Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR479G0003 Trochodendron aralioides HOM05D002533 ORTHO05D002855 1.3e-57 226.1 109 100.0
TAR629G3146 Trochodendron aralioides HOM05D002533 ORTHO05D002855 6.1e-39 164.1 87 88.5
TAR501G0002 Trochodendron aralioides HOM05D002533 ORTHO05D002855 7.0e-35 150.6 79 87.3
TAR374G1205 Trochodendron aralioides HOM05D002533 ORTHO05D002855 4.5e-26 121.3 66 83.3
TAR623G1233 Trochodendron aralioides HOM05D002533 ORTHO05D002855 4.5e-26 121.3 66 83.3
TAR383G0854 Trochodendron aralioides HOM05D002533 ORTHO05D002855 2.0e-21 105.9 74 68.9
TAR636G1820 Trochodendron aralioides HOM05D002533 ORTHO05D002855 8.9e-14 80.5 73 58.9
TAR624G0926 Trochodendron aralioides HOM05D002533 ORTHO05D002855 6.4e-12 74.3 73 56.2
Aqoxy7G04113 Aquilegia oxysepala HOM05D002533 ORTHO05D002855 9.2e-11 70.5 73 49.3
PSO210G6377 Papaver somniferum HOM05D002533 ORTHO05D002855 3.5e-10 68.6 73 53.4
PSO210G6904 Papaver somniferum HOM05D002533 ORTHO05D002855 3.5e-10 68.6 73 53.4
CDE05G2946 Ceratophyllum demersum HOM05D002533 ORTHO05D002855 6.0e-10 67.8 58 56.9
A02p05620 Brassica napus HOM05D002533 ORTHO05D002855 1.0e-09 67.0 59 54.2
BraA02t05514Z Brassica rapa HOM05D002533 ORTHO05D002855 1.0e-09 67.0 59 54.2
BcaB05g23386 Brassica carinata HOM05D002533 ORTHO05D002855 1.3e-09 66.6 59 52.5
BcaC03g13684 Brassica carinata HOM05D002533 ORTHO05D002855 3.0e-09 65.5 59 52.5
BNapus_Darmor_BZH_scaffold_38p02330 Brassica napus HOM05D002533 ORTHO05D002855 3.0e-09 65.5 59 52.5
BolC2t06963H Brassica oleracea HOM05D002533 ORTHO05D002855 3.0e-09 65.5 59 52.5
QL02p000171 Quercus lobata HOM05D002533 ORTHO05D002855 3.9e-09 65.1 73 43.8
GSVIVG01035450001 Vitis vinifera HOM05D002533 ORTHO05D002855 3.9e-09 65.1 84 45.2
BcaC04g24219 Brassica carinata HOM05D002533 ORTHO05D002855 5.0e-09 64.7 59 52.5
A10p20160 Brassica napus HOM05D002533 ORTHO05D002855 5.0e-09 64.7 59 52.5
C09p56710 Brassica napus HOM05D002533 ORTHO05D002855 5.0e-09 64.7 59 52.5
BolC9t58528H Brassica oleracea HOM05D002533 ORTHO05D002855 5.0e-09 64.7 59 52.5
BraA10t44089Z Brassica rapa HOM05D002533 ORTHO05D002855 5.0e-09 64.7 59 52.5
Nn8g38708 Nelumbo nucifera HOM05D002533 ORTHO05D002855 5.0e-09 64.7 73 46.6
AL6G31040 Arabidopsis lyrata HOM05D002533 ORTHO05D002855 1.1e-08 63.5 59 50.8
AT5G19530 Arabidopsis thaliana HOM05D002533 ORTHO05D002855 1.1e-08 63.5 59 50.8
Carub.0006s1788 Capsella rubella HOM05D002533 ORTHO05D002855 1.1e-08 63.5 59 50.8
Thhalv10002037m.g Eutrema salsugineum HOM05D002533 ORTHO05D002855 1.1e-08 63.5 67 46.3
Thhalv10013833m.g Eutrema salsugineum HOM05D002533 ORTHO05D002855 1.1e-08 63.5 59 50.8
Sp6g24850 Schrenkiella parvula HOM05D002533 ORTHO05D002855 1.1e-08 63.5 59 50.8
Atru.chr7.1861 Acer truncatum HOM05D002533 ORTHO05D002855 3.3e-08 62.0 73 45.2
MSTRG.1706 Avicennia marina HOM05D002533 ORTHO05D002855 3.3e-08 62.0 85 43.5
Lsat_1_v5_gn_8_111221 Lactuca sativa HOM05D002533 ORTHO05D002855 5.6e-08 61.2 78 42.3
Lj5g0016747 Lotus japonicus HOM05D002533 ORTHO05D002855 5.6e-08 61.2 82 41.5
SGA_v2.0_scaffold64G21863 Striga asiatica HOM05D002533 ORTHO05D002855 5.6e-08 61.2 80 41.2
Oeu047078.1 Olea europaea HOM05D002533 ORTHO05D002855 7.3e-08 60.8 62 48.4
ATR0598G197 Amborella trichopoda HOM05D002533 ORTHO05D002855 9.5e-08 60.5 75 44.0
Carub.0004s0596 Capsella rubella HOM05D002533 ORTHO05D002855 9.5e-08 60.5 62 48.4
RcHm_v2.0_Chr6g0311611 Rosa chinensis HOM05D002533 ORTHO05D002855 9.5e-08 60.5 81 43.2
Aa31LG1G8900 Aethionema arabicum HOM05D002533 ORTHO05D002855 1.2e-07 60.1 62 46.8
CARHR193370 Cardamine hirsuta HOM05D002533 ORTHO05D002855 1.2e-07 60.1 59 49.2
Manes.03G052500 Manihot esculenta HOM05D002533 ORTHO05D002855 1.2e-07 60.1 57 49.1
Nitab4.5_0009678g0010 Nicotiana tabacum HOM05D002533 ORTHO05D002855 1.2e-07 60.1 51 56.9
Nitab4.5_0021288g0010 Nicotiana tabacum HOM05D002533 ORTHO05D002855 1.2e-07 60.1 51 56.9
Solyc08g061970.3 Solanum lycopersicum HOM05D002533 ORTHO05D002855 1.2e-07 60.1 59 52.5
Sopen08g017510 Solanum pennellii HOM05D002533 ORTHO05D002855 1.2e-07 60.1 59 52.5
VMungo0720G0384 Vigna mungo HOM05D002533 ORTHO05D002855 1.2e-07 60.1 82 43.9
Ciclev10008847m.g Citrus clementina HOM05D002533 ORTHO05D002855 1.6e-07 59.7 82 39.0
Haze_18117 Corylus avellana HOM05D002533 ORTHO05D002855 1.6e-07 59.7 73 46.6
Lalb_Chr11g0063311 Lupinus albus HOM05D002533 ORTHO05D002855 1.6e-07 59.7 59 50.8
Cpa.g.sc126.36 Carica papaya HOM05D002533 ORTHO05D002855 2.1e-07 59.3 55 50.9
CANSAT25G1641 Cannabis sativa HOM05D002533 ORTHO05D002855 2.8e-07 58.9 53 54.7
Peaxi162Scf00101g01413 Petunia axillaris HOM05D002533 ORTHO05D002855 2.8e-07 58.9 51 56.9
Actinidia27568 Actinidia chinensis HOM05D002533 ORTHO05D002855 3.6e-07 58.5 75 42.7
Dinv08517 Davidia involucrata HOM05D002533 ORTHO05D002855 3.6e-07 58.5 86 39.5
PGR044G0628 Punica granatum HOM05D002533 ORTHO05D002855 3.6e-07 58.5 78 42.3
SalBow4G3288 Salvia bowleyana HOM05D002533 ORTHO05D002855 3.6e-07 58.5 64 46.9
TWI63G1759 Tripterygium wilfordii HOM05D002533 ORTHO05D002855 3.6e-07 58.5 69 44.9
Gohir.A06G082700 Gossypium hirsutum HOM05D002533 ORTHO05D002855 4.7e-07 58.2 70 42.9
Gorai.010G097100 Gossypium raimondii HOM05D002533 ORTHO05D002855 4.7e-07 58.2 70 42.9
Cc08_g01290 Coffea canephora HOM05D002533 ORTHO05D002855 6.2e-07 57.8 63 46.0
Duzib187G0726 Durio zibethinus HOM05D002533 ORTHO05D002855 6.2e-07 57.8 58 51.7
Manes.16G084600 Manihot esculenta HOM05D002533 ORTHO05D002855 6.2e-07 57.8 51 54.9
Glyma.14G099200 Glycine max HOM05D002533 ORTHO05D002855 8.0e-07 57.4 58 51.7
Glyma.17G225500 Glycine max HOM05D002533 ORTHO05D002855 8.0e-07 57.4 82 43.9
Oeu003977.1 Olea europaea HOM05D002533 ORTHO05D002855 8.0e-07 57.4 57 49.1
Phvul.001G039100 Phaseolus vulgaris HOM05D002533 ORTHO05D002855 8.0e-07 57.4 58 51.7
VMungo0647G2468 Vigna mungo HOM05D002533 ORTHO05D002855 8.0e-07 57.4 60 46.7
CAN.G157.6 Capsicum annuum HOM05D002533 ORTHO05D002855 1.1e-06 57.0 79 41.8
FvH4_2g31200 Fragaria vesca HOM05D002533 ORTHO05D002855 1.1e-06 57.0 63 46.0
FAN15G2560 Fragaria x ananassa HOM05D002533 ORTHO05D002855 1.1e-06 57.0 63 46.0
FAN24G1185 Fragaria x ananassa HOM05D002533 ORTHO05D002855 1.1e-06 57.0 63 46.0
FAN27G2492 Fragaria x ananassa HOM05D002533 ORTHO05D002855 1.1e-06 57.0 63 46.0
Psat6g022400 Pisum sativum HOM05D002533 ORTHO05D002855 1.1e-06 57.0 79 44.3
MSTRG.11638 Avicennia marina HOM05D002533 ORTHO05D002855 1.4e-06 56.6 60 50.0
FAN20G1005 Fragaria x ananassa HOM05D002533 ORTHO05D002855 1.4e-06 56.6 57 52.6
Nn4g26294 Nelumbo nucifera HOM05D002533 ORTHO05D002855 1.4e-06 56.6 72 43.1
PSO210G4099 Papaver somniferum HOM05D002533 ORTHO05D002855 1.4e-06 56.6 55 49.1
Sc23g0004230 Simmondsia chinensis HOM05D002533 ORTHO05D002855 1.4e-06 56.6 40 65.0
TPR.G3589 Trifolium pratense HOM05D002533 ORTHO05D002855 1.4e-06 56.6 69 46.4
Aqoxy2G03371 Aquilegia oxysepala HOM05D002533 ORTHO05D002855 1.8e-06 56.2 64 46.9
DCAR_000821 Daucus carota HOM05D002533 ORTHO05D002855 1.8e-06 56.2 51 54.9
Duzib168G0561 Durio zibethinus HOM05D002533 ORTHO05D002855 1.8e-06 56.2 59 49.2
Gohir.D06G083601 Gossypium hirsutum HOM05D002533 ORTHO05D002855 1.8e-06 56.2 70 41.4
Oeu022784.1 Olea europaea HOM05D002533 ORTHO05D002855 1.8e-06 56.2 100 38.0
arahy.Tifrunner.gnm1.ann1.ITJF75 Arachis hypogaea HOM05D002533 ORTHO05D002855 2.3e-06 55.8 56 48.2
EL10Ac2g03797 Beta vulgaris HOM05D002533 ORTHO05D002855 2.3e-06 55.8 56 51.8
Lj5g0025896 Lotus japonicus HOM05D002533 ORTHO05D002855 2.3e-06 55.8 57 50.9
MBI13_g11357_MAGBIO Magnolia biondii HOM05D002533 ORTHO05D002855 2.3e-06 55.8 54 50.0
CANSAT78G1827 Cannabis sativa HOM05D002533 ORTHO05D002855 3.1e-06 55.5 64 45.3
ClCG08G009870 Citrullus lanatus HOM05D002533 ORTHO05D002855 3.1e-06 55.5 46 58.7
Ciclev10005374m.g Citrus clementina HOM05D002533 ORTHO05D002855 3.1e-06 55.5 75 45.3
COL.COLO4_34231 Corchorus olitorius HOM05D002533 ORTHO05D002855 3.1e-06 55.5 55 49.1
Migut.A00087 Erythranthe guttata HOM05D002533 ORTHO05D002855 3.1e-06 55.5 51 52.9
FvH4_4g15320 Fragaria vesca HOM05D002533 ORTHO05D002855 3.1e-06 55.5 55 49.1
FAN07G1266 Fragaria x ananassa HOM05D002533 ORTHO05D002855 3.1e-06 55.5 55 49.1
FAN12G2098 Fragaria x ananassa HOM05D002533 ORTHO05D002855 3.1e-06 55.5 55 49.1
FAN17G0826 Fragaria x ananassa HOM05D002533 ORTHO05D002855 3.1e-06 55.5 55 49.1
FAN22G1222 Fragaria x ananassa HOM05D002533 ORTHO05D002855 3.1e-06 55.5 55 49.1
Lalb_Chr14g0375561 Lupinus albus HOM05D002533 ORTHO05D002855 3.1e-06 55.5 82 40.2
MD13G1191500 Malus domestica HOM05D002533 ORTHO05D002855 3.1e-06 55.5 55 49.1
MD16G1191600 Malus domestica HOM05D002533 ORTHO05D002855 3.1e-06 55.5 55 49.1
Potri.006G222200 Populus trichocarpa HOM05D002533 ORTHO05D002855 3.1e-06 55.5 78 43.6
Prupe.1G011700 Prunus persica HOM05D002533 ORTHO05D002855 3.1e-06 55.5 55 49.1
RcHm_v2.0_Chr4g0416531 Rosa chinensis HOM05D002533 ORTHO05D002855 3.1e-06 55.5 55 49.1
Sabra06G0171900 Salix brachista HOM05D002533 ORTHO05D002855 3.1e-06 55.5 78 43.6
TWI09G1165 Tripterygium wilfordii HOM05D002533 ORTHO05D002855 3.1e-06 55.5 55 49.1
TWI53G0823 Tripterygium wilfordii HOM05D002533 ORTHO05D002855 3.1e-06 55.5 58 46.6
Duzib052G1080 Durio zibethinus HOM05D002533 ORTHO05D002855 4.0e-06 55.1 74 43.2
MBI01_g45396_MAGBIO Magnolia biondii HOM05D002533 ORTHO05D002855 4.0e-06 55.1 57 47.4
Medtr1g015300 Medicago truncatula HOM05D002533 ORTHO05D002855 4.0e-06 55.1 51 52.9
QL06p002973 Quercus lobata HOM05D002533 ORTHO05D002855 4.0e-06 55.1 75 45.3
Thecc.04G229300 Theobroma cacao HOM05D002533 ORTHO05D002855 4.0e-06 55.1 74 43.2
MSTRG.25980 Avicennia marina HOM05D002533 ORTHO05D002855 5.2e-06 54.7 60 48.3
Ca_13106_v3 Cicer arietinum L. HOM05D002533 ORTHO05D002855 5.2e-06 54.7 51 52.9
MELO3C006538.2 Cucumis melo HOM05D002533 ORTHO05D002855 5.2e-06 54.7 70 42.9
CsaV3_3G013410 Cucumis sativus L. HOM05D002533 ORTHO05D002855 5.2e-06 54.7 70 42.9
Glyma.10G248800 Glycine max HOM05D002533 ORTHO05D002855 5.2e-06 54.7 82 41.5
Glyma.20G145000 Glycine max HOM05D002533 ORTHO05D002855 5.2e-06 54.7 82 41.5
Lalb_Chr24g0393621 Lupinus albus HOM05D002533 ORTHO05D002855 5.2e-06 54.7 82 40.2
Psat4g210760 Pisum sativum HOM05D002533 ORTHO05D002855 5.2e-06 54.7 73 45.2
SalBow1G0957 Salvia bowleyana HOM05D002533 ORTHO05D002855 5.2e-06 54.7 86 38.4
Sed0025383 Sechium edule HOM05D002533 ORTHO05D002855 5.2e-06 54.7 70 42.9
SEGI_24094 Sequoiadendron giganteum HOM05D002533 ORTHO05D002855 5.2e-06 54.7 57 45.6
Atru.chr4.2497 Acer truncatum HOM05D002533 ORTHO05D002855 6.8e-06 54.3 74 43.2
CSS0000726 Camellia sinensis var. sinensis HOM05D002533 ORTHO05D002855 6.8e-06 54.3 83 38.6
CiPaw.02G096300 Carya illinoinensis HOM05D002533 ORTHO05D002855 6.8e-06 54.3 55 47.3
AUR62009091 Chenopodium quinoa HOM05D002533 ORTHO05D002855 6.8e-06 54.3 50 54.0
Haze_00915 Corylus avellana HOM05D002533 ORTHO05D002855 6.8e-06 54.3 74 43.2
Hma1.2p1_0231F.1_g097420 Hydrangea macrophylla HOM05D002533 ORTHO05D002855 6.8e-06 54.3 84 40.5
Sed0011327 Sechium edule HOM05D002533 ORTHO05D002855 6.8e-06 54.3 70 42.9
Hund19427 Selenicereus undatus HOM05D002533 ORTHO05D002855 6.8e-06 54.3 50 52.0
THA.LOC104811216 Tarenaya hassleriana HOM05D002533 ORTHO05D002855 6.8e-06 54.3 50 52.0
Thecc.09G061700 Theobroma cacao HOM05D002533 ORTHO05D002855 6.8e-06 54.3 60 46.7
arahy.Tifrunner.gnm1.ann1.WG4WWJ Arachis hypogaea HOM05D002533 ORTHO05D002855 8.9e-06 53.9 94 36.2
CsaV3_6G031960 Cucumis sativus L. HOM05D002533 ORTHO05D002855 8.9e-06 53.9 53 49.1
ECA236G4523 Erigeron canadensis HOM05D002533 ORTHO05D002855 8.9e-06 53.9 66 42.4
Eucgr.H03531 Eucalyptus grandis HOM05D002533 ORTHO05D002855 8.9e-06 53.9 75 41.3
Medtr3g104960 Medicago truncatula HOM05D002533 ORTHO05D002855 8.9e-06 53.9 64 48.4
TAR362G0781 Trochodendron aralioides HOM05D002533 ORTHO05D002855 8.9e-06 53.9 57 47.4


User provided reference genes

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