Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1009 Trochodendron aralioides HOM05D001360 ORTHO05D001231 1.1e-27 125.9 66 100.0
TAR623G1241 Trochodendron aralioides HOM05D001360 ORTHO05D001231 3.2e-27 124.4 66 98.5
TAR369G0700 Trochodendron aralioides HOM05D001360 ORTHO05D001231 1.7e-15 85.5 54 87.0
TAR633G2651 Trochodendron aralioides HOM05D001360 ORTHO05D001231 7.0e-14 80.1 55 81.8
CiPaw.01G293800 Carya illinoinensis HOM05D001360 ORTHO05D001231 2.3e-12 75.1 55 72.7
Nn2g11293 Nelumbo nucifera HOM05D001360 ORTHO05D001231 2.9e-12 74.7 54 77.8
CiPaw.01G293400 Carya illinoinensis HOM05D001360 ORTHO05D001231 3.9e-12 74.3 55 70.9
CDE02G0317 Ceratophyllum demersum HOM05D001360 ORTHO05D001231 3.9e-12 74.3 55 72.7
Lalb_Chr20g0116751 Lupinus albus HOM05D001360 ORTHO05D001231 3.9e-12 74.3 57 68.4
TPR.G38067 Trifolium pratense HOM05D001360 ORTHO05D001231 6.6e-12 73.6 57 66.7
Ca_17129_v3 Cicer arietinum L. HOM05D001360 ORTHO05D001231 1.5e-11 72.4 57 66.7
Dinv34452 Davidia involucrata HOM05D001360 ORTHO05D001231 4.3e-11 70.9 55 67.3
Lsat_1_v5_gn_2_117080 Lactuca sativa HOM05D001360 ORTHO05D001231 4.3e-11 70.9 55 65.5
Lj8C75T3 Lonicera japonica HOM05D001360 ORTHO05D001231 4.3e-11 70.9 55 67.3
Medtr3g069580 Medicago truncatula HOM05D001360 ORTHO05D001231 4.3e-11 70.9 57 68.4
Phvul.001G238400 Phaseolus vulgaris HOM05D001360 ORTHO05D001231 4.3e-11 70.9 55 67.3
VMungo1383G2175 Vigna mungo HOM05D001360 ORTHO05D001231 5.6e-11 70.5 55 69.1
MELO3C008255.2 Cucumis melo HOM05D001360 ORTHO05D001231 1.2e-10 69.3 55 65.5
CsaV3_6G001480 Cucumis sativus L. HOM05D001360 ORTHO05D001231 1.6e-10 68.9 52 69.2
Oeu016799.1 Olea europaea HOM05D001360 ORTHO05D001231 1.6e-10 68.9 55 69.1
PGR119G1765 Punica granatum HOM05D001360 ORTHO05D001231 1.6e-10 68.9 55 70.9
THA.LOC104826865 Tarenaya hassleriana HOM05D001360 ORTHO05D001231 1.6e-10 68.9 53 67.9
Cfa001397 Carpinus fangiana HOM05D001360 ORTHO05D001231 2.1e-10 68.6 55 67.3
CSS0022666 Camellia sinensis var. sinensis HOM05D001360 ORTHO05D001231 2.8e-10 68.2 55 67.3
CANSAT54G0739 Cannabis sativa HOM05D001360 ORTHO05D001231 2.8e-10 68.2 55 63.6
ClCG11G006510 Citrullus lanatus HOM05D000346 ORTHO05D000326 3.6e-10 67.8 52 67.3
Actinidia02900 Actinidia chinensis HOM05D001360 ORTHO05D001231 4.7e-10 67.4 55 63.6
CANSAT56G4295 Cannabis sativa HOM05D001360 ORTHO05D001231 4.7e-10 67.4 55 58.2
Dinv16277 Davidia involucrata HOM05D001360 ORTHO05D001231 4.7e-10 67.4 55 67.3
Duzib106G1431 Durio zibethinus HOM05D001360 ORTHO05D001231 4.7e-10 67.4 52 71.2
Sabra10G0150800 Salix brachista HOM05D001360 ORTHO05D001231 4.7e-10 67.4 55 65.5
Nn2g13530 Nelumbo nucifera HOM05D001360 ORTHO05D001231 6.1e-10 67.0 55 69.1
Potri.010G196100 Populus trichocarpa HOM05D001360 ORTHO05D001231 6.1e-10 67.0 55 61.8
ECA238G2034 Erigeron canadensis HOM05D001360 ORTHO05D001672 8.0e-10 66.6 54 66.7
Glyma.18G032200 Glycine max HOM05D001360 ORTHO05D001231 8.0e-10 66.6 55 65.5
DCAR_024853 Daucus carota HOM05D001360 ORTHO05D001231 1.0e-09 66.2 55 67.3
Hma1.2p1_0026F.1_g016630 Hydrangea macrophylla HOM05D001360 ORTHO05D001231 1.0e-09 66.2 55 65.5
Sed0008360 Sechium edule HOM05D001360 ORTHO05D001231 1.0e-09 66.2 52 65.4
Aa31LG11G6980 Aethionema arabicum HOM05D001360 ORTHO05D001231 1.4e-09 65.9 65 55.4
GSVIVG01016434001 Vitis vinifera HOM05D000346 ORTHO05D000326 1.4e-09 65.9 55 65.5
Cc02_g07210 Coffea canephora HOM05D000346 ORTHO05D000326 1.8e-09 65.5 55 65.5
FvH4_7g23601 Fragaria vesca HOM05D001360 ORTHO05D001231 2.3e-09 65.1 55 63.6
Manes.07G122700 Manihot esculenta HOM05D001360 ORTHO05D001231 2.3e-09 65.1 52 71.2
Prupe.2G242900 Prunus persica HOM05D001360 ORTHO05D001231 2.3e-09 65.1 55 61.8
TWI15G0390 Tripterygium wilfordii HOM05D001360 ORTHO05D001231 2.3e-09 65.1 54 66.7
vmacro07014 Vaccinium macrocarpon HOM05D001360 ORTHO05D001231 2.3e-09 65.1 55 67.3
arahy.Tifrunner.gnm1.ann1.H8QPA0 Arachis hypogaea HOM05D000346 ORTHO05D000326 3.1e-09 64.7 54 63.0
Gohir.A10G226100 Gossypium hirsutum HOM05D001360 ORTHO05D001231 3.1e-09 64.7 52 69.2
Gohir.D10G238400 Gossypium hirsutum HOM05D001360 ORTHO05D001231 3.1e-09 64.7 52 69.2
Gorai.011G274200 Gossypium raimondii HOM05D001360 ORTHO05D001231 3.1e-09 64.7 52 69.2
Lj6g0026388 Lotus japonicus HOM05D001360 ORTHO05D001231 3.1e-09 64.7 57 64.9
Nitab4.5_0002822g0040 Nicotiana tabacum HOM05D001360 ORTHO05D001231 3.1e-09 64.7 55 60.0
Nitab4.5_0008180g0030 Nicotiana tabacum HOM05D001360 ORTHO05D001231 3.1e-09 64.7 55 60.0
Rhsim03G0137800 Rhododendron simsii HOM05D001360 ORTHO05D001231 3.1e-09 64.7 55 65.5
Migut.F00733 Erythranthe guttata HOM05D001360 ORTHO05D001231 5.2e-09 63.9 59 61.0
Manes.02G126450 Manihot esculenta HOM05D001360 ORTHO05D001231 5.2e-09 63.9 55 65.5
RcHm_v2.0_Chr1g0368851 Rosa chinensis HOM05D001360 ORTHO05D001231 5.2e-09 63.9 55 67.3
TWI31G0477 Tripterygium wilfordii HOM05D001360 ORTHO05D001231 5.2e-09 63.9 55 63.6
CiPaw.13G087100 Carya illinoinensis HOM05D001360 ORTHO05D001231 8.9e-09 63.2 55 65.5
SEGI_09864 Sequoiadendron giganteum HOM05D001360 ORTHO05D001231 1.2e-08 62.8 56 58.9
Eucgr.G03001 Eucalyptus grandis HOM05D001360 ORTHO05D001231 1.5e-08 62.4 55 61.8
Eucgr.G03003 Eucalyptus grandis HOM05D001360 ORTHO05D001231 1.5e-08 62.4 55 63.6
HanXRQChr07g0202021 Helianthus annuus HOM05D001360 ORTHO05D001231 1.5e-08 62.4 57 63.2
MBI05_g02672_MAGBIO Magnolia biondii HOM05D001360 ORTHO05D001231 1.5e-08 62.4 53 60.4
MBI15_g31905_MAGBIO Magnolia biondii HOM05D001360 ORTHO05D001231 1.5e-08 62.4 53 62.3
Phvul.011G060900 Phaseolus vulgaris HOM05D001360 ORTHO05D001231 1.5e-08 62.4 55 61.8
VMungo1127G0840 Vigna mungo HOM05D001360 ORTHO05D001231 1.5e-08 62.4 55 61.8
Ah.16g102780 Amaranthus hybridus HOM05D001360 ORTHO05D001231 2.0e-08 62.0 54 59.3
Ca_20609_v3 Cicer arietinum L. HOM05D001360 ORTHO05D001231 2.0e-08 62.0 52 67.3
Ca_29563_v3 Cicer arietinum L. HOM05D001360 ORTHO05D001231 2.0e-08 62.0 52 67.3
FvH4_3g37210 Fragaria vesca HOM05D001360 ORTHO05D001231 2.0e-08 62.0 55 65.5
FAN01G2180 Fragaria x ananassa HOM05D000346 ORTHO05D000326 2.0e-08 62.0 55 61.8
FAN10G1779 Fragaria x ananassa HOM05D000346 ORTHO05D000326 2.0e-08 62.0 55 61.8
FAN11G3100 Fragaria x ananassa HOM05D001360 ORTHO05D001231 2.0e-08 62.0 55 65.5
FAN21G2568 Fragaria x ananassa HOM05D001360 ORTHO05D001231 2.0e-08 62.0 55 65.5
FAN25G2337 Fragaria x ananassa HOM05D001360 ORTHO05D001231 2.0e-08 62.0 55 65.5
RcHm_v2.0_Chr5g0066951 Rosa chinensis HOM05D001360 ORTHO05D001231 2.0e-08 62.0 55 65.5
Thecc.10G031000 Theobroma cacao HOM05D001360 ORTHO05D001231 2.0e-08 62.0 52 67.3
COL.COLO4_25571 Corchorus olitorius HOM05D001360 ORTHO05D001231 2.6e-08 61.6 52 63.5
Haze_24206 Corylus avellana HOM05D001360 ORTHO05D001231 2.6e-08 61.6 53 66.0
QL01p028221 Quercus lobata HOM05D001360 ORTHO05D001231 2.6e-08 61.6 55 61.8
QL08p062058 Quercus lobata HOM05D001360 ORTHO05D001231 2.6e-08 61.6 56 66.1
Lj3g0006032 Lotus japonicus HOM05D001360 ORTHO05D001231 3.4e-08 61.2 52 65.4
AL6G15880 Arabidopsis lyrata HOM05D001360 ORTHO05D001231 4.4e-08 60.8 54 61.1
FAN16G1210 Fragaria x ananassa HOM05D001360 ORTHO05D001231 4.4e-08 60.8 55 65.5
MD01G1141800 Malus domestica HOM05D001360 ORTHO05D001231 4.4e-08 60.8 55 61.8
MD11G1091000 Malus domestica HOM05D001360 ORTHO05D001231 4.4e-08 60.8 55 63.6
SalBow5G3447 Salvia bowleyana HOM05D000346 ORTHO05D000326 4.4e-08 60.8 57 63.2
Carub.0006s0483 Capsella rubella HOM05D001360 ORTHO05D001231 5.8e-08 60.5 54 61.1
Glyma.11G135000 Glycine max HOM05D001360 ORTHO05D001231 5.8e-08 60.5 55 60.0
Aqoxy1G00793 Aquilegia oxysepala HOM05D001360 ORTHO05D001231 7.5e-08 60.1 55 60.0
FAN03G2360 Fragaria x ananassa HOM05D001360 ORTHO05D001231 7.5e-08 60.1 55 60.0
Medtr4g064923 Medicago truncatula HOM05D001360 ORTHO05D001231 7.5e-08 60.1 54 63.0
PGSC0003DMG400027138 Solanum tuberosum HOM05D001360 ORTHO05D001231 7.5e-08 60.1 55 60.0
AT5G05950 Arabidopsis thaliana HOM05D001360 ORTHO05D001231 9.8e-08 59.7 54 61.1
QL08p062041 Quercus lobata HOM05D001360 ORTHO05D001231 9.8e-08 59.7 56 64.3
CAN.G1184.10 Capsicum annuum HOM05D001360 ORTHO05D001231 1.3e-07 59.3 55 60.0
CARHR207270 Cardamine hirsuta HOM05D001360 ORTHO05D001231 1.3e-07 59.3 54 59.3
Thhalv10014825m.g Eutrema salsugineum HOM05D001360 ORTHO05D001231 1.3e-07 59.3 54 59.3
Sabra09G0027400 Salix brachista HOM05D002124 ORTHO05D009549 1.3e-07 59.3 54 59.3
A10p30410 Brassica napus HOM05D001360 ORTHO05D001231 1.7e-07 58.9 54 59.3
BraA10t45080Z Brassica rapa HOM05D001360 ORTHO05D001231 1.7e-07 58.9 54 59.3
Eucgr.G02999 Eucalyptus grandis HOM05D001360 ORTHO05D001231 1.7e-07 58.9 52 65.4
Gohir.A07G101400 Gossypium hirsutum HOM05D001360 ORTHO05D001231 1.7e-07 58.9 55 63.6
Gohir.D07G105400 Gossypium hirsutum HOM05D001360 ORTHO05D001231 1.7e-07 58.9 55 63.6
Gorai.001G113500 Gossypium raimondii HOM05D001360 ORTHO05D001231 1.7e-07 58.9 55 63.6
Lalb_Chr19g0138021 Lupinus albus HOM05D001360 ORTHO05D001231 1.7e-07 58.9 55 58.2
Manes.10G021100 Manihot esculenta HOM05D001360 ORTHO05D001231 1.7e-07 58.9 52 65.4
Sopen05g031510 Solanum pennellii HOM05D001360 ORTHO05D001231 1.7e-07 58.9 55 58.2
Dinv17067 Davidia involucrata HOM05D002124 ORTHO05D009549 2.2e-07 58.5 54 63.0
Dinv43011 Davidia involucrata HOM05D002124 ORTHO05D009549 2.2e-07 58.5 54 63.0
Dinv43086 Davidia involucrata HOM05D002124 ORTHO05D009549 2.2e-07 58.5 54 63.0
Prupe.6G067200 Prunus persica HOM05D001360 ORTHO05D001231 2.2e-07 58.5 55 61.8
BcaC06g32305 Brassica carinata HOM05D001360 ORTHO05D001231 2.9e-07 58.2 54 59.3
C09p70850 Brassica napus HOM05D001360 ORTHO05D001231 2.9e-07 58.2 54 59.3
BolC9t59844H Brassica oleracea HOM05D001360 ORTHO05D001231 2.9e-07 58.2 54 59.3
Glyma.11G135200 Glycine max HOM05D001360 ORTHO05D001231 2.9e-07 58.2 55 58.2
SGA_v2.0_scaffold221G42706 Striga asiatica HOM05D001360 ORTHO05D001231 2.9e-07 58.2 57 59.6
TPR.G23601 Trifolium pratense HOM05D001360 ORTHO05D001231 2.9e-07 58.2 52 63.5
DCAR_007416 Daucus carota HOM05D001360 ORTHO05D001231 3.7e-07 57.8 55 61.8
PGR142G4181 Punica granatum HOM05D001360 ORTHO05D001231 3.7e-07 57.8 55 58.2
Zm00001eb094910 Zea mays HOM05D001360 ORTHO05D001231 3.7e-07 57.8 56 60.7
Duzib170G1172 Durio zibethinus HOM05D001360 ORTHO05D001231 4.9e-07 57.4 55 63.6
Psat7g211280 Pisum sativum HOM05D001360 ORTHO05D001231 4.9e-07 57.4 52 63.5
Thecc.09G312300 Theobroma cacao HOM05D001360 ORTHO05D001231 4.9e-07 57.4 55 61.8
AUR62001722 Chenopodium quinoa HOM05D001360 ORTHO05D001231 6.4e-07 57.0 55 56.4
Potri.009G038500 Populus trichocarpa HOM05D001360 ORTHO05D001231 8.3e-07 56.6 55 58.2
Aqoxy2G00516 Aquilegia oxysepala HOM05D001360 ORTHO05D001231 1.1e-06 56.2 55 56.4
MSTRG.24411 Avicennia marina HOM05D001360 ORTHO05D001231 1.1e-06 56.2 56 57.1
Aqoxy1G00794 Aquilegia oxysepala HOM05D001360 ORTHO05D001231 1.4e-06 55.8 55 58.2
Sp6g36950 Schrenkiella parvula HOM05D001360 ORTHO05D001231 1.4e-06 55.8 54 57.4
CSS0025193 Camellia sinensis var. sinensis HOM05D002124 ORTHO05D009549 1.9e-06 55.5 53 62.3
CSS0043692 Camellia sinensis var. sinensis HOM05D002124 ORTHO05D009549 1.9e-06 55.5 53 62.3
Os07g0240400 Oryza sativa ssp. japonica HOM05D001360 ORTHO05D001231 1.9e-06 55.5 56 58.9
Cpa.g.sc81.52 Carica papaya HOM05D001360 ORTHO05D001231 3.2e-06 54.7 52 61.5
MD03G1083000 Malus domestica HOM05D002124 ORTHO05D009549 3.2e-06 54.7 55 58.2
BcaNung07342 Brassica carinata HOM05D001360 ORTHO05D001231 4.1e-06 54.3 54 55.6
Rhsim13G0054500 Rhododendron simsii HOM05D001360 ORTHO05D001231 4.1e-06 54.3 52 57.7
arahy.Tifrunner.gnm1.ann1.AE4U2C Arachis hypogaea HOM05D001360 ORTHO05D001231 5.4e-06 53.9 56 58.9
arahy.Tifrunner.gnm1.ann1.L9YBM7 Arachis hypogaea HOM05D001360 ORTHO05D001231 5.4e-06 53.9 56 58.9
Ciclev10033990m.g Citrus clementina HOM05D001360 ORTHO05D001231 5.4e-06 53.9 54 61.1
Hma1.2p1_0274F.1_g110420 Hydrangea macrophylla HOM05D001360 ORTHO05D001231 5.4e-06 53.9 54 57.4
Lsat_1_v5_gn_5_169921 Lactuca sativa HOM05D001360 ORTHO05D001231 5.4e-06 53.9 55 58.2
A03p35290 Brassica napus HOM05D001360 ORTHO05D001231 7.0e-06 53.5 52 57.7
BraA03t12707Z Brassica rapa HOM05D001360 ORTHO05D001231 7.0e-06 53.5 52 57.7
Atru.chr3.4031 Acer truncatum HOM05D001360 ORTHO05D001231 9.2e-06 53.1 55 54.5
Thhalv10010731m.g Eutrema salsugineum HOM05D001360 ORTHO05D001231 9.2e-06 53.1 56 60.7
PSO384G2648 Papaver somniferum HOM05D001360 ORTHO05D001231 9.2e-06 53.1 56 58.9


User provided reference genes

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