Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 2.5e-145 518.8 281 100.0
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 4.5e-110 401.7 281 76.9
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 2.6e-94 349.4 281 69.4
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 1.9e-92 343.2 286 68.5
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 2.3e-90 336.3 281 69.8
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 3.0e-90 335.9 281 69.8
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 5.2e-90 335.1 283 67.5
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 2.0e-89 333.2 290 68.3
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 2.0e-89 333.2 290 68.3
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 3.3e-89 332.4 289 65.7
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 9.7e-89 330.9 289 68.5
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.4e-87 327.0 284 65.1
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 2.4e-87 326.2 278 69.1
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 5.3e-87 325.1 278 68.7
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 1.2e-86 323.9 282 68.4
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 2.0e-86 323.2 278 66.2
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 2.6e-86 322.8 286 69.6
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 5.9e-86 321.6 284 65.1
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 5.9e-86 321.6 282 64.9
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 5.9e-86 321.6 282 64.9
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.3e-85 320.5 282 64.5
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 1.7e-85 320.1 285 64.9
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 1.7e-85 320.1 285 66.7
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 3.8e-85 318.9 286 68.5
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 3.8e-85 318.9 284 65.1
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 5.0e-85 318.5 289 63.7
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 1.1e-84 317.4 283 64.3
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 1.5e-84 317.0 296 63.9
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 1.9e-84 316.6 307 60.9
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 1.9e-84 316.6 285 66.3
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 9.4e-84 314.3 282 64.5
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 2.1e-83 313.2 280 67.1
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 3.6e-83 312.4 307 60.3
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 3.6e-83 312.4 284 65.8
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 3.6e-83 312.4 284 65.8
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 6.1e-83 311.6 289 63.7
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 8.0e-83 311.2 282 63.5
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.0e-82 310.8 284 64.1
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 2.3e-82 309.7 283 65.7
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 4.0e-82 308.9 255 70.2
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 6.7e-82 308.1 282 63.8
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 2.0e-81 306.6 303 58.4
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 1.3e-80 303.9 252 69.8
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 1.1e-79 300.8 283 61.5
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 1.1e-79 300.8 286 62.9
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 3.1e-79 299.3 277 65.0
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 1.2e-78 297.4 225 74.7
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 5.9e-78 295.0 279 62.0
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 6.5e-77 291.6 280 63.6
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 3.2e-76 289.3 320 60.3
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 1.2e-75 287.3 283 60.4
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 1.2e-75 287.3 280 59.6
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 2.7e-75 286.2 283 61.5
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 3.6e-75 285.8 282 58.9
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 6.1e-75 285.0 287 62.4
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 8.0e-75 284.6 282 62.4
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 1.0e-74 284.3 213 76.5
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 1.4e-74 283.9 284 62.0
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 1.4e-74 283.9 284 62.0
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 1.4e-74 283.9 284 62.0
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 1.8e-74 283.5 280 61.4
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 3.0e-74 282.7 287 62.0
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 5.2e-74 282.0 306 55.9
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 1.2e-73 280.8 281 61.6
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.2e-73 280.8 282 60.3
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 1.2e-73 280.8 200 73.0
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 2.0e-73 280.0 284 57.0
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 2.6e-73 279.6 284 62.3
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 3.4e-73 279.3 282 60.6
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 5.7e-73 278.5 282 60.3
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 9.8e-73 277.7 287 57.1
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.3e-72 277.3 281 60.1
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.3e-72 277.3 281 60.1
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 2.8e-72 276.2 271 59.0
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 2.8e-72 276.2 284 58.5
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 8.3e-72 274.6 275 60.0
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 8.3e-72 274.6 280 60.4
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.1e-71 274.2 302 57.3
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 1.4e-71 273.9 283 60.4
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 2.4e-71 273.1 276 59.8
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 4.1e-71 272.3 304 55.3
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 7.0e-71 271.6 279 59.1
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 7.0e-71 271.6 259 63.3
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 9.1e-71 271.2 299 60.2
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 1.6e-70 270.4 295 58.0
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 1.6e-70 270.4 271 60.5
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 2.0e-70 270.0 276 59.4
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 5.9e-70 268.5 277 59.6
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 5.9e-70 268.5 277 59.6
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 7.7e-70 268.1 277 58.8
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 1.0e-69 267.7 288 57.3
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 2.3e-69 266.5 271 59.8
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 5.0e-69 265.4 281 59.4
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 5.0e-69 265.4 284 58.8
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 1.5e-68 263.8 287 57.1
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 1.9e-68 263.5 229 65.5
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 2.5e-68 263.1 171 82.5
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 3.2e-68 262.7 243 68.3
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 5.5e-68 261.9 282 56.0
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 7.2e-68 261.5 283 56.2
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 3.6e-67 259.2 225 65.8
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 8.0e-67 258.1 294 56.1
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 1.8e-66 256.9 187 73.8
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 1.8e-66 256.9 282 56.7
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 2.3e-66 256.5 206 69.9
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 3.0e-66 256.1 283 56.9
CAN.G160.27 Capsicum annuum HOM05D004690 ORTHO05D005527 2.6e-65 253.1 171 80.1
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 6.3e-64 248.4 341 49.0
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 2.0e-62 243.4 299 50.8
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 3.5e-62 242.7 186 68.3
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 3.8e-61 239.2 222 59.0
Oeu054265.1 Olea europaea HOM05D004690 ORTHO05D005527 3.6e-59 232.6 151 78.1
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 1.0e-58 231.1 292 52.7
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 1.4e-58 230.7 292 53.4
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 1.5e-57 227.3 184 64.1
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 2.6e-57 226.5 281 52.7
CDE05G2888 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 1.8e-55 220.3 187 65.2
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 7.0e-55 218.4 217 59.4
Nn8g39977 Nelumbo nucifera HOM05D004690 ORTHO05D005527 7.8e-54 214.9 136 79.4
Os02g0794400 Oryza sativa ssp. japonica HOM05D004690 ORTHO05D005527 4.3e-52 209.1 184 62.5
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 1.4e-50 204.1 241 49.4
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 4.9e-48 195.7 292 44.2
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 1.1e-47 194.5 291 44.0
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.4e-47 194.1 223 51.1
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 2.4e-47 193.4 216 51.9
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 3.9e-45 186.0 225 48.4
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 1.8e-42 177.2 205 48.8
Aa31LG3G8690 Aethionema arabicum HOM05D004690 ORTHO05D005527 1.9e-39 167.2 114 71.1
Manes.06G030800 Manihot esculenta HOM05D004690 ORTHO05D005527 5.4e-39 165.6 109 77.1
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 6.0e-38 162.2 242 40.5
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 1.1e-36 157.9 171 48.5
Nn8g39976 Nelumbo nucifera HOM05D004690 ORTHO05D005527 1.9e-36 157.1 142 67.6
Ca_21146_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 2.8e-35 153.3 104 70.2
Actinidia38313 Actinidia chinensis HOM05D004690 ORTHO05D005527 5.8e-33 145.6 238 46.6
Actinidia24377 Actinidia chinensis HOM05D004690 ORTHO05D005527 1.0e-29 134.8 104 70.2
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 1.0e-29 134.8 204 37.7
Carub.0007s0984 Capsella rubella HOM05D004690 ORTHO05D005527 1.9e-28 130.6 184 52.2
Hma1.2p1_0028F.1_g017670 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 4.7e-27 125.9 153 51.0
PGSC0003DMG400017027 Solanum tuberosum HOM05D004690 ORTHO05D005527 6.2e-27 125.6 67 91.0
SEGI_13735 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 9.0e-26 121.7 131 51.9
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 1.1e-23 114.8 91 64.8
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 7.8e-22 108.6 159 37.1
SEGI_33455 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 6.2e-19 99.0 148 46.6
HanXRQChr10g0314901 Helianthus annuus HOM05D000214 ORTHO05D000131 9.9e-17 91.7 82 62.2
Cre01.g001550 Chlamydomonas reinhardtii HOM05D004690 ORTHO05D005527 2.2e-16 90.5 144 34.0
BcaB06g27963 Brassica carinata HOM05D004690 ORTHO05D005527 6.4e-16 89.0 71 67.6
Dinv41359 Davidia involucrata HOM05D004690 ORTHO05D005527 1.3e-13 81.3 77 61.0
Ca_21142_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 8.7e-13 78.6 134 46.3
FAN23G1872 Fragaria x ananassa HOM05D004690 ORTHO05D005527 3.7e-11 73.2 133 44.4
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 1.2e-09 68.2 181 30.4
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 2.0e-09 67.4 165 27.3
A02p43620 Brassica napus HOM05D004690 ORTHO05D005527 2.6e-09 67.0 44 70.5
A02p43630 Brassica napus HOM05D004690 ORTHO05D005527 2.6e-09 67.0 44 70.5
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 7.6e-09 65.5 186 31.2
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 9.9e-09 65.1 165 31.5
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 9.9e-09 65.1 160 30.6
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 3.8e-08 63.2 221 26.2
BolC2t11481H Brassica oleracea HOM05D004690 ORTHO05D005527 6.4e-08 62.4 38 76.3
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 1.9e-07 60.8 146 28.8
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.9e-07 60.8 185 24.9
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 2.4e-07 60.5 113 33.6
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.4e-07 60.5 113 33.6
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.4e-07 60.5 113 33.6
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 2.4e-07 60.5 195 28.7
Oeu054266.1 Olea europaea HOM05D004690 ORTHO05D005527 3.2e-07 60.1 133 39.8
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 4.2e-07 59.7 134 29.1
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 7.1e-07 58.9 113 32.7
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 7.1e-07 58.9 216 26.4
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 7.1e-07 58.9 166 29.5
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 9.3e-07 58.5 133 32.3
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 2.1e-06 57.4 227 24.7
C06p03190 Brassica napus HOM05D004690 ORTHO05D005527 2.1e-06 57.4 37 70.3
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 2.1e-06 57.4 195 26.7
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 2.1e-06 57.4 171 25.1
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.1e-06 57.4 113 38.9
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 2.1e-06 57.4 113 36.3
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 2.7e-06 57.0 173 25.4
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 4.6e-06 56.2 181 30.9
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 4.6e-06 56.2 160 25.6
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 4.6e-06 56.2 129 30.2
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 4.6e-06 56.2 169 27.2
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 6.0e-06 55.8 151 28.5
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 6.0e-06 55.8 96 32.3
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 6.0e-06 55.8 130 30.0
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 7.9e-06 55.5 168 26.8


User provided reference genes

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