Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G1054 Trochodendron aralioides HOM05D003653 ORTHO05D004249 5.3e-190 667.5 343 100.0
TAR626G0857 Trochodendron aralioides HOM05D003653 ORTHO05D004249 4.1e-89 332.4 336 60.7
GSVIVG01015003001 Vitis vinifera HOM05D003653 ORTHO05D004249 4.7e-85 318.9 336 59.8
TWI32G0371 Tripterygium wilfordii HOM05D003653 ORTHO05D004249 6.1e-85 318.5 340 59.4
Dinv11396 Davidia involucrata HOM05D003653 ORTHO05D004249 2.3e-84 316.6 339 58.7
AT1G73430 Arabidopsis thaliana HOM05D003653 ORTHO05D004249 1.1e-83 314.3 341 58.1
Carub.0001s3831 Capsella rubella HOM05D003653 ORTHO05D004249 2.0e-83 313.5 342 58.5
CiPaw.07G188300 Carya illinoinensis HOM05D003653 ORTHO05D004249 2.6e-83 313.2 337 58.2
Carub.0002s2017 Capsella rubella HOM05D003653 ORTHO05D004249 4.4e-83 312.4 364 54.9
Cfa000655 Carpinus fangiana HOM05D003653 ORTHO05D004249 4.4e-83 312.4 341 57.8
C06p47610 Brassica napus HOM05D003653 ORTHO05D004249 7.4e-83 311.6 340 57.9
Eucgr.C00763 Eucalyptus grandis HOM05D003653 ORTHO05D004249 1.3e-82 310.8 341 57.2
THA.LOC104812181 Tarenaya hassleriana HOM05D003653 ORTHO05D004249 1.3e-82 310.8 339 57.2
AL2G33210 Arabidopsis lyrata HOM05D003653 ORTHO05D004249 1.7e-82 310.5 341 57.5
Sp5g28630 Schrenkiella parvula HOM05D003653 ORTHO05D004249 2.2e-82 310.1 340 57.6
Thhalv10018146m.g Eutrema salsugineum HOM05D003653 ORTHO05D004249 3.7e-82 309.3 337 57.6
Hma1.2p1_0179F.1_g079140 Hydrangea macrophylla HOM05D003653 ORTHO05D004249 3.7e-82 309.3 343 58.0
Prupe.7G190900 Prunus persica HOM05D003653 ORTHO05D004249 3.7e-82 309.3 340 57.9
Nn8g38522 Nelumbo nucifera HOM05D003653 ORTHO05D004249 4.8e-82 308.9 336 57.7
CANSAT56G3945 Cannabis sativa HOM05D003653 ORTHO05D004249 8.2e-82 308.1 341 57.2
QL02p096254 Quercus lobata HOM05D003653 ORTHO05D004249 3.1e-81 306.2 340 57.1
CiPaw.08G039100 Carya illinoinensis HOM05D003653 ORTHO05D004249 4.1e-81 305.8 339 56.6
Aqoxy7G04180 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 5.3e-81 305.4 336 56.2
COL.COLO4_21195 Corchorus olitorius HOM05D003653 ORTHO05D004249 5.3e-81 305.4 335 55.2
Manes.16G089600 Manihot esculenta HOM05D003653 ORTHO05D004249 5.3e-81 305.4 340 56.8
SalBow5G5324 Salvia bowleyana HOM05D003653 ORTHO05D004249 5.3e-81 305.4 340 54.1
Potri.010G138900 Populus trichocarpa HOM05D003653 ORTHO05D004249 7.0e-81 305.1 340 55.9
QL02p096361 Quercus lobata HOM05D003653 ORTHO05D004249 7.0e-81 305.1 340 56.5
Aa31LG4G3690 Aethionema arabicum HOM05D003653 ORTHO05D004249 9.1e-81 304.7 336 57.1
Aqoxy4G00013 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 1.6e-80 303.9 339 56.0
Atru.chr7.1784 Acer truncatum HOM05D003653 ORTHO05D004249 2.0e-80 303.5 340 55.9
Ciclev10007512m.g Citrus clementina HOM05D003653 ORTHO05D004249 3.5e-80 302.8 339 56.0
MD15G1224400 Malus domestica HOM05D003653 ORTHO05D004249 3.5e-80 302.8 334 56.3
Thecc.09G069200 Theobroma cacao HOM05D003653 ORTHO05D004249 3.5e-80 302.8 339 55.8
vmacro03339 Vaccinium macrocarpon HOM05D003653 ORTHO05D004249 4.5e-80 302.4 375 54.1
MD02G1104000 Malus domestica HOM05D003653 ORTHO05D004249 5.9e-80 302.0 335 56.7
SGA_v2.0_scaffold55G19872 Striga asiatica HOM05D003653 ORTHO05D004249 5.9e-80 302.0 341 55.7
Duzib150G1359 Durio zibethinus HOM05D003653 ORTHO05D004249 1.7e-79 300.4 339 55.5
Gohir.D06G081700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 1.7e-79 300.4 340 54.7
Gorai.010G095200 Gossypium raimondii HOM05D003653 ORTHO05D004249 1.7e-79 300.4 340 54.7
Migut.L01598 Erythranthe guttata HOM05D003653 ORTHO05D004249 2.2e-79 300.1 341 56.6
MSTRG.26501 Avicennia marina HOM05D003653 ORTHO05D004249 2.9e-79 299.7 342 55.6
PSO724G1082 Papaver somniferum HOM05D003653 ORTHO05D004249 3.8e-79 299.3 339 54.6
HanXRQChr11g0323951 Helianthus annuus HOM05D003653 ORTHO05D004249 5.0e-79 298.9 344 54.4
Gohir.A06G084400 Gossypium hirsutum HOM05D003653 ORTHO05D004249 6.5e-79 298.5 340 54.7
ATR0099G047 Amborella trichopoda HOM05D003653 ORTHO05D004249 1.5e-78 297.4 338 55.3
ECA247G3145 Erigeron canadensis HOM05D003653 ORTHO05D004249 1.9e-78 297.0 337 55.2
EL10Ac8g18959 Beta vulgaris HOM05D003653 ORTHO05D004249 3.2e-78 296.2 335 54.0
Haze_18437 Corylus avellana HOM05D003653 ORTHO05D004249 3.2e-78 296.2 331 58.0
Lsat_1_v5_gn_9_48260 Lactuca sativa HOM05D003653 ORTHO05D004249 3.2e-78 296.2 339 55.8
Actinidia05573 Actinidia chinensis HOM05D003653 ORTHO05D004249 7.2e-78 295.0 340 55.3
Manes.03G045400 Manihot esculenta HOM05D003653 ORTHO05D004249 7.2e-78 295.0 335 55.8
RcHm_v2.0_Chr2g0096121 Rosa chinensis HOM05D003653 ORTHO05D004249 7.2e-78 295.0 338 55.6
Aqoxy1G02116 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 9.4e-78 294.7 336 54.8
FAN26G2747 Fragaria x ananassa HOM05D003653 ORTHO05D004249 2.7e-77 293.1 341 55.1
Ah.09g228870 Amaranthus hybridus HOM05D003653 ORTHO05D004249 4.7e-77 292.4 336 53.6
FvH4_1g09540 Fragaria vesca HOM05D003653 ORTHO05D004249 4.7e-77 292.4 339 55.5
FAN19G0402 Fragaria x ananassa HOM05D003653 ORTHO05D004249 4.7e-77 292.4 339 55.5
Oeu028863.2 Olea europaea HOM05D003653 ORTHO05D004249 4.7e-77 292.4 337 55.2
Glyma.13G114900 Glycine max HOM05D003653 ORTHO05D004249 8.0e-77 291.6 340 53.2
PSO135G0095 Papaver somniferum HOM05D003653 ORTHO05D004249 8.0e-77 291.6 339 53.7
FAN23G3130 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.4e-76 290.8 341 54.8
Cc06_g12780 Coffea canephora HOM05D003653 ORTHO05D004249 1.8e-76 290.4 338 54.1
Lalb_Chr13g0299181 Lupinus albus HOM05D003653 ORTHO05D004249 2.3e-76 290.0 340 53.2
DCAR_028533 Daucus carota HOM05D003653 ORTHO05D004249 3.0e-76 289.7 339 54.6
TPR.G12688 Trifolium pratense HOM05D003653 ORTHO05D004249 3.0e-76 289.7 338 54.1
CDE08G1372 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 4.0e-76 289.3 334 54.2
Sc18g0002910 Simmondsia chinensis HOM05D003653 ORTHO05D004249 4.0e-76 289.3 336 53.0
FAN28G1145 Fragaria x ananassa HOM05D003653 ORTHO05D004249 5.2e-76 288.9 341 54.5
Lj4g0027638 Lotus japonicus HOM05D003653 ORTHO05D004249 5.2e-76 288.9 338 54.1
Glyma.17G045100 Glycine max HOM05D003653 ORTHO05D004249 8.8e-76 288.1 340 53.5
Os08g0451000 Oryza sativa ssp. japonica HOM05D003653 ORTHO05D004249 1.2e-75 287.7 332 53.6
PSO541G4412 Papaver somniferum HOM05D003653 ORTHO05D004249 1.2e-75 287.7 333 52.9
RcHm_v2.0_Chr2g0096281 Rosa chinensis HOM05D003653 ORTHO05D004249 1.5e-75 287.3 329 55.3
Gohir.A13G188800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 2.0e-75 287.0 335 53.4
Medtr4g124570 Medicago truncatula HOM05D003653 ORTHO05D004249 2.0e-75 287.0 342 53.2
Psat4g019560 Pisum sativum HOM05D003653 ORTHO05D004249 7.5e-75 285.0 341 52.5
arahy.Tifrunner.gnm1.ann1.H5KB4L Arachis hypogaea HOM05D003653 ORTHO05D004249 1.7e-74 283.9 343 52.5
Gorai.013G221900 Gossypium raimondii HOM05D003653 ORTHO05D004249 1.7e-74 283.9 335 53.4
Sabra10G0107200 Salix brachista HOM05D003653 ORTHO05D004249 1.7e-74 283.9 335 53.1
FAN26G0928 Fragaria x ananassa HOM05D003653 ORTHO05D004249 2.2e-74 283.5 352 53.1
Gohir.D13G195800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 6.3e-74 282.0 335 52.8
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 1.1e-73 281.2 340 52.9
C02p31060 Brassica napus HOM05D003653 ORTHO05D004249 4.1e-73 279.3 234 69.2
Phvul.003G126900 Phaseolus vulgaris HOM05D003653 ORTHO05D004249 4.1e-73 279.3 338 53.0
HPP92_012790 Vanilla planifolia HOM05D003653 ORTHO05D004249 4.1e-73 279.3 337 50.7
CSS0010075 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 1.2e-72 277.7 255 65.9
AUR62028329 Chenopodium quinoa HOM05D003653 ORTHO05D004249 2.0e-72 276.9 335 51.6
ClCG08G005060 Citrullus lanatus HOM05D003653 ORTHO05D004249 2.0e-72 276.9 342 52.3
Hund08907 Selenicereus undatus HOM05D003653 ORTHO05D004249 3.5e-72 276.2 330 52.4
CAN.G2030.2 Capsicum annuum HOM05D003653 ORTHO05D004249 1.3e-71 274.2 346 51.4
Solyc04g008640.3 Solanum lycopersicum HOM05D003653 ORTHO05D004249 1.7e-71 273.9 335 52.8
AUR62025332 Chenopodium quinoa HOM05D003653 ORTHO05D004249 2.2e-71 273.5 335 51.0
BcaC08g46765 Brassica carinata HOM05D003653 ORTHO05D004249 2.9e-71 273.1 334 54.2
Sopen04g003800 Solanum pennellii HOM05D003653 ORTHO05D004249 3.8e-71 272.7 335 52.5
PGSC0003DMG400026759 Solanum tuberosum HOM05D003653 ORTHO05D004249 3.8e-71 272.7 342 52.0
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 1.1e-70 271.2 335 51.3
A07p39380 Brassica napus HOM05D003653 ORTHO05D004249 1.9e-70 270.4 340 53.2
Sed0017256 Sechium edule HOM05D003653 ORTHO05D004249 1.9e-70 270.4 334 52.4
CAN.G137.40 Capsicum annuum HOM05D003653 ORTHO05D004249 2.5e-70 270.0 346 51.2
unitig_8.g3535 Utricularia gibba HOM05D003653 ORTHO05D004249 7.2e-70 268.5 342 49.4
CsaV3_5G037140 Cucumis sativus L. HOM05D003653 ORTHO05D004249 1.2e-69 267.7 335 51.3
BolC6t39799H Brassica oleracea HOM05D003653 ORTHO05D004249 1.6e-69 267.3 345 52.5
MELO3C022888.2 Cucumis melo HOM05D003653 ORTHO05D004249 2.7e-69 266.5 335 51.3
Nitab4.5_0001114g0100 Nicotiana tabacum HOM05D003653 ORTHO05D004249 8.0e-69 265.0 338 52.4
Peaxi162Scf00320g00019 Petunia axillaris HOM05D003653 ORTHO05D004249 1.4e-68 264.2 324 54.0
CARHR066480 Cardamine hirsuta HOM05D003653 ORTHO05D004249 4.8e-66 255.8 341 50.7
MBI13_g01694_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 2.5e-62 243.4 338 49.1
SMO196G0011 Selaginella moellendorffii HOM05D003653 ORTHO05D004249 5.5e-62 242.3 320 45.6
Rhsim06G0154000 Rhododendron simsii HOM05D003653 ORTHO05D004249 2.3e-60 236.9 459 41.2
Lj4C921G8 Lonicera japonica HOM05D003653 ORTHO05D004249 6.8e-60 235.3 334 48.8
Lj6C86G4 Lonicera japonica HOM05D003653 ORTHO05D004249 4.4e-59 232.6 330 49.1
Mapoly0109s0022 Marchantia polymorpha HOM05D003653 ORTHO05D004249 9.8e-59 231.5 333 43.8
BraA07t31487Z Brassica rapa HOM05D003653 ORTHO05D004249 4.1e-57 226.1 345 47.8
Pp3c10_7010 Physcomitrium patens HOM05D003653 ORTHO05D004249 1.7e-55 220.7 332 43.1
Lj6C103G5 Lonicera japonica HOM05D003653 ORTHO05D004249 1.4e-52 211.1 426 40.1
Cpa.g.sc82.47 Carica papaya HOM05D003653 ORTHO05D004249 2.3e-52 210.3 277 49.5
Sopen07g006320 Solanum pennellii HOM05D003653 ORTHO05D004249 1.5e-51 207.6 379 42.5
Duzib187G0285 Durio zibethinus HOM05D003653 ORTHO05D004249 1.0e-47 194.9 296 47.6
CAN.G1364.1 Capsicum annuum HOM05D003653 ORTHO05D004249 3.0e-47 193.4 383 39.7
PSO675G3146 Papaver somniferum HOM05D003653 ORTHO05D004249 5.8e-43 179.1 279 44.8
BolC2t09153H Brassica oleracea HOM05D003653 ORTHO05D004249 9.8e-43 178.3 261 49.8
Haze_06171 Corylus avellana HOM05D003653 ORTHO05D004249 8.3e-42 175.3 134 74.6
SEGI_38760 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 1.3e-39 167.9 221 49.3
Actinidia26999 Actinidia chinensis HOM05D003653 ORTHO05D004249 1.7e-39 167.5 134 70.9
Zm00001eb040740 Zea mays HOM05D003653 ORTHO05D004249 6.2e-37 159.1 217 48.4
CBR_g20391 Chara braunii HOM05D003653 ORTHO05D004249 2.0e-35 154.1 255 40.4
Cre03.g203750 Chlamydomonas reinhardtii HOM05D003653 ORTHO05D004249 4.6e-32 142.9 232 40.1
Pp3c14_9870 Physcomitrium patens HOM05D003653 ORTHO05D004249 6.0e-32 142.5 325 34.8
QL02p096270 Quercus lobata HOM05D003653 ORTHO05D004249 3.9e-31 139.8 98 76.5
Lsat_1_v5_gn_2_26321 Lactuca sativa HOM05D003653 ORTHO05D004249 7.3e-30 135.6 118 67.8
Lsat_1_v5_gn_7_58641 Lactuca sativa HOM05D003653 ORTHO05D004249 7.3e-30 135.6 118 67.8
Lsat_1_v5_gn_2_82101 Lactuca sativa HOM05D003653 ORTHO05D004249 2.8e-29 133.7 118 66.9
Lsat_1_v5_gn_4_28660 Lactuca sativa HOM05D003653 ORTHO05D004249 2.8e-29 133.7 117 67.5
Lsat_1_v5_gn_5_93841 Lactuca sativa HOM05D003653 ORTHO05D004249 9.9e-27 125.2 118 64.4
SEGI_01409 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 1.1e-25 121.7 93 67.7
Lsat_1_v5_gn_7_30301 Lactuca sativa HOM05D003653 ORTHO05D004249 1.9e-25 120.9 71 88.7
Haze_16166 Corylus avellana HOM05D003653 ORTHO05D004249 1.6e-24 117.9 99 69.7
Lsat_1_v5_gn_2_18300 Lactuca sativa HOM05D003653 ORTHO05D004249 2.1e-24 117.5 71 87.3
Haze_19192 Corylus avellana HOM05D003653 ORTHO05D004249 1.4e-20 104.8 83 68.7
PRCOL_00003556 Prasinoderma coloniale HOM05D003653 ORTHO05D004249 1.4e-20 104.8 208 32.2
Gohir.D13G136950 Gossypium hirsutum HOM05D003653 ORTHO05D004249 2.6e-19 100.5 96 60.4
Gorai.013G153500 Gossypium raimondii HOM05D003653 ORTHO05D004249 5.8e-19 99.4 91 62.6
Oeu030621.1 Olea europaea HOM05D003653 ORTHO05D004249 6.4e-18 95.9 114 50.9
CAN.G12730.1 Capsicum annuum HOM05D003653 ORTHO05D004249 1.9e-14 84.3 62 66.1
Haze_16165 Corylus avellana HOM05D003653 ORTHO05D004249 7.3e-14 82.4 152 36.2
Nitab4.5_0022446g0010 Nicotiana tabacum HOM05D003653 ORTHO05D004249 9.0e-12 75.5 142 40.1
CAN.G4608.1 Capsicum annuum HOM05D003653 ORTHO05D004249 4.5e-11 73.2 139 40.3
ECA232G2537 Erigeron canadensis HOM05D003653 ORTHO05D004249 2.2e-10 70.9 192 39.1
Lsat_1_v5_gn_6_63001 Lactuca sativa HOM05D003653 ORTHO05D004249 4.9e-10 69.7 42 83.3
VMungo1215G0910 Vigna mungo HOM05D003653 ORTHO05D004249 1.8e-07 61.2 99 42.4
Haze_06172 Corylus avellana HOM05D003653 ORTHO05D004249 7.4e-06 55.8 30 90.0
Nitab4.5_0000055g0010 Nicotiana tabacum HOM05D003653 ORTHO05D004249 9.6e-06 55.5 99 45.5


User provided reference genes

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