Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 3.4e-95 351.7 181 100.0
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 3.9e-14 82.4 75 60.0
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 2.0e-10 70.1 82 51.2
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 2.6e-10 69.7 49 69.4
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 2.6e-10 69.7 162 32.7
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 3.4e-10 69.3 47 70.2
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 4.4e-10 68.9 42 78.6
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 4.4e-10 68.9 49 69.4
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 4.4e-10 68.9 49 69.4
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 4.4e-10 68.9 43 74.4
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 4.4e-10 68.9 42 78.6
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 5.8e-10 68.6 49 71.4
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 5.8e-10 68.6 49 67.3
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 7.6e-10 68.2 67 56.7
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 7.6e-10 68.2 75 52.0
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 9.9e-10 67.8 76 53.9
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 9.9e-10 67.8 42 73.8
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 9.9e-10 67.8 43 72.1
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 9.9e-10 67.8 43 72.1
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 9.9e-10 67.8 43 74.4
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 9.9e-10 67.8 42 76.2
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 1.3e-09 67.4 42 73.8
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.3e-09 67.4 43 69.8
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 1.3e-09 67.4 49 65.3
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 1.3e-09 67.4 42 73.8
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.3e-09 67.4 42 76.2
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 1.7e-09 67.0 42 73.8
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.7e-09 67.0 42 73.8
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 1.7e-09 67.0 42 73.8
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 1.7e-09 67.0 42 76.2
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.7e-09 67.0 42 73.8
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 2.2e-09 66.6 49 65.3
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 2.9e-09 66.2 67 55.2
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.9e-09 66.2 67 55.2
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.9e-09 66.2 67 55.2
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 2.9e-09 66.2 55 61.8
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 2.9e-09 66.2 49 63.3
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.9e-09 66.2 42 71.4
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 2.9e-09 66.2 67 55.2
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 2.9e-09 66.2 67 55.2
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 3.8e-09 65.9 49 65.3
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 3.8e-09 65.9 58 60.3
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 4.9e-09 65.5 61 59.0
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 4.9e-09 65.5 43 69.8
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 4.9e-09 65.5 45 75.6
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.4e-09 65.1 43 69.8
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 6.4e-09 65.1 43 69.8
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 6.4e-09 65.1 42 69.0
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 6.4e-09 65.1 42 69.0
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 6.4e-09 65.1 42 71.4
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 6.4e-09 65.1 41 73.2
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 8.4e-09 64.7 65 55.4
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 8.4e-09 64.7 43 69.8
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 8.4e-09 64.7 42 71.4
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 8.4e-09 64.7 49 65.3
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 8.4e-09 64.7 43 69.8
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 8.4e-09 64.7 74 50.0
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.1e-08 64.3 68 50.0
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 1.1e-08 64.3 43 65.1
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 1.1e-08 64.3 67 50.7
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 1.1e-08 64.3 43 67.4
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 1.1e-08 64.3 72 52.8
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 1.4e-08 63.9 48 66.7
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 1.4e-08 63.9 56 60.7
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 1.4e-08 63.9 67 52.2
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 1.4e-08 63.9 41 73.2
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 1.4e-08 63.9 49 67.3
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.9e-08 63.5 63 54.0
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 1.9e-08 63.5 74 47.3
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 1.9e-08 63.5 74 47.3
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 1.9e-08 63.5 51 60.8
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 1.9e-08 63.5 51 60.8
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 1.9e-08 63.5 42 71.4
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 1.9e-08 63.5 41 68.3
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 2.4e-08 63.2 51 60.8
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 2.4e-08 63.2 51 60.8
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 2.4e-08 63.2 74 51.4
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 2.4e-08 63.2 49 63.3
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 2.4e-08 63.2 77 46.8
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 3.2e-08 62.8 45 66.7
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 3.2e-08 62.8 45 66.7
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 3.2e-08 62.8 45 66.7
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 3.2e-08 62.8 67 50.7
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 3.2e-08 62.8 49 63.3
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 3.2e-08 62.8 62 58.1
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 5.4e-08 62.0 49 63.3
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.4e-08 62.0 43 67.4
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 5.4e-08 62.0 43 67.4
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 7.1e-08 61.6 42 64.3
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 7.1e-08 61.6 41 68.3
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 7.1e-08 61.6 42 69.0
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 9.3e-08 61.2 51 62.7
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 9.3e-08 61.2 67 53.7
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 9.3e-08 61.2 49 57.1
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 9.3e-08 61.2 42 66.7
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 9.3e-08 61.2 67 53.7
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.2e-07 60.8 106 39.6
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 1.2e-07 60.8 40 72.5
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 1.6e-07 60.5 62 46.8
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 1.6e-07 60.5 62 46.8
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 1.6e-07 60.5 49 61.2
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 2.1e-07 60.1 48 64.6
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 2.1e-07 60.1 55 58.2
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 2.1e-07 60.1 45 62.2
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 2.1e-07 60.1 42 69.0
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 3.5e-07 59.3 48 58.3
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 3.5e-07 59.3 49 59.2
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 3.5e-07 59.3 55 54.5
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 4.6e-07 58.9 43 62.8
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.0e-07 58.5 43 65.1
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 6.0e-07 58.5 67 50.7
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 6.0e-07 58.5 67 49.3
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 7.8e-07 58.2 42 69.0
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 1.0e-06 57.8 48 60.4
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 1.3e-06 57.4 50 60.0
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 1.3e-06 57.4 49 59.2
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.3e-06 57.4 42 61.9
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.3e-06 57.4 48 64.6
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.3e-06 57.4 48 64.6
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 2.3e-06 56.6 42 59.5
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.3e-06 56.6 43 65.1
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 6.6e-06 55.1 65 50.8
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 6.6e-06 55.1 49 53.1
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 8.7e-06 54.7 43 58.1


User provided reference genes

Program Settings