Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 8.8e-122 440.3 217 100.0
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 8.8e-122 440.3 217 100.0
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.0e-114 416.8 217 93.1
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 1.2e-110 403.3 217 89.9
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 4.0e-106 388.3 213 85.4
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 6.8e-106 387.5 217 84.8
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 8.8e-106 387.1 215 86.0
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 3.4e-105 385.2 215 84.2
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 2.8e-104 382.1 213 85.4
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 1.4e-103 379.8 215 83.3
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 4.1e-103 378.3 215 83.3
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 9.1e-103 377.1 217 82.5
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 3.5e-102 375.2 215 84.2
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 7.7e-102 374.0 216 82.4
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 7.7e-102 374.0 216 83.8
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 1.3e-101 373.2 216 81.9
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 1.3e-101 373.2 215 80.9
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.7e-101 372.9 215 83.7
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 2.9e-101 372.1 216 82.4
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 3.8e-101 371.7 215 80.9
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 8.5e-101 370.5 215 80.9
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 3.2e-100 368.6 215 81.9
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 3.2e-100 368.6 212 81.1
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 7.2e-100 367.5 252 73.4
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 7.2e-100 367.5 252 73.4
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 7.2e-100 367.5 215 80.0
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 2.1e-99 365.9 223 79.4
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 4.7e-99 364.8 215 79.1
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 1.8e-98 362.8 234 77.8
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 1.8e-98 362.8 216 79.2
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 4.0e-98 361.7 211 80.6
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.2e-98 361.3 216 79.2
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 1.5e-97 359.8 241 74.3
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 7.5e-97 357.5 215 78.6
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 1.3e-96 356.7 215 78.6
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.8e-96 355.5 217 78.3
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 6.3e-96 354.4 215 78.1
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 6.3e-96 354.4 216 80.1
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 6.3e-96 354.4 217 77.9
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 8.3e-96 354.0 217 77.9
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 1.1e-95 353.6 216 75.5
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 2.4e-95 352.4 215 76.7
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 7.0e-95 350.9 212 75.5
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 9.2e-95 350.5 215 75.8
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.6e-94 349.7 215 74.4
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 1.6e-94 349.7 215 79.5
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 2.0e-94 349.4 216 76.4
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 2.0e-94 349.4 216 77.8
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 3.5e-94 348.6 215 80.9
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.0e-93 347.1 215 75.8
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.7e-93 346.3 215 75.3
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 2.3e-93 345.9 217 76.0
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 1.5e-92 343.2 215 74.9
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 4.3e-92 341.7 217 74.7
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 9.5e-92 340.5 215 74.0
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.8e-91 339.0 218 75.2
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 2.8e-91 339.0 213 74.6
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.0e-90 337.0 215 74.4
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 2.3e-90 335.9 216 75.5
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 5.2e-90 334.7 213 73.2
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 6.8e-90 334.3 215 72.1
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.5e-89 333.2 213 72.3
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 2.6e-89 332.4 215 71.2
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 7.5e-89 330.9 215 71.6
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 7.5e-89 330.9 215 71.6
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 7.5e-89 330.9 218 71.6
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 4.9e-88 328.2 213 72.3
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 4.9e-88 328.2 258 64.0
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 4.9e-88 328.2 219 69.9
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 6.4e-88 327.8 219 70.3
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 2.4e-87 325.9 215 69.8
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 2.4e-87 325.9 235 68.1
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 9.2e-87 323.9 215 70.2
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 3.5e-86 322.0 215 68.8
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 3.5e-86 322.0 219 69.9
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.9e-86 321.2 208 75.0
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.9e-86 321.2 213 68.5
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.0e-85 320.5 208 71.6
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.7e-85 319.7 219 69.4
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 1.7e-85 319.7 244 65.6
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.1e-84 317.0 215 67.4
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.5e-84 316.6 219 68.5
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 3.3e-84 315.5 194 75.3
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 4.3e-84 315.1 210 70.0
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 7.3e-84 314.3 215 67.0
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 7.3e-84 314.3 215 67.0
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 7.3e-84 314.3 215 67.0
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 9.5e-84 313.9 215 66.0
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 1.2e-83 313.5 210 69.5
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 1.6e-83 313.2 216 66.2
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 8.0e-83 310.8 219 67.6
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 3.1e-82 308.9 215 67.0
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 5.2e-82 308.1 216 64.8
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 1.2e-81 307.0 211 67.8
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 1.2e-81 307.0 217 65.9
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 3.2e-79 298.9 215 66.5
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 4.1e-79 298.5 215 64.7
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 4.1e-79 298.5 202 68.8
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 7.0e-79 297.7 201 72.6
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 7.3e-76 287.7 211 66.8
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 3.6e-75 285.4 160 85.6
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.1e-75 284.3 213 62.4
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-74 283.5 210 63.8
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 6.8e-74 281.2 225 56.4
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 2.9e-72 275.8 215 61.4
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 1.2e-70 270.4 219 55.7
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 3.5e-70 268.9 157 82.2
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 1.3e-69 266.9 214 54.7
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.9e-69 265.4 166 77.7
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 3.9e-69 265.4 159 79.9
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 3.9e-69 265.4 159 79.9
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.7e-67 258.5 210 59.5
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.1e-66 257.3 165 77.0
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.5e-65 253.4 186 69.4
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 2.6e-65 252.7 216 61.1
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 7.6e-65 251.1 141 84.4
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 4.9e-64 248.4 219 49.3
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.4e-64 247.7 185 63.2
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.4e-63 245.0 178 64.0
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-62 243.8 221 55.2
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.0e-61 239.2 136 83.1
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 6.6e-61 238.0 207 51.7
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.5e-60 236.1 214 54.2
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 7.3e-60 234.6 142 80.3
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.1e-59 231.1 169 64.5
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.7e-56 223.4 165 65.5
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 2.9e-56 222.6 211 51.7
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 3.2e-55 219.2 159 66.0
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 7.8e-54 214.5 211 49.3
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 2.3e-53 213.0 217 44.2
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 7.3e-52 208.0 171 58.5
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 3.6e-51 205.7 191 50.3
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 2.4e-50 203.0 149 67.8
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 4.5e-49 198.7 120 80.0
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.8e-49 198.4 143 64.3
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.2e-48 196.4 203 49.8
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.2e-46 190.7 218 39.0
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 6.0e-46 188.3 133 67.7
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.0e-46 188.3 161 56.5
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 1.4e-42 177.2 117 75.2
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 1.5e-41 173.7 163 53.4
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.4e-41 172.6 121 66.1
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.3e-39 164.5 133 59.4
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 2.1e-38 163.3 123 63.4
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-36 157.5 131 56.5
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.8e-35 152.9 117 62.4
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.9e-31 140.2 101 65.3
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-23 114.0 143 44.1
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 5.5e-23 112.1 91 61.5
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 2.3e-21 106.7 73 71.2
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 5.1e-21 105.5 74 66.2
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 4.8e-19 99.0 52 78.8
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.1e-18 97.8 71 60.6
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 9.1e-18 94.7 66 60.6
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 1.1e-15 87.8 52 67.3
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 7.9e-14 81.6 66 59.1
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-12 77.8 64 59.4
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 1.3e-11 74.3 97 44.3
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 6.3e-11 72.0 55 65.5
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 6.3e-11 72.0 55 65.5
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 1.1e-10 71.2 54 66.7


User provided reference genes

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