Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.2e-141 506.5 253 100.0
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.3e-105 386.7 224 85.7
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 1.9e-99 366.3 225 80.9
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 2.7e-98 362.5 225 79.1
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 3.5e-98 362.1 226 78.3
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 1.8e-97 359.8 225 78.2
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 7.4e-96 354.4 224 78.1
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 2.8e-95 352.4 225 75.6
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 6.3e-95 351.3 225 76.9
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 3.1e-94 349.0 225 74.2
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 4.1e-94 348.6 225 76.9
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 6.9e-94 347.8 226 78.8
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 6.9e-94 347.8 225 76.0
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 9.0e-94 347.4 225 74.2
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 2.0e-93 346.3 224 78.1
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.6e-93 345.9 225 74.2
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 2.6e-93 345.9 224 76.3
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 7.6e-93 344.4 225 71.6
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 1.3e-92 343.6 225 76.4
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.3e-92 343.6 225 72.9
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 2.9e-92 342.4 228 71.9
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 3.8e-92 342.0 224 76.3
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 8.5e-92 340.9 224 74.6
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 8.5e-92 340.9 224 73.7
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 2.5e-91 339.3 226 74.3
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 5.5e-91 338.2 224 72.8
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 1.2e-90 337.0 225 71.1
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 1.6e-90 336.7 227 73.6
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 2.7e-90 335.9 225 73.8
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 6.1e-90 334.7 225 73.8
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 6.1e-90 334.7 225 70.2
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 1.8e-89 333.2 225 69.8
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 3.0e-89 332.4 227 71.8
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 3.0e-89 332.4 226 76.1
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 3.9e-89 332.0 224 74.6
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 3.9e-89 332.0 225 69.8
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 6.7e-89 331.3 225 69.3
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 6.7e-89 331.3 225 71.6
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 1.1e-88 330.5 224 73.7
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 1.5e-88 330.1 224 72.3
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 1.9e-88 329.7 225 74.2
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 2.5e-88 329.3 225 70.7
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 2.5e-88 329.3 225 73.8
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 4.3e-88 328.6 225 69.3
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 7.4e-88 327.8 225 72.4
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 7.4e-88 327.8 228 69.7
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 7.4e-88 327.8 225 72.0
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 7.4e-88 327.8 227 70.0
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 2.2e-87 326.2 225 68.0
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 2.8e-87 325.9 226 73.0
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 2.8e-87 325.9 225 73.8
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 2.8e-87 325.9 227 72.7
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.7e-87 325.5 220 74.1
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.7e-87 325.5 220 74.1
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 3.7e-87 325.5 227 70.0
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 4.8e-87 325.1 227 70.0
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 6.3e-87 324.7 226 72.1
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.4e-86 323.6 225 72.9
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.4e-86 323.6 225 73.3
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.8e-86 323.2 225 73.3
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.8e-86 323.2 220 73.6
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.1e-86 322.4 225 72.9
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 3.1e-86 322.4 224 71.9
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 5.3e-86 321.6 224 74.1
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 6.9e-86 321.2 225 69.8
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 6.9e-86 321.2 225 68.4
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 1.2e-85 320.5 225 72.9
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.2e-85 320.5 225 72.9
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.2e-85 320.5 225 72.0
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.5e-85 320.1 225 68.4
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 2.6e-85 319.3 225 68.9
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 2.6e-85 319.3 227 68.3
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 7.7e-85 317.8 227 69.2
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.0e-84 317.4 236 66.5
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 2.2e-84 316.2 227 68.3
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.9e-84 315.8 225 70.7
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 2.9e-84 315.8 227 69.6
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 8.5e-84 314.3 225 69.3
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 8.5e-84 314.3 225 69.3
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 1.9e-83 313.2 225 69.8
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 1.9e-83 313.2 225 69.8
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.5e-83 312.8 225 64.9
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 2.5e-83 312.8 225 69.8
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 3.2e-83 312.4 225 68.4
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.2e-83 312.4 225 68.0
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.2e-83 312.4 227 67.0
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 4.2e-83 312.0 225 69.3
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 4.2e-83 312.0 225 68.4
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 9.4e-83 310.8 226 67.7
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 1.2e-82 310.5 225 69.3
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.2e-82 310.5 225 67.6
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 2.1e-82 309.7 225 69.8
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 3.6e-82 308.9 225 68.0
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 3.6e-82 308.9 225 69.3
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 7.9e-82 307.8 225 67.1
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.0e-81 307.4 227 65.6
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 2.3e-81 306.2 225 67.1
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 3.9e-81 305.4 227 66.5
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 6.7e-81 304.7 225 65.8
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 6.7e-81 304.7 225 65.8
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 6.7e-81 304.7 226 66.8
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 1.1e-80 303.9 225 67.1
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 9.7e-80 300.8 228 65.4
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 4.8e-79 298.5 249 62.2
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 4.8e-79 298.5 249 62.2
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 6.3e-79 298.1 268 59.7
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 1.8e-78 296.6 222 65.3
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 2.6e-77 292.7 228 65.8
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 3.4e-77 292.4 215 65.6
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 5.9e-77 291.6 225 66.2
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.3e-76 290.4 215 65.6
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 2.2e-76 289.7 226 65.5
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 2.9e-76 289.3 221 65.2
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 8.5e-76 287.7 228 65.4
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.4e-75 287.0 225 64.0
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 2.5e-75 286.2 226 62.4
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 4.2e-75 285.4 228 63.6
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 5.2e-73 278.5 226 61.1
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 4.4e-72 275.4 182 74.7
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 7.4e-72 274.6 225 62.2
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 2.8e-71 272.7 218 61.9
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 3.7e-71 272.3 225 62.7
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 3.7e-71 272.3 186 72.0
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 4.8e-71 271.9 268 54.5
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 4.8e-71 271.9 233 60.1
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 8.2e-71 271.2 159 83.6
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 8.5e-68 261.2 219 64.4
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.2e-67 259.2 182 72.0
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 1.5e-64 250.4 149 81.2
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 6.3e-63 245.0 226 58.4
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 6.3e-63 245.0 225 57.8
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 6.5e-60 235.0 150 74.7
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 1.9e-51 206.8 209 48.8
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.9e-51 206.8 123 82.9
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.9e-51 206.8 123 82.9
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 4.2e-51 205.7 128 77.3
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 4.0e-49 199.1 181 58.6
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.6e-42 177.2 154 55.8
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 3.0e-41 172.9 150 59.3
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 9.8e-40 167.9 156 48.1
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 2.7e-37 159.8 151 58.9
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 2.7e-37 159.8 151 58.9
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 1.0e-36 157.9 144 55.6
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 2.0e-32 143.7 93 77.4
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 2.4e-30 136.7 75 89.3
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 7.3e-27 125.2 75 81.3
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 2.2e-23 113.6 75 77.3
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 1.0e-20 104.8 105 57.1
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 1.0e-20 104.8 105 57.1
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 5.6e-19 99.0 63 76.2
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 1.1e-17 94.7 92 57.6
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.4e-17 93.6 141 36.9
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 3.8e-15 86.3 150 35.3
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 5.4e-14 82.4 83 56.6
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 5.6e-11 72.4 78 53.8
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 5.2e-09 65.9 42 71.4
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 4.9e-07 59.3 47 61.7
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 4.9e-07 59.3 46 58.7
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 9.3e-06 55.1 150 28.7


User provided reference genes

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