 55.5 64 39.1
Lsat_1_v5_gn_7_35641 Lactuca sativa HOM05D007511 ORTHO05D003753 6.8e-06 55.1 63 44.4
VMungo1309G0848 Vigna mungo HOM05D001418 ORTHO05D003753 6.8e-06 55.1 68 35.3
Sp6g26630 Schrenkiella parvula HOM05D007511 ORTHO05D003753 8.9e-06 54.7 159 27.7


User provided reference genes

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