Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 4.9e-165 584.3 284 100.0
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 4.3e-137 491.5 269 85.9
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 4.8e-136 488.0 270 85.9
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 6.3e-136 487.6 270 86.3
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 2.5e-132 475.7 270 83.3
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 2.7e-131 472.2 270 81.1
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 1.4e-130 469.9 270 83.7
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 1.8e-130 469.5 269 82.5
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 1.8e-130 469.5 270 83.0
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 1.8e-130 469.5 270 83.3
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 3.9e-130 468.4 270 82.2
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 3.9e-130 468.4 269 82.2
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 3.9e-130 468.4 269 81.8
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 8.8e-130 467.2 270 81.5
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 1.1e-129 466.8 270 82.6
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 2.6e-129 465.7 269 81.4
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 2.6e-129 465.7 270 81.9
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 3.3e-129 465.3 288 79.2
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 5.7e-129 464.5 270 82.2
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 7.4e-129 464.2 269 81.0
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 9.7e-129 463.8 270 80.4
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 9.7e-129 463.8 270 82.2
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 1.3e-128 463.4 269 80.7
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 2.2e-128 462.6 270 82.2
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 2.8e-128 462.2 269 81.8
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 2.8e-128 462.2 270 81.9
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 1.4e-127 459.9 269 82.2
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 4.1e-127 458.4 270 81.5
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 4.1e-127 458.4 269 79.2
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 7.0e-127 457.6 270 80.4
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 9.1e-127 457.2 270 82.2
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 9.1e-127 457.2 270 80.0
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 3.5e-126 455.3 270 81.1
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 1.0e-125 453.8 270 80.0
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 1.0e-125 453.8 270 80.4
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 1.3e-125 453.4 267 80.1
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 2.2e-125 452.6 269 78.8
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.2e-125 452.6 270 80.0
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 2.9e-125 452.2 269 78.8
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 2.9e-125 452.2 270 80.4
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.9e-125 452.2 270 80.4
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 3.8e-125 451.8 269 76.6
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.8e-125 451.8 283 77.4
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 3.8e-125 451.8 269 79.6
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 6.5e-125 451.1 269 78.8
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 1.1e-124 450.3 299 73.6
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 1.1e-124 450.3 276 75.4
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 1.1e-124 450.3 275 75.6
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 1.1e-124 450.3 270 78.5
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 1.5e-124 449.9 269 76.6
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 2.5e-124 449.1 269 79.6
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 2.5e-124 449.1 267 79.0
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 5.5e-124 448.0 267 79.4
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 7.2e-124 447.6 268 79.9
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 7.2e-124 447.6 268 79.5
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 9.4e-124 447.2 268 79.5
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 1.2e-123 446.8 269 78.8
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 2.1e-123 446.0 269 78.1
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 2.1e-123 446.0 264 79.9
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 6.1e-123 444.5 269 77.3
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 6.1e-123 444.5 269 76.6
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 8.0e-123 444.1 270 78.1
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 1.8e-122 443.0 274 78.1
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 2.3e-122 442.6 270 78.9
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 2.3e-122 442.6 270 77.8
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 2.3e-122 442.6 269 77.7
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 4.0e-122 441.8 267 77.9
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 5.2e-122 441.4 267 78.7
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 6.7e-122 441.0 275 72.4
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 1.5e-121 439.9 275 73.1
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 2.6e-121 439.1 270 75.9
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 3.3e-121 438.7 275 77.8
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 5.7e-121 438.0 269 75.8
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 9.7e-121 437.2 275 73.5
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 9.7e-121 437.2 275 73.5
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 1.3e-120 436.8 275 72.7
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 1.3e-120 436.8 275 72.7
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 1.3e-120 436.8 275 72.7
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 1.1e-119 433.7 283 71.0
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 1.4e-119 433.3 275 72.4
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 4.1e-119 431.8 268 76.5
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 1.2e-118 430.3 269 75.1
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 1.0e-117 427.2 300 69.3
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 1.3e-117 426.8 268 75.7
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 1.9e-116 422.9 270 74.8
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 2.5e-116 422.5 264 78.0
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 1.2e-115 420.2 270 75.2
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 4.7e-115 418.3 263 77.9
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 1.0e-114 417.2 270 73.3
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 1.4e-114 416.8 284 72.5
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 2.0e-113 412.9 236 82.2
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.2e-112 409.5 250 76.8
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 6.3e-112 407.9 270 72.6
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 6.3e-112 407.9 270 72.6
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 1.0e-109 400.6 267 68.5
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 7.2e-108 394.4 245 77.1
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 8.8e-106 387.5 236 77.5
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.2e-105 387.1 265 69.1
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.5e-105 386.7 265 69.1
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 3.1e-103 379.0 254 68.5
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 3.1e-103 379.0 254 68.1
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 3.8e-101 372.1 255 67.1
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 8.6e-101 370.9 251 70.1
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 5.2e-98 361.7 190 88.4
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 2.7e-94 349.4 248 65.7
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 3.6e-91 339.0 411 47.7
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 5.2e-90 335.1 410 47.6
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 5.8e-89 331.6 282 56.7
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 9.8e-89 330.9 269 58.0
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 2.5e-84 316.2 268 57.1
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 2.6e-81 306.2 254 60.6
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 1.4e-79 300.4 256 58.6
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 4.1e-79 298.9 167 80.2
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 2.7e-78 296.2 167 79.6
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 8.6e-77 291.2 166 79.5
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 4.4e-73 278.9 277 49.5
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.1e-71 274.2 167 71.3
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 1.9e-68 263.5 132 87.1
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 7.3e-68 261.5 295 47.1
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 5.8e-65 251.9 159 74.2
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 2.7e-62 243.0 282 44.7
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 1.8e-58 230.3 142 78.2
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 7.6e-57 224.9 249 49.0
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 9.3e-55 218.0 293 41.0
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.2e-54 217.6 135 80.0
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 4.6e-54 215.7 141 65.2
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 1.2e-49 201.1 249 46.2
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 9.6e-44 181.4 98 84.7
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 5.8e-41 172.2 215 41.4
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 9.3e-31 138.3 75 80.0
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 1.8e-29 134.0 71 81.7
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 1.5e-28 131.0 91 63.7
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 1.5e-28 131.0 91 63.7
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 7.4e-28 128.6 105 55.2
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 8.2e-27 125.2 80 77.5
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 2.7e-22 110.2 92 62.0
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 2.3e-21 107.1 80 65.0
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.9e-21 106.3 75 69.3
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 5.1e-21 105.9 109 53.2
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 5.0e-16 89.4 76 63.2
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 2.5e-15 87.0 52 78.8
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 2.5e-15 87.0 87 55.2
MCO11G144 Micromonas commoda HOM05D019566 ORTHO05D017343 4.2e-07 59.7 126 32.5
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 9.4e-07 58.5 170 27.6


User provided reference genes

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