Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0382 Trochodendron aralioides HOM05D003398 ORTHO05D003867 6.9e-62 240.4 113 100.0
TAR625G0506 Trochodendron aralioides HOM05D003398 ORTHO05D003867 5.6e-27 124.4 62 93.5
CiPaw.03G047800 Carya illinoinensis HOM05D003398 ORTHO05D003867 6.1e-26 120.9 63 88.9
RhsimUnG0005400 Rhododendron simsii HOM05D003398 ORTHO05D003867 2.3e-25 119.0 63 82.5
Manes.15G154000 Manihot esculenta HOM05D003398 ORTHO05D003867 4.0e-25 118.2 63 85.7
Dinv33404 Davidia involucrata HOM05D003398 ORTHO05D003867 1.2e-24 116.7 63 84.1
Cfa007310 Carpinus fangiana HOM05D003398 ORTHO05D003867 2.0e-24 115.9 63 85.7
Haze_14782 Corylus avellana HOM05D003398 ORTHO05D003867 2.0e-24 115.9 63 85.7
MBI18_g30686_MAGBIO Magnolia biondii HOM05D003398 ORTHO05D003867 2.0e-24 115.9 62 83.9
Sc18g0003950 Simmondsia chinensis HOM05D003398 ORTHO05D003867 2.0e-24 115.9 63 84.1
Nn8g40838 Nelumbo nucifera HOM05D003398 ORTHO05D003867 2.6e-24 115.5 62 82.3
RhsimUnG0088100 Rhododendron simsii HOM05D003398 ORTHO05D003867 2.6e-24 115.5 63 79.4
QL02p073523 Quercus lobata HOM05D003398 ORTHO05D003867 3.4e-24 115.2 63 82.5
Lj7A603G63 Lonicera japonica HOM05D003398 ORTHO05D003867 4.4e-24 114.8 63 82.5
Potri.001G339900 Populus trichocarpa HOM05D003398 ORTHO05D003867 5.7e-24 114.4 63 81.0
Atru.chr6.2457 Acer truncatum HOM05D003398 ORTHO05D003867 9.8e-24 113.6 63 81.0
ClCG00G004890 Citrullus lanatus HOM05D003398 ORTHO05D003867 9.8e-24 113.6 63 81.0
ClCG09G019490 Citrullus lanatus HOM05D003398 ORTHO05D003867 9.8e-24 113.6 63 81.0
MELO3C021605.2 Cucumis melo HOM05D003398 ORTHO05D003867 1.7e-23 112.8 63 81.0
CsaV3_5G026890 Cucumis sativus L. HOM05D003398 ORTHO05D003867 1.7e-23 112.8 63 81.0
PSO478G3797 Papaver somniferum HOM05D003398 ORTHO05D003867 1.7e-23 112.8 62 80.6
Oeu050452.1 Olea europaea HOM05D003398 ORTHO05D003867 2.2e-23 112.5 63 77.8
Thecc.04G022800 Theobroma cacao HOM05D003398 ORTHO05D003867 2.9e-23 112.1 63 79.4
Manes.17G109300 Manihot esculenta HOM05D003398 ORTHO05D003867 3.7e-23 111.7 62 79.0
PSO017G4179 Papaver somniferum HOM05D003398 ORTHO05D003867 3.7e-23 111.7 62 79.0
CANSAT21G2202 Cannabis sativa HOM05D003398 ORTHO05D003867 4.9e-23 111.3 63 79.4
Rhsim08G0047400 Rhododendron simsii HOM05D003398 ORTHO05D003867 4.9e-23 111.3 63 79.4
PGR142G0179 Punica granatum HOM05D003398 ORTHO05D003867 6.4e-23 110.9 63 79.4
Actinidia36143 Actinidia chinensis HOM05D003398 ORTHO05D003867 8.3e-23 110.5 63 76.2
ATR0824G258 Amborella trichopoda HOM05D003398 ORTHO05D003867 8.3e-23 110.5 62 79.0
CAN.G386.27 Capsicum annuum HOM05D003398 ORTHO05D003867 8.3e-23 110.5 63 76.2
Peaxi162Scf00418g00733 Petunia axillaris HOM05D003398 ORTHO05D003867 8.3e-23 110.5 63 77.8
Oeu054646.1 Olea europaea HOM05D003398 ORTHO05D003867 1.1e-22 110.2 63 76.2
CSS0026494 Camellia sinensis var. sinensis HOM05D003398 ORTHO05D003867 1.8e-22 109.4 63 77.8
CSS0037210 Camellia sinensis var. sinensis HOM05D003398 ORTHO05D003867 1.8e-22 109.4 63 77.8
CDE07G0781 Ceratophyllum demersum HOM05D003398 ORTHO05D003867 1.8e-22 109.4 62 75.8
CDE07G1338 Ceratophyllum demersum HOM05D003398 ORTHO05D003867 1.8e-22 109.4 62 75.8
CSS0009448 Camellia sinensis var. sinensis HOM05D003398 ORTHO05D003867 2.4e-22 109.0 63 77.8
CSS0035127 Camellia sinensis var. sinensis HOM05D003398 ORTHO05D003867 2.4e-22 109.0 63 77.8
CAN.G1497.1 Capsicum annuum HOM05D003398 ORTHO05D003867 2.4e-22 109.0 63 74.6
Prupe.3G296400 Prunus persica HOM05D003398 ORTHO05D003867 7.0e-22 107.5 63 76.2
Sabra17G0099900 Salix brachista HOM05D003398 ORTHO05D003867 7.0e-22 107.5 63 79.4
Sabra17G0103200 Salix brachista HOM05D003398 ORTHO05D003867 7.0e-22 107.5 63 79.4
Atru.chr1.3014 Acer truncatum HOM05D003398 ORTHO05D003867 9.2e-22 107.1 63 74.6
Atru.chr11.509 Acer truncatum HOM05D003398 ORTHO05D003867 9.2e-22 107.1 63 76.2
Ciclev10016815m.g Citrus clementina HOM05D003398 ORTHO05D003867 9.2e-22 107.1 62 75.8
Cc07_g00160 Coffea canephora HOM05D003398 ORTHO05D003867 9.2e-22 107.1 63 76.2
Potri.017G120800 Populus trichocarpa HOM05D003398 ORTHO05D003867 9.2e-22 107.1 63 77.8
FAN15G2381 Fragaria x ananassa HOM05D003398 ORTHO05D003867 1.6e-21 106.3 63 71.4
PGSC0003DMG400011703 Solanum tuberosum HOM05D003398 ORTHO05D003867 1.6e-21 106.3 63 73.0
Duzib264G0348 Durio zibethinus HOM05D003398 ORTHO05D003867 2.0e-21 105.9 63 69.8
Lsat_1_v5_gn_4_184621 Lactuca sativa HOM05D003398 ORTHO05D003867 2.0e-21 105.9 62 75.8
RcHm_v2.0_Chr2g0173661 Rosa chinensis HOM05D003398 ORTHO05D003867 2.0e-21 105.9 63 74.6
Sed0013516 Sechium edule HOM05D003398 ORTHO05D003867 2.7e-21 105.5 63 73.0
vmacro05894 Vaccinium macrocarpon HOM05D003398 ORTHO05D003867 2.7e-21 105.5 63 73.0
Sabra16G0220000 Salix brachista HOM05D003398 ORTHO05D003867 3.5e-21 105.1 63 76.2
Hund13034 Selenicereus undatus HOM05D003398 ORTHO05D003867 3.5e-21 105.1 63 76.2
vmacro18303 Vaccinium macrocarpon HOM05D003398 ORTHO05D003867 3.5e-21 105.1 63 77.8
GSVIVG01003986001 Vitis vinifera HOM05D003398 ORTHO05D003867 4.6e-21 104.8 63 71.4
FvH4_2g09970 Fragaria vesca HOM05D003398 ORTHO05D003867 5.9e-21 104.4 63 69.8
FAN20G3040 Fragaria x ananassa HOM05D003398 ORTHO05D003867 5.9e-21 104.4 63 69.8
FAN24G2305 Fragaria x ananassa HOM05D003398 ORTHO05D003867 5.9e-21 104.4 63 69.8
FAN27G1215 Fragaria x ananassa HOM05D003398 ORTHO05D003867 5.9e-21 104.4 63 69.8
Eucgr.I01706 Eucalyptus grandis HOM05D003398 ORTHO05D003867 2.3e-20 102.4 63 73.0
Duzib264G0135 Durio zibethinus HOM05D003398 ORTHO05D003867 3.0e-20 102.1 63 69.8
MD09G1020000 Malus domestica HOM05D003398 ORTHO05D003867 5.0e-20 101.3 63 66.7
MD15G1129500 Malus domestica HOM05D003398 ORTHO05D003867 5.0e-20 101.3 63 66.7
PSO067G0049 Papaver somniferum HOM05D003398 ORTHO05D003867 5.0e-20 101.3 62 69.4
Hund07917 Selenicereus undatus HOM05D003398 ORTHO05D003867 5.0e-20 101.3 63 69.8
Atru.chr12.1129 Acer truncatum HOM05D003398 ORTHO05D003867 6.6e-20 100.9 63 73.0
AUR62042865 Chenopodium quinoa HOM05D003398 ORTHO05D003867 6.6e-20 100.9 63 73.0
COL.COLO4_29206 Corchorus olitorius HOM05D003398 ORTHO05D003867 8.6e-20 100.5 63 66.7
AUR62034120 Chenopodium quinoa HOM05D003398 ORTHO05D003867 1.1e-19 100.1 63 71.4
AUR62037710 Chenopodium quinoa HOM05D003398 ORTHO05D003867 1.1e-19 100.1 63 73.0
EL10Ac4g09990 Beta vulgaris HOM05D003398 ORTHO05D003867 1.5e-19 99.8 63 66.7
ECA232G2563 Erigeron canadensis HOM05D003398 ORTHO05D003867 2.5e-19 99.0 62 71.0
SGA_v2.0_scaffold34G13651 Striga asiatica HOM05D003398 ORTHO05D003867 5.6e-19 97.8 63 68.3
Gohir.D07G232000 Gossypium hirsutum HOM05D003398 ORTHO05D003867 7.3e-19 97.4 63 66.7
Gorai.001G267200 Gossypium raimondii HOM05D003398 ORTHO05D003867 7.3e-19 97.4 63 66.7
HanXRQChr07g0199121 Helianthus annuus HOM05D003398 ORTHO05D003867 1.6e-18 96.3 62 67.7
Solyc01g009443.1 Solanum lycopersicum HOM05D003398 ORTHO05D003867 1.6e-18 96.3 63 68.3
Sopen01g004980 Solanum pennellii HOM05D003398 ORTHO05D003867 1.6e-18 96.3 63 68.3
Gohir.A07G224800 Gossypium hirsutum HOM05D003398 ORTHO05D003867 2.8e-18 95.5 63 65.1
Lj2g0003632 Lotus japonicus HOM05D003398 ORTHO05D003867 2.8e-18 95.5 63 66.7
HanXRQChr15g0486781 Helianthus annuus HOM05D003398 ORTHO05D003867 3.6e-18 95.1 62 67.7
TPR.G17224 Trifolium pratense HOM05D003398 ORTHO05D003867 3.6e-18 95.1 63 68.3
Glyma.16G067200 Glycine max HOM05D003398 ORTHO05D003867 6.2e-18 94.4 63 66.7
Lalb_Chr24g0403491 Lupinus albus HOM05D003398 ORTHO05D003867 6.2e-18 94.4 62 66.1
Phvul.003G074200 Phaseolus vulgaris HOM05D003398 ORTHO05D003867 6.2e-18 94.4 63 61.9
Atru.chr4.365 Acer truncatum HOM05D003398 ORTHO05D003867 8.0e-18 94.0 63 69.8
Lj1g0020548 Lotus japonicus HOM05D003398 ORTHO05D003867 8.0e-18 94.0 63 66.7
SGA_v2.0_scaffold47G17675 Striga asiatica HOM05D003398 ORTHO05D003867 8.0e-18 94.0 62 66.1
arahy.Tifrunner.gnm1.ann1.YDW0SS Arachis hypogaea HOM05D003398 ORTHO05D003867 1.1e-17 93.6 63 65.1
Duzib147G0181 Durio zibethinus HOM05D003398 ORTHO05D003867 1.4e-17 93.2 63 61.9
Aqoxy7G03969 Aquilegia oxysepala HOM05D003398 ORTHO05D003867 1.8e-17 92.8 63 61.9
Ca_19415_v3 Cicer arietinum L. HOM05D003398 ORTHO05D003867 1.8e-17 92.8 63 68.3
DCAR_021745 Daucus carota HOM05D003398 ORTHO05D003867 2.3e-17 92.4 63 61.9
Glyma.05G114300 Glycine max HOM05D003398 ORTHO05D003867 2.3e-17 92.4 63 65.1
Phvul.002G317300 Phaseolus vulgaris HOM05D003398 ORTHO05D003867 2.3e-17 92.4 63 66.7
Phvul.004G059400 Phaseolus vulgaris HOM05D003398 ORTHO05D003867 2.3e-17 92.4 63 63.5
Medtr4g052810 Medicago truncatula HOM05D003398 ORTHO05D003867 3.1e-17 92.0 61 63.9
VMungo1383G1108 Vigna mungo HOM05D003398 ORTHO05D003867 5.2e-17 91.3 63 66.7
unitig_21.g20275 Utricularia gibba HOM05D003198 ORTHO05D003867 6.8e-17 90.9 63 61.9
Lalb_Chr02g0158081 Lupinus albus HOM05D003398 ORTHO05D003867 1.5e-16 89.7 63 60.3
TWI36G1734 Tripterygium wilfordii HOM05D003398 ORTHO05D003867 2.0e-16 89.4 63 66.7
Psat7g187520 Pisum sativum HOM05D003398 ORTHO05D003867 2.6e-16 89.0 63 60.3
AL3G13090 Arabidopsis lyrata HOM05D003398 ORTHO05D003867 3.4e-16 88.6 63 61.9
AT3G03420 Arabidopsis thaliana HOM05D003398 ORTHO05D003867 3.4e-16 88.6 63 61.9
BcaC05g30275 Brassica carinata HOM05D003398 ORTHO05D003867 3.4e-16 88.6 63 61.9
A05p43830 Brassica napus HOM05D003398 ORTHO05D003867 3.4e-16 88.6 63 61.9
C05p63410 Brassica napus HOM05D003398 ORTHO05D003867 3.4e-16 88.6 63 61.9
BolC5t35005H Brassica oleracea HOM05D003398 ORTHO05D003867 3.4e-16 88.6 63 61.9
Carub.0003s0256 Capsella rubella HOM05D003398 ORTHO05D003867 3.4e-16 88.6 63 61.9
Medtr4g052800 Medicago truncatula HOM05D003398 ORTHO05D003867 3.4e-16 88.6 61 60.7
CARHR077440 Cardamine hirsuta HOM05D003398 ORTHO05D003867 4.4e-16 88.2 63 61.9
Thhalv10021562m.g Eutrema salsugineum HOM05D003398 ORTHO05D003867 4.4e-16 88.2 63 61.9
Aa31LG5G13920 Aethionema arabicum HOM05D003398 ORTHO05D003867 5.8e-16 87.8 63 61.9
Ca_23690_v3 Cicer arietinum L. HOM05D003398 ORTHO05D003867 5.8e-16 87.8 63 65.1
SalBow5G3830 Salvia bowleyana HOM05D003398 ORTHO05D003867 5.8e-16 87.8 62 59.7
Ah.05g175590 Amaranthus hybridus HOM05D003398 ORTHO05D003867 7.5e-16 87.4 63 60.3
Migut.E00642 Erythranthe guttata HOM05D003398 ORTHO05D003867 7.5e-16 87.4 62 61.3
Aqoxy5G03632 Aquilegia oxysepala HOM05D003398 ORTHO05D003867 9.8e-16 87.0 62 59.7
MSTRG.13012 Avicennia marina HOM05D003398 ORTHO05D003867 9.8e-16 87.0 64 62.5
BcaC05g30271 Brassica carinata HOM05D003398 ORTHO05D003867 9.8e-16 87.0 63 61.9
BcaC09g47745 Brassica carinata HOM05D003398 ORTHO05D003867 9.8e-16 87.0 63 60.3
A06p26380 Brassica napus HOM05D003398 ORTHO05D003867 9.8e-16 87.0 63 60.3
BNapus_Darmor_BZH_scaffold_162p00150 Brassica napus HOM05D003398 ORTHO05D003867 9.8e-16 87.0 63 60.3
BNapus_Darmor_BZH_scaffold_78p00130 Brassica napus HOM05D003398 ORTHO05D003867 9.8e-16 87.0 63 60.3
BolC1t05832H Brassica oleracea HOM05D003398 ORTHO05D003867 9.8e-16 87.0 63 60.3
BraA01t04581Z Brassica rapa HOM05D003398 ORTHO05D003867 9.8e-16 87.0 63 60.3
Aqoxy3G02674 Aquilegia oxysepala HOM05D003398 ORTHO05D003867 1.3e-15 86.7 62 59.7
Psat7g187560 Pisum sativum HOM05D003398 ORTHO05D003867 1.7e-15 86.3 62 61.3
Sp3g02420 Schrenkiella parvula HOM05D003398 ORTHO05D003867 1.7e-15 86.3 63 60.3
SalBow1G3957 Salvia bowleyana HOM05D003398 ORTHO05D003867 2.9e-15 85.5 61 60.7
SalBow1G6722 Salvia bowleyana HOM05D003398 ORTHO05D003867 2.9e-15 85.5 61 60.7
THA.LOC104820838 Tarenaya hassleriana HOM05D003398 ORTHO05D003867 2.9e-15 85.5 62 64.5
SalBow5G0434 Salvia bowleyana HOM05D003398 ORTHO05D003867 4.9e-15 84.7 62 58.1
RcHm_v2.0_Chr6g0276241 Rosa chinensis HOM05D003398 ORTHO05D003867 1.1e-14 83.6 107 43.0
RcHm_v2.0_Chr7g0238211 Rosa chinensis HOM05D003398 ORTHO05D003867 1.1e-14 83.6 63 61.9
Lalb_Chr20g0109481 Lupinus albus HOM05D003398 ORTHO05D003867 1.9e-14 82.8 63 61.9
BraA05t23120Z Brassica rapa HOM05D003398 ORTHO05D003867 4.1e-14 81.6 63 60.3
Lj1g0026325 Lotus japonicus HOM05D003398 ORTHO05D003867 4.1e-14 81.6 62 54.8
RcHm_v2.0_Chr7g0188211 Rosa chinensis HOM05D003398 ORTHO05D003867 5.4e-14 81.3 63 60.3
TWI36G1505 Tripterygium wilfordii HOM05D003398 ORTHO05D003867 7.0e-14 80.9 58 60.3
RcHm_v2.0_Chr7g0217921 Rosa chinensis HOM05D003398 ORTHO05D003867 9.2e-14 80.5 107 43.0
CiPaw.10G123000 Carya illinoinensis HOM05D003398 ORTHO05D003867 1.2e-13 80.1 44 79.5
COL.COLO4_29209 Corchorus olitorius HOM05D003398 ORTHO05D003867 2.0e-13 79.3 69 50.7
SHI03844 Sapria himalayana HOM05D003398 ORTHO05D003867 7.8e-13 77.4 116 39.7
arahy.Tifrunner.gnm1.ann1.0A6Q27 Arachis hypogaea HOM05D003398 ORTHO05D003867 1.3e-12 76.6 64 57.8
arahy.Tifrunner.gnm1.ann1.F3JNFU Arachis hypogaea HOM05D003398 ORTHO05D003867 1.3e-12 76.6 64 57.8
Zm00001eb079360 Zea mays HOM05D003398 ORTHO05D003867 3.0e-12 75.5 62 56.5
Cpa.g.sc862.5 Carica papaya HOM05D003398 ORTHO05D003867 3.9e-12 75.1 39 84.6
Atru.chr11.567 Acer truncatum HOM05D003398 ORTHO05D003867 5.0e-12 74.7 46 63.0
BcaC05g30535 Brassica carinata HOM05D003398 ORTHO05D003867 5.0e-12 74.7 89 42.7
THA.LOC104820837 Tarenaya hassleriana HOM05D003398 ORTHO05D003867 5.0e-12 74.7 62 54.8
HPP92_009920 Vanilla planifolia HOM05D003398 ORTHO05D003867 6.6e-12 74.3 56 58.9
Nitab4.5_0000227g0210 Nicotiana tabacum HOM05D003398 ORTHO05D003867 8.6e-12 73.9 43 72.1
Nitab4.5_0002914g0030 Nicotiana tabacum HOM05D003398 ORTHO05D003867 8.6e-12 73.9 43 72.1
Os12g0288900 Oryza sativa ssp. japonica HOM05D003398 ORTHO05D003867 3.3e-11 72.0 63 55.6
AagrBONN_evm.TU.Sc2ySwM_117.3863 Anthoceros agrestis HOM05D003398 ORTHO05D003867 9.5e-11 70.5 63 46.0
arahy.Tifrunner.gnm1.ann1.38E20H Arachis hypogaea HOM05D003398 ORTHO05D003867 3.6e-10 68.6 63 50.8
SMO339G0056 Selaginella moellendorffii HOM05D003398 ORTHO05D003867 3.6e-10 68.6 62 43.5
AUR62041287 Chenopodium quinoa HOM05D003398 ORTHO05D003867 8.1e-10 67.4 42 69.0
HPP92_023200 Vanilla planifolia HOM05D003398 ORTHO05D003867 8.1e-10 67.4 63 44.4
arahy.Tifrunner.gnm1.ann1.47K06E Arachis hypogaea HOM05D003398 ORTHO05D003867 1.8e-09 66.2 63 49.2
arahy.Tifrunner.gnm1.ann1.2ED5FZ Arachis hypogaea HOM05D003398 ORTHO05D003867 2.3e-09 65.9 63 49.2
arahy.Tifrunner.gnm1.ann1.J4CY8C Arachis hypogaea HOM05D003398 ORTHO05D003867 2.3e-09 65.9 63 49.2
arahy.Tifrunner.gnm1.ann1.BK7YP9 Arachis hypogaea HOM05D003398 ORTHO05D003867 3.1e-09 65.5 63 49.2
Lalb_Chr21g0317671 Lupinus albus HOM05D003398 ORTHO05D003867 3.1e-09 65.5 64 43.8
Psat4g168600 Pisum sativum HOM05D003398 ORTHO05D003867 3.1e-09 65.5 63 50.8
SalBow5G4242 Salvia bowleyana HOM05D003398 ORTHO05D003867 5.2e-09 64.7 62 48.4
Actinidia05959 Actinidia chinensis HOM05D003398 ORTHO05D003867 6.8e-09 64.3 42 61.9
Pp3c24_12610 Physcomitrium patens HOM05D003398 ORTHO05D003867 1.2e-08 63.5 62 43.5
Pp3c20_19010 Physcomitrium patens HOM05D003398 ORTHO05D003867 1.5e-08 63.2 62 38.7
SalBow8G1447 Salvia bowleyana HOM05D003398 ORTHO05D003867 4.4e-08 61.6 62 46.8
MCO04G143 Micromonas commoda HOM05D003398 ORTHO05D003867 5.8e-08 61.2 63 41.3
Sed0012828 Sechium edule HOM05D003398 ORTHO05D003867 5.8e-08 61.2 40 75.0
SalBow2G0798 Salvia bowleyana HOM05D003398 ORTHO05D003867 2.2e-07 59.3 51 51.0
Mapoly0024s0105 Marchantia polymorpha HOM05D003398 ORTHO05D003867 1.9e-06 56.2 64 43.8
RcHm_v2.0_Chr2g0098111 Rosa chinensis HOM05D003398 ORTHO05D003867 3.2e-06 55.5 85 42.4
Cre17.g697934 Chlamydomonas reinhardtii HOM05D003398 ORTHO05D003867 9.2e-06 53.9 62 37.1
Os04g0482700 Oryza sativa ssp. japonica HOM05D003398 ORTHO05D003867 9.2e-06 53.9 65 44.6


User provided reference genes

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