Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0151 Trochodendron aralioides HOM05D002603 ORTHO05D002907 1.3e-64 249.6 127 100.0
TAR625G1189 Trochodendron aralioides HOM05D002603 ORTHO05D002907 1.4e-42 176.4 110 85.5
Prupe.7G034500 Prunus persica HOM05D002603 ORTHO05D002907 3.4e-33 145.2 110 67.3
Atru.chr1.1397 Acer truncatum HOM05D002603 ORTHO05D002907 1.4e-31 139.8 110 65.5
GSVIVG01025743001 Vitis vinifera HOM05D002603 ORTHO05D002907 3.2e-31 138.7 110 66.4
Dinv03205 Davidia involucrata HOM05D002603 ORTHO05D002907 9.3e-31 137.1 110 69.1
Duzib128G0797 Durio zibethinus HOM05D002603 ORTHO05D002907 7.9e-30 134.0 107 63.6
Migut.J01643 Erythranthe guttata HOM05D002603 ORTHO05D002907 7.9e-30 134.0 110 67.3
Oeu005204.2 Olea europaea HOM05D002603 ORTHO05D002907 1.0e-29 133.7 110 63.6
Actinidia17958 Actinidia chinensis HOM05D002603 ORTHO05D002907 1.3e-29 133.3 114 62.3
Ciclev10012015m.g Citrus clementina HOM05D002603 ORTHO05D002907 3.0e-29 132.1 111 62.2
Cc06_g19640 Coffea canephora HOM05D002603 ORTHO05D002907 5.1e-29 131.3 114 61.4
Haze_20237 Corylus avellana HOM05D002603 ORTHO05D002907 6.7e-29 131.0 115 63.5
CiPaw.09G048800 Carya illinoinensis HOM05D002603 ORTHO05D002907 1.5e-28 129.8 115 60.9
MELO3C026602.2 Cucumis melo HOM05D002603 ORTHO05D002907 1.9e-28 129.4 110 60.0
Thecc.05G127600 Theobroma cacao HOM05D002603 ORTHO05D002907 3.3e-28 128.6 107 61.7
SalBow6G2761 Salvia bowleyana HOM05D002603 ORTHO05D002907 4.3e-28 128.3 110 62.7
SGA_v2.0_scaffold66G22265 Striga asiatica HOM05D004207 ORTHO05D002907 4.3e-28 128.3 110 61.8
CSS0025737 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 5.6e-28 127.9 114 61.4
Sed0008427 Sechium edule HOM05D002603 ORTHO05D002907 5.6e-28 127.9 110 59.1
CSS0034722 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 9.6e-28 127.1 114 60.5
Cfa019995 Carpinus fangiana HOM05D002603 ORTHO05D002907 9.6e-28 127.1 115 61.7
MD07G1116400 Malus domestica HOM05D002603 ORTHO05D002907 1.6e-27 126.3 114 61.4
MD12G1096300 Malus domestica HOM05D002603 ORTHO05D002907 1.6e-27 126.3 114 61.4
TWI74G0363 Tripterygium wilfordii HOM05D002603 ORTHO05D002907 1.6e-27 126.3 108 59.3
MSTRG.19795 Avicennia marina HOM05D002603 ORTHO05D002907 2.8e-27 125.6 114 60.5
CSS0017575 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 2.8e-27 125.6 114 59.6
Gohir.D11G322300 Gossypium hirsutum HOM05D002603 ORTHO05D002907 2.8e-27 125.6 108 59.3
Gorai.007G352400 Gossypium raimondii HOM05D002603 ORTHO05D002907 2.8e-27 125.6 108 59.3
MD14G1089400 Malus domestica HOM05D002603 ORTHO05D002907 3.7e-27 125.2 110 61.8
CSS0000794 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 6.2e-27 124.4 114 59.6
CANSAT64G0741 Cannabis sativa HOM05D002603 ORTHO05D002907 6.2e-27 124.4 112 57.1
Rhsim03G0036700 Rhododendron simsii HOM05D002603 ORTHO05D002907 1.1e-26 123.6 114 56.1
PGR031G2792 Punica granatum HOM05D002603 ORTHO05D002907 1.4e-26 123.2 112 60.7
Nitab4.5_0004629g0060 Nicotiana tabacum HOM05D002603 ORTHO05D002907 1.8e-26 122.9 110 60.0
Peaxi162Scf00076g00319 Petunia axillaris HOM05D002603 ORTHO05D002907 1.8e-26 122.9 110 60.9
CsaV3_3G043000 Cucumis sativus L. HOM05D002603 ORTHO05D002907 2.4e-26 122.5 110 58.2
Eucgr.A02231 Eucalyptus grandis HOM05D002603 ORTHO05D002907 2.4e-26 122.5 113 54.9
Lalb_Chr22g0357531 Lupinus albus HOM05D002603 ORTHO05D002907 3.1e-26 122.1 114 57.0
vmacro07780 Vaccinium macrocarpon HOM05D002603 ORTHO05D002907 3.1e-26 122.1 110 59.1
Manes.09G003600 Manihot esculenta HOM05D002603 ORTHO05D002907 4.0e-26 121.7 106 57.5
MSTRG.10788 Avicennia marina HOM05D002603 ORTHO05D002907 5.3e-26 121.3 110 60.9
CSS0006853 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 5.3e-26 121.3 114 59.6
Hma1.2p1_0252F.1_g102820 Hydrangea macrophylla HOM05D002603 ORTHO05D002907 5.3e-26 121.3 110 58.2
unitig_699.g19524 Utricularia gibba HOM05D002603 ORTHO05D002907 6.9e-26 120.9 110 59.1
CAN.G8.30 Capsicum annuum HOM05D002603 ORTHO05D002907 3.4e-25 118.6 110 58.2
DCAR_009136 Daucus carota HOM05D002603 ORTHO05D002907 4.5e-25 118.2 110 59.1
Nitab4.5_0013137g0010 Nicotiana tabacum HOM05D002603 ORTHO05D002907 4.5e-25 118.2 110 58.2
Solyc12g021180.2 Solanum lycopersicum HOM05D002603 ORTHO05D002907 5.8e-25 117.9 110 57.3
QL07p011359 Quercus lobata HOM05D002603 ORTHO05D002907 7.6e-25 117.5 118 56.8
Sopen12g011090 Solanum pennellii HOM05D002603 ORTHO05D002907 7.6e-25 117.5 110 58.2
arahy.Tifrunner.gnm1.ann1.NB81DJ Arachis hypogaea HOM05D002603 ORTHO05D002907 1.3e-24 116.7 121 53.7
CSS0004855 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 1.3e-24 116.7 130 52.3
SGA_v2.0_scaffold69G23162 Striga asiatica HOM05D004207 ORTHO05D005188 1.3e-24 116.7 110 59.1
THA.LOC104823207 Tarenaya hassleriana HOM05D002603 ORTHO05D002907 1.7e-24 116.3 110 54.5
Lsat_1_v5_gn_5_156820 Lactuca sativa HOM05D002603 ORTHO05D002907 2.2e-24 115.9 111 58.6
arahy.Tifrunner.gnm1.ann1.K86MNX Arachis hypogaea HOM05D002603 ORTHO05D002907 2.9e-24 115.5 121 53.7
PSO384G0250 Papaver somniferum HOM05D002603 ORTHO05D002907 4.9e-24 114.8 110 56.4
MBI19_g14620_MAGBIO Magnolia biondii HOM05D002603 ORTHO05D002907 6.5e-24 114.4 110 56.4
MBI19_g45267_MAGBIO Magnolia biondii HOM05D002603 ORTHO05D002907 6.5e-24 114.4 110 56.4
PSO339G5736 Papaver somniferum HOM05D002603 ORTHO05D002907 6.5e-24 114.4 110 55.5
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 8.4e-24 114.0 114 56.1
Phvul.001G121600 Phaseolus vulgaris HOM05D002603 ORTHO05D002907 8.4e-24 114.0 116 56.9
VMungo1383G3140 Vigna mungo HOM05D002603 ORTHO05D002907 8.4e-24 114.0 116 57.8
AUR62018358 Chenopodium quinoa HOM05D002603 ORTHO05D002907 1.4e-23 113.2 110 52.7
HanXRQChr01g0008101 Helianthus annuus HOM05D002603 ORTHO05D002907 1.4e-23 113.2 110 56.4
Sabra16G0038000 Salix brachista HOM05D002603 ORTHO05D002907 1.4e-23 113.2 110 53.6
AUR62030304 Chenopodium quinoa HOM05D002603 ORTHO05D002907 1.9e-23 112.8 110 52.7
RcHm_v2.0_Chr1g0337801 Rosa chinensis HOM05D002603 ORTHO05D002907 1.9e-23 112.8 110 59.1
HPP92_015454 Vanilla planifolia HOM05D002603 ORTHO05D002907 1.9e-23 112.8 113 54.0
Glyma.19G129300 Glycine max HOM05D002603 ORTHO05D002907 2.5e-23 112.5 111 55.9
Lalb_Chr24g0400411 Lupinus albus HOM05D002603 ORTHO05D002907 2.5e-23 112.5 114 53.5
Potri.016G035700 Populus trichocarpa HOM05D002603 ORTHO05D002907 2.5e-23 112.5 110 52.7
Potri.006G040300 Populus trichocarpa HOM05D002603 ORTHO05D002907 3.2e-23 112.1 110 52.7
RcHm_v2.0_Chr1g0337741 Rosa chinensis HOM05D002603 ORTHO05D002907 3.2e-23 112.1 110 58.2
EL10Ac3g07250 Beta vulgaris HOM05D002603 ORTHO05D002907 4.2e-23 111.7 110 52.7
Glyma.03G126200 Glycine max HOM05D002603 ORTHO05D002907 4.2e-23 111.7 111 55.9
Sabra06G0027200 Salix brachista HOM05D002603 ORTHO05D002907 4.2e-23 111.7 110 53.6
CDE08G1322 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 5.5e-23 111.3 110 56.4
Cpa.g.sc92.80 Carica papaya HOM05D002603 ORTHO05D002907 2.1e-22 109.4 100 59.0
RcHm_v2.0_Chr0c29g0501071 Rosa chinensis HOM05D002603 ORTHO05D002907 3.5e-22 108.6 110 56.4
RcHm_v2.0_Chr1g0337841 Rosa chinensis HOM05D002603 ORTHO05D002907 3.5e-22 108.6 110 56.4
Ca_08382_v3 Cicer arietinum L. HOM05D002603 ORTHO05D002907 7.9e-22 107.5 118 51.7
Sc25g0005460 Simmondsia chinensis HOM05D002603 ORTHO05D002907 7.9e-22 107.5 110 52.7
FAN06G3043 Fragaria x ananassa HOM05D002603 ORTHO05D002907 1.3e-21 106.7 110 57.3
Lj1g0009963 Lotus japonicus HOM05D002603 ORTHO05D002907 1.3e-21 106.7 117 51.3
ECA248G3411 Erigeron canadensis HOM05D002603 ORTHO05D002907 1.8e-21 106.3 113 56.6
FvH4_7g07280 Fragaria vesca HOM05D002603 ORTHO05D002907 1.8e-21 106.3 110 53.6
Psat3g079800 Pisum sativum HOM05D002603 ORTHO05D002907 1.8e-21 106.3 117 51.3
FAN10G2006 Fragaria x ananassa HOM05D002603 ORTHO05D002907 3.9e-21 105.1 110 54.5
FAN03G1791 Fragaria x ananassa HOM05D002603 ORTHO05D002907 5.1e-21 104.8 114 53.5
Hund19086 Selenicereus undatus HOM05D002603 ORTHO05D002907 6.7e-21 104.4 112 50.9
FAN01G0401 Fragaria x ananassa HOM05D002603 ORTHO05D002907 1.6e-19 99.8 110 50.9
TPR.G16084 Trifolium pratense HOM05D002603 ORTHO05D002907 3.7e-19 98.6 117 47.9
Medtr7g089540 Medicago truncatula HOM05D002603 ORTHO05D002907 6.3e-19 97.8 119 47.9
Prupe.4G082800 Prunus persica HOM05D002603 ORTHO05D002907 2.9e-16 89.0 110 48.2
ATR0307G070 Amborella trichopoda HOM05D002603 ORTHO05D002907 1.1e-15 87.0 154 39.6
BraA09t41593Z Brassica rapa HOM05D002603 ORTHO05D002907 1.9e-12 76.3 105 41.0
A09p62310 Brassica napus HOM05D002603 ORTHO05D002907 2.5e-12 75.9 105 41.0
BcaC07g41585 Brassica carinata HOM05D002603 ORTHO05D002907 3.3e-12 75.5 105 40.0
C08p45870 Brassica napus HOM05D002603 ORTHO05D002907 3.3e-12 75.5 105 40.0
BolC8t52139H Brassica oleracea HOM05D002603 ORTHO05D002907 3.3e-12 75.5 105 40.0
AL3G34390 Arabidopsis lyrata HOM05D002603 ORTHO05D002907 7.4e-12 74.3 103 40.8
Zm00001eb093380 Zea mays HOM05D002603 ORTHO05D002907 4.8e-11 71.6 112 39.3
ECA233G2731 Erigeron canadensis HOM05D002603 ORTHO05D002907 6.3e-11 71.2 114 41.2
Carub.0006s0316 Capsella rubella HOM05D002603 ORTHO05D002907 2.4e-10 69.3 108 41.7
Os11g0136800 Oryza sativa ssp. japonica HOM05D002603 ORTHO05D002907 3.1e-10 68.9 113 39.8
Os12g0133700 Oryza sativa ssp. japonica HOM05D002603 ORTHO05D002907 1.5e-09 66.6 113 38.1
Prupe.7G034700 Prunus persica HOM05D002603 ORTHO05D002907 1.0e-08 63.9 111 39.6
BcaB08g34381 Brassica carinata HOM05D002603 ORTHO05D002907 1.1e-07 60.5 103 35.0
ECA233G3050 Erigeron canadensis HOM05D002603 ORTHO05D002907 1.9e-07 59.7 114 36.0
Aa31LG8G12330 Aethionema arabicum HOM05D002603 ORTHO05D002907 6.1e-06 54.7 126 33.3


User provided reference genes

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