Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 5.3e-84 314.3 159 100.0
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.9e-79 298.1 156 94.2
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 2.0e-78 295.8 156 94.2
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 4.5e-75 284.6 156 89.1
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.3e-74 283.1 159 88.1
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.2e-74 282.3 155 88.4
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.9e-74 282.0 154 89.0
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.9e-74 282.0 154 89.0
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.1e-73 280.0 155 89.0
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 1.1e-73 280.0 158 84.8
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 5.5e-73 277.7 156 87.8
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 5.5e-73 277.7 156 86.5
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 1.6e-72 276.2 157 84.1
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.7e-72 275.4 155 87.7
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 3.6e-72 275.0 157 84.7
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 3.6e-72 275.0 157 84.7
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 3.6e-72 275.0 158 83.5
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 8.0e-72 273.9 154 85.7
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 8.0e-72 273.9 156 85.9
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 1.8e-71 272.7 155 85.8
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 2.3e-71 272.3 156 84.6
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 2.3e-71 272.3 157 85.4
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 2.3e-71 272.3 157 86.0
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 6.8e-71 270.8 159 81.8
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 6.8e-71 270.8 157 82.8
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 1.2e-70 270.0 154 85.1
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 1.5e-70 269.6 154 84.4
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 2.6e-70 268.9 156 84.6
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 3.4e-70 268.5 157 82.8
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 4.4e-70 268.1 154 83.8
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 7.5e-70 267.3 159 81.1
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 1.7e-69 266.2 156 83.3
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 1.7e-69 266.2 156 83.3
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.2e-69 265.8 158 82.3
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 8.3e-69 263.8 156 83.3
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 8.3e-69 263.8 154 84.4
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 1.1e-68 263.5 156 82.7
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-68 263.5 156 82.7
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-68 263.5 156 82.7
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-68 263.5 156 82.7
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-68 263.5 156 82.7
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-68 263.5 156 82.7
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 1.8e-68 262.7 155 83.2
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 2.4e-68 262.3 157 78.3
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 5.4e-68 261.2 157 80.9
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 7.0e-68 260.8 154 82.5
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 1.6e-67 259.6 156 80.1
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 2.7e-67 258.8 158 79.1
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 2.7e-67 258.8 157 80.3
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 3.5e-67 258.5 155 80.6
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 3.5e-67 258.5 154 81.8
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 3.5e-67 258.5 157 80.3
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 4.5e-67 258.1 140 90.7
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 4.5e-67 258.1 156 80.8
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 7.7e-67 257.3 156 80.8
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 7.7e-67 257.3 154 80.5
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 7.7e-67 257.3 154 79.2
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 1.0e-66 256.9 153 80.4
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 1.7e-66 256.1 154 79.2
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 1.7e-66 256.1 157 78.3
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 2.9e-66 255.4 156 78.2
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 3.8e-66 255.0 157 79.6
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 5.0e-66 254.6 156 77.6
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 6.5e-66 254.2 159 75.5
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 6.5e-66 254.2 153 79.1
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.1e-65 253.4 154 78.6
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 1.1e-65 253.4 154 81.2
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.1e-65 253.4 154 78.6
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.5e-65 253.1 154 78.6
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.5e-65 253.1 158 77.2
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 1.9e-65 252.7 153 79.1
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 1.9e-65 252.7 154 81.2
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 2.5e-65 252.3 154 79.9
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 2.5e-65 252.3 157 79.0
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 3.2e-65 251.9 156 80.1
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 4.2e-65 251.5 156 78.8
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 5.5e-65 251.1 159 76.7
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 7.2e-65 250.8 151 79.5
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 9.4e-65 250.4 157 75.8
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 1.2e-64 250.0 153 81.0
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 1.6e-64 249.6 156 78.8
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 1.6e-64 249.6 154 81.2
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 2.7e-64 248.8 155 78.1
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 2.7e-64 248.8 155 78.1
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.7e-64 248.8 158 76.6
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 2.7e-64 248.8 155 78.7
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 3.6e-64 248.4 154 76.0
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 4.7e-64 248.1 154 76.0
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 6.1e-64 247.7 154 75.3
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 8.0e-64 247.3 154 74.7
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.0e-63 246.9 154 77.9
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 1.8e-63 246.1 158 79.1
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 1.8e-63 246.1 156 78.2
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 2.3e-63 245.7 154 74.7
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 8.8e-63 243.8 154 76.0
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 1.5e-62 243.0 154 76.0
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 1.5e-62 243.0 206 62.6
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 2.6e-62 242.3 154 73.4
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 9.8e-62 240.4 155 73.5
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 9.8e-62 240.4 155 73.5
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 9.8e-62 240.4 155 73.5
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 9.8e-62 240.4 155 73.5
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 9.8e-62 240.4 155 73.5
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 2.2e-61 239.2 150 74.0
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 8.3e-61 237.3 149 73.8
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 8.3e-61 237.3 150 73.3
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 8.3e-61 237.3 149 73.8
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 8.3e-61 237.3 149 73.8
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 1.8e-60 236.1 150 72.7
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 3.1e-60 235.3 141 80.9
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 7.0e-60 234.2 125 91.2
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 1.6e-59 233.0 155 70.3
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.9e-57 226.1 143 75.5
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 7.2e-57 224.2 135 80.0
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 2.1e-56 222.6 244 52.5
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 2.8e-56 222.2 156 68.6
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 1.4e-55 219.9 145 72.4
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 4.0e-55 218.4 123 86.2
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 3.4e-54 215.3 145 70.3
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 2.7e-51 205.7 208 51.9
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 5.9e-51 204.5 188 58.5
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.9e-50 201.8 155 65.8
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 8.6e-50 200.7 156 64.1
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 9.5e-49 197.2 300 42.3
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 8.9e-47 190.7 112 81.2
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 1.3e-45 186.8 156 59.6
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 2.9e-45 185.7 109 79.8
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 5.6e-41 171.4 139 64.0
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.9e-36 156.4 93 81.7
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 8.6e-34 147.5 95 74.7
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 8.6e-34 147.5 110 68.2
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 1.1e-33 147.1 154 50.0
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 7.3e-33 144.4 133 54.9
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.4e-31 140.2 149 48.3
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 3.1e-31 139.0 149 47.7
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 4.9e-29 131.7 130 52.3
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 2.4e-28 129.4 145 54.5
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 3.2e-28 129.0 152 44.7
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 9.2e-28 127.5 77 75.3
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 1.9e-25 119.8 146 44.5
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 2.5e-25 119.4 138 44.2
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.7e-24 115.2 80 71.2
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.7e-24 115.2 80 71.2
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 5.2e-23 111.7 65 80.0
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 6.8e-23 111.3 65 80.0
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 8.9e-23 110.9 84 63.1
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 9.9e-22 107.5 64 79.7
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 3.8e-21 105.5 138 42.8
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.4e-20 103.6 64 76.6
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 1.2e-19 100.5 101 56.4
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 2.1e-19 99.8 78 64.1
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 5.4e-12 75.1 146 39.0
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 1.3e-10 70.5 53 66.0
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 3.9e-10 68.9 53 64.2
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 5.3e-07 58.5 43 67.4
AT3G57900 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 9.9e-06 54.3 96 36.5


User provided reference genes

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