Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1542.7 805 100.0
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1332.8 761 91.2
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1268.4 801 82.4
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1226.1 807 78.3
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1224.2 806 78.3
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 0.0e+00 1209.5 808 79.0
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1199.1 807 78.1
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1189.9 804 77.9
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1181.4 806 77.2
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1178.3 805 76.9
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1172.9 817 76.0
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1171.4 817 76.7
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1166.0 806 75.9
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1164.8 815 76.0
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1163.3 809 77.3
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1162.1 809 76.0
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1160.2 809 76.0
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1159.1 808 76.2
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1155.6 797 75.7
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1152.1 786 77.1
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1150.2 814 75.2
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1148.3 807 75.0
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1147.1 808 75.6
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1144.0 807 75.5
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1141.7 805 76.0
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1140.9 805 75.4
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1139.4 807 75.2
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1138.3 811 74.5
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1133.6 762 78.0
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1132.1 847 71.1
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1130.5 804 74.3
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1127.9 813 73.8
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1126.7 811 73.7
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1124.0 804 74.4
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1123.6 805 74.3
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1123.2 806 74.6
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1122.1 805 74.7
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1121.3 810 73.8
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1120.9 800 73.6
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1120.1 803 74.0
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1120.1 804 73.0
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 0.0e+00 1119.4 805 72.5
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1119.4 810 72.5
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1117.4 808 73.9
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1117.4 880 70.0
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1112.8 815 73.1
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1111.3 800 74.0
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1110.1 815 72.4
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1108.6 805 72.3
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1107.8 800 73.8
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1103.6 795 72.8
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1100.1 814 72.6
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1097.8 856 70.0
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 0.0e+00 1097.0 805 74.7
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1094.3 801 71.5
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 0.0e+00 1093.2 801 71.7
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1084.3 801 71.2
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 0.0e+00 1084.3 826 70.9
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1082.8 804 71.0
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1081.6 814 71.4
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 0.0e+00 1081.6 798 71.4
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 0.0e+00 1078.9 807 70.4
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1078.2 798 71.7
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1077.8 804 71.0
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1077.4 804 71.0
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 0.0e+00 1077.4 799 71.6
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1076.6 816 70.7
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 5.5e-312 1074.7 810 71.7
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 1.1e-311 1072.8 801 70.8
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 6.6e-311 1070.5 795 71.2
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 3.5e-309 1064.7 904 65.2
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 1.3e-308 1062.8 801 70.5
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 3.0e-308 1061.6 779 73.8
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.1e-307 1059.7 792 71.0
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 9.6e-307 1056.6 807 69.1
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 1.3e-306 1056.2 799 70.5
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 1.6e-306 1055.8 812 69.5
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 2.1e-306 1055.4 793 70.6
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 3.6e-306 1054.7 808 70.2
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 8.1e-306 1053.5 800 69.8
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 1.5e-304 1049.3 807 68.6
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 1.3e-303 1046.2 793 71.0
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 4.2e-302 1041.2 811 69.2
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 7.1e-302 1040.4 792 70.1
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 7.1e-302 1040.4 792 70.1
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 3.5e-301 1038.1 792 70.2
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 5.1e-300 1034.2 648 82.4
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 6.7e-300 1033.9 792 70.1
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 6.7e-300 1033.9 792 70.1
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 8.7e-300 1033.5 808 68.7
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 1.1e-299 1033.1 809 67.9
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 6.2e-298 1027.3 808 67.3
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 1.1e-297 1026.5 793 69.6
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 7.6e-296 1020.4 648 82.1
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.7e-295 1019.2 648 81.8
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 3.8e-295 1018.1 807 69.4
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 2.5e-294 1015.4 816 65.8
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 2.9e-287 991.9 806 66.7
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 6.5e-287 990.7 808 67.3
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 3.4e-280 968.4 789 66.4
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 6.1e-277 957.6 846 62.8
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 1.8e-276 956.1 792 65.8
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 1.1e-275 953.4 794 65.6
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 2.6e-275 952.2 800 64.0
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.1e-273 945.3 801 62.2
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 3.8e-271 938.3 792 65.2
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 9.7e-267 923.7 793 64.1
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.7e-256 889.0 798 61.4
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.7e-255 886.3 723 69.6
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 5.0e-255 884.8 794 62.5
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 3.2e-254 882.1 827 58.9
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 6.6e-231 804.7 652 65.2
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 6.0e-224 781.6 809 53.8
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 4.4e-219 765.4 638 65.5
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 1.0e-207 727.6 480 79.6
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.5e-206 723.8 851 49.2
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.5e-206 723.8 851 49.2
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 6.4e-202 708.4 878 47.0
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 7.9e-192 674.9 532 70.1
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.7e-191 671.4 853 47.4
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 4.3e-182 642.5 834 46.4
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.8e-181 639.0 655 54.4
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 7.1e-177 625.2 458 70.1
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 4.5e-171 605.9 598 56.7
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.5e-169 600.1 622 54.8
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 1.0e-167 594.7 436 70.2
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 2.8e-133 480.3 411 63.5
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 4.3e-105 386.7 613 43.2
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 2.2e-93 347.8 617 41.5
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 2.0e-86 324.7 766 32.8
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 2.6e-86 324.3 216 80.6
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 9.9e-78 295.8 291 59.8
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 6.2e-72 276.6 208 71.6
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 4.9e-69 266.9 198 72.2
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 8.4e-69 266.2 198 72.2
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 8.4e-69 266.2 198 72.2
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 3.2e-68 264.2 212 69.3
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 6.2e-64 250.0 512 37.9
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 4.5e-62 243.8 485 38.1
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.7e-61 241.9 236 56.8
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 3.9e-50 204.1 131 80.2
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 6.3e-48 196.8 120 80.8
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.6e-43 182.2 198 55.1
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.6e-41 174.9 380 34.7
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 2.7e-35 154.8 93 80.6
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 3.6e-35 154.5 88 80.7
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 3.6e-35 154.5 88 80.7
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.3e-34 151.8 130 60.8
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 8.8e-34 149.8 152 57.9
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 1.3e-32 146.0 166 48.8
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.3e-24 119.4 161 49.1
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 2.2e-24 118.6 75 85.3
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.2e-19 102.8 146 38.4
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 1.6e-19 102.4 90 57.8
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.6e-19 102.4 85 61.2
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.7e-19 101.7 108 52.8
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 2.0e-17 95.5 74 63.5
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 3.4e-17 94.7 56 83.9
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 9.8e-17 93.2 72 65.3
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 3.1e-15 88.2 107 47.7
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 1.0e-13 83.2 59 66.1
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 2.3e-13 82.0 77 57.1
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 7.2e-12 77.0 77 55.8
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 1.6e-11 75.9 52 84.6
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 3.6e-11 74.7 52 82.7
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.1e-11 73.9 247 30.8
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 3.0e-10 71.6 76 55.3
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 1.5e-09 69.3 51 78.4
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 9.8e-09 66.6 65 64.6
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 4.9e-08 64.3 144 35.4
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 9.2e-07 60.1 106 42.5
HPP92_028743 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.6e-06 59.3 93 47.3


User provided reference genes

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