Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 0.0e+00 1246.9 646 100.0
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.2e-302 1042.7 649 81.7
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.0e-274 949.9 649 75.3
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 5.6e-273 944.1 641 77.5
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 8.1e-264 913.7 646 73.2
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 2.6e-262 908.7 647 74.5
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 1.3e-261 906.4 647 72.3
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 4.9e-261 904.4 647 72.6
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 7.3e-257 890.6 660 70.5
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 1.2e-256 889.8 646 72.3
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.1e-255 886.7 646 73.5
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 2.4e-255 885.6 648 71.1
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 2.0e-254 882.5 648 71.5
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 7.6e-254 880.6 648 71.0
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 8.4e-253 877.1 649 71.3
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.9e-252 875.9 652 70.2
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 2.4e-252 875.5 648 70.4
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 3.2e-252 875.2 648 69.8
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 5.4e-252 874.4 643 71.9
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 1.2e-251 873.2 649 70.1
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 6.6e-250 867.5 659 69.5
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 3.3e-249 865.1 662 69.6
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 4.3e-249 864.8 648 69.1
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 5.6e-249 864.4 646 71.2
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 7.3e-249 864.0 648 69.9
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 9.6e-249 863.6 646 70.3
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 1.3e-248 863.2 649 69.6
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 6.2e-248 860.9 643 72.6
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 1.2e-246 856.7 645 71.0
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 2.0e-246 855.9 646 71.8
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 5.8e-246 854.4 649 70.3
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 9.9e-246 853.6 649 70.0
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 9.9e-246 853.6 644 71.6
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 4.9e-245 851.3 649 69.5
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 5.4e-244 847.8 646 68.9
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 7.1e-244 847.4 649 69.3
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 3.5e-243 845.1 650 68.2
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 1.5e-241 839.7 646 68.7
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 5.3e-239 831.2 643 70.6
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 1.5e-238 829.7 662 67.1
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 2.6e-238 828.9 646 68.1
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 5.8e-238 827.8 659 65.4
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 1.7e-237 826.2 652 66.9
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 2.9e-237 825.5 653 66.9
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 2.9e-237 825.5 653 66.9
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 6.4e-237 824.3 645 68.8
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 5.4e-236 821.2 642 67.1
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.2e-235 820.1 646 68.7
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 2.1e-235 819.3 649 66.7
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 2.3e-234 815.8 642 68.4
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 8.7e-234 813.9 642 66.8
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 5.6e-233 811.2 642 67.9
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.1e-232 809.3 642 68.1
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.8e-231 806.2 489 81.4
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.8e-231 806.2 647 65.1
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 2.6e-230 802.4 644 67.5
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 1.0e-229 800.4 661 64.8
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.0e-229 800.4 647 64.8
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 8.4e-229 797.3 654 63.9
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 8.4e-229 797.3 646 65.8
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 8.4e-229 797.3 644 66.3
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 3.5e-227 792.0 663 65.3
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 6.0e-227 791.2 650 63.8
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 7.9e-227 790.8 796 56.7
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 8.7e-226 787.3 659 66.9
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 1.1e-225 786.9 511 77.7
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.9e-225 786.2 645 66.7
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 3.7e-224 781.9 672 63.8
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.1e-223 780.4 646 67.6
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 1.4e-223 780.0 647 63.4
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 1.4e-223 780.0 650 63.1
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 6.9e-223 777.7 659 62.2
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 3.4e-222 775.4 650 64.5
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 2.9e-221 772.3 644 64.0
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 8.4e-221 770.8 609 67.2
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 1.1e-220 770.4 651 62.7
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 1.1e-220 770.4 642 64.5
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 4.2e-220 768.5 646 64.4
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 6.1e-219 764.6 651 63.7
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 7.9e-219 764.2 651 62.2
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 1.3e-218 763.5 652 62.9
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 1.9e-217 759.6 648 65.0
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 3.3e-217 758.8 646 64.1
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 4.3e-217 758.4 654 62.2
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 4.3e-217 758.4 655 61.1
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 5.7e-217 758.1 656 61.1
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 9.7e-217 757.3 649 62.6
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 9.0e-215 750.7 653 61.9
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 1.2e-214 750.4 646 61.1
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 1.2e-214 750.4 634 63.9
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 5.9e-214 748.0 646 61.0
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 1.0e-213 747.3 650 60.9
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 5.0e-213 745.0 646 62.8
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 5.5e-212 741.5 647 60.7
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 7.2e-212 741.1 646 60.7
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 7.2e-212 741.1 646 60.7
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 3.0e-210 735.7 569 68.2
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 1.1e-209 733.8 526 70.3
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 1.5e-209 733.4 644 62.7
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.7e-208 729.9 652 61.7
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 2.8e-208 729.2 660 59.8
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 4.8e-208 728.4 650 62.3
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 5.9e-206 721.5 520 70.8
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 1.9e-204 716.5 461 77.0
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 7.9e-203 711.1 659 59.3
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 8.2e-200 701.0 657 58.0
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 1.1e-199 700.7 648 57.7
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 4.4e-193 678.7 682 55.4
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 1.1e-191 674.1 646 56.7
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 1.6e-190 670.2 565 62.3
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 1.0e-186 657.5 467 72.6
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 6.8e-186 654.8 519 63.6
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 2.4e-183 646.4 464 71.3
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 1.4e-178 630.6 653 55.3
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 9.8e-177 624.4 400 75.5
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 5.4e-175 618.6 489 63.4
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 7.5e-169 598.2 459 67.5
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 2.2e-168 596.7 660 49.4
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 2.2e-168 596.7 664 53.2
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 2.9e-168 596.3 649 53.5
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 1.6e-166 590.5 364 77.2
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 2.8e-163 579.7 648 50.6
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 5.2e-162 575.5 680 47.8
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 7.0e-159 565.1 653 49.0
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 6.0e-158 562.0 657 48.6
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 3.3e-148 529.6 317 79.8
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 2.4e-143 513.5 315 77.1
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 1.5e-140 504.2 302 78.8
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 7.3e-132 475.3 315 72.4
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 2.1e-126 457.2 561 47.4
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 6.6e-125 452.2 302 71.2
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 2.3e-109 400.6 301 68.8
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 3.2e-103 380.2 259 69.5
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 3.2e-103 380.2 259 69.5
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 4.2e-71 273.5 228 66.7
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 5.9e-57 226.5 343 38.5
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 8.9e-45 186.0 276 48.6
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 4.9e-43 180.3 192 56.2
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 5.2e-37 160.2 92 92.4
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 2.7e-33 147.9 178 48.9
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 8.6e-32 142.9 321 34.3
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 1.5e-31 142.1 228 43.9
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 4.0e-29 134.0 87 71.3
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 8.9e-29 132.9 342 34.5
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.7e-25 121.3 186 44.6
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 1.7e-16 92.0 165 43.0
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 1.9e-15 88.6 165 41.8
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 9.6e-15 86.3 165 38.2
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 2.1e-14 85.1 163 40.5
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 6.9e-13 80.1 127 45.7
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 6.4e-11 73.6 68 60.3
PGSC0003DMG401024092 Solanum tuberosum HOM05D004716 ORTHO05D005646 4.3e-07 60.8 167 31.7


User provided reference genes

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