Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 4489.1 2459 100.0
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 2835.8 2514 68.9
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 2478.7 2513 61.6
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 2337.4 2305 63.1
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 2311.6 2516 59.2
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2165.6 2519 57.3
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 2152.9 2518 55.2
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2132.1 2525 56.1
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 2100.9 2515 55.0
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2098.9 2460 56.0
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2033.1 2517 54.1
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2018.0 2546 53.3
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 2010.0 2528 53.4
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2009.6 2505 53.9
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1976.4 2513 52.8
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1974.5 2513 52.8
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1969.9 2518 52.9
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1951.4 2517 53.1
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1944.5 2216 58.1
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 1935.2 2521 52.6
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 1923.7 2528 51.7
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1900.9 2517 51.0
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1895.2 2514 51.1
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1889.0 2510 52.2
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1884.4 2515 52.0
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1883.6 2566 51.4
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1883.6 2464 52.7
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1882.5 2514 51.1
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1865.1 2512 51.5
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1860.5 2508 52.2
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1856.6 2458 51.7
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1852.8 2504 51.5
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1848.6 2494 51.6
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1817.7 2377 52.7
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1815.0 2512 49.8
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1811.2 2442 51.7
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1805.0 2512 50.2
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1803.5 2524 49.8
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1797.3 2486 51.2
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1785.8 2524 49.8
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1778.8 2450 50.6
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1768.8 2523 49.6
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1763.4 2544 50.2
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1762.7 2411 49.6
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1760.3 2011 57.9
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1726.8 2569 47.9
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1694.5 2483 49.7
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1692.2 2443 49.1
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1689.1 2523 48.2
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1688.3 2456 50.1
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1682.5 2486 49.5
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1679.1 2514 47.6
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1674.8 2438 48.7
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1673.3 2505 47.5
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1673.3 2518 47.9
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1651.3 2447 48.6
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1647.9 2445 48.0
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1646.7 2444 47.4
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1644.8 2529 48.0
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1634.4 2475 49.3
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1630.2 2419 49.3
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1622.4 2514 48.2
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1621.7 2495 47.2
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1621.3 2509 47.7
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1608.6 2637 45.2
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1585.9 2331 48.4
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1580.8 2509 46.1
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1572.0 2474 47.6
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1555.4 2384 47.2
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1540.8 2508 45.5
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1527.7 2560 45.4
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1521.5 2488 45.5
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1501.5 2408 45.8
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1494.6 2504 45.2
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1493.4 2457 46.7
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1492.6 2504 45.3
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1490.3 2463 46.1
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1481.5 1903 52.4
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1457.2 2381 44.2
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1451.0 2497 44.6
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1430.2 2400 45.8
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1425.6 2382 43.7
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1422.5 2528 42.8
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1422.5 2450 45.3
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1422.1 1257 67.7
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1402.1 2582 44.5
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1385.9 2506 43.7
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1355.5 2403 44.0
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1305.0 2428 42.1
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1263.8 2410 43.2
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1238.0 2433 42.5
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1205.7 2436 41.5
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1142.9 2420 41.0
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1094.3 2417 39.8
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1075.8 2422 39.5
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 9.8e-310 1068.1 1788 45.0
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 2.8e-309 1066.6 2416 39.5
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 8.5e-306 1055.0 2357 39.4
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 5.2e-303 1045.8 974 65.7
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 7.7e-299 1031.9 2447 38.1
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 4.2e-297 1026.2 2330 39.6
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 3.3e-273 946.8 980 58.4
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 1.8e-271 941.0 2338 37.1
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 1.3e-269 934.9 1735 43.2
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 6.4e-261 906.0 2253 37.6
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 1.1e-257 895.2 2505 36.2
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 1.8e-255 887.9 2700 36.3
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 1.4e-220 771.9 1093 50.0
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 6.7e-210 736.5 2469 33.0
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 5.0e-205 720.3 1044 50.2
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.1e-204 719.2 1857 37.0
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 6.5e-197 693.3 1725 34.7
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 3.2e-196 691.0 2347 33.5
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.2e-190 672.5 700 58.9
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.0e-181 642.9 944 49.2
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 5.2e-178 630.6 2347 33.1
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 4.1e-175 620.9 2278 33.5
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 4.1e-175 620.9 2278 33.5
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 4.5e-174 617.5 2352 32.6
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 2.3e-170 605.1 2322 32.9
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 6.2e-155 553.9 497 66.4
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 1.5e-129 469.5 514 56.4
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 1.2e-121 443.4 361 63.7
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 2.0e-121 442.6 752 43.4
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 3.2e-119 435.3 1836 31.3
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 1.3e-115 423.3 795 39.4
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 3.9e-109 401.7 1151 32.9
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 6.7e-109 401.0 1342 35.2
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 5.0e-104 384.8 2773 28.3
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 4.8e-99 368.2 593 46.2
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.8e-83 315.8 2726 27.9
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 9.1e-74 284.3 985 31.7
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.0e-73 283.1 1032 34.1
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 8.0e-70 271.2 296 52.0
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.7e-65 256.1 2700 27.9
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.4e-58 233.8 2683 27.4
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 1.0e-53 217.6 333 41.7
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 3.1e-45 189.5 2445 25.6
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 5.2e-45 188.7 251 50.2
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 3.7e-43 182.6 251 49.4
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 8.3e-43 181.4 560 32.9
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 2.6e-36 159.8 511 35.0
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 1.3e-35 157.5 204 50.0
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.1e-34 154.5 192 51.0
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 1.4e-34 154.1 444 33.1
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 3.9e-32 146.0 213 45.1
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 5.2e-29 135.6 264 37.5
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 7.1e-26 125.2 207 44.4
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 2.1e-22 113.6 250 37.2
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 4.0e-21 109.4 229 40.6
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 5.8e-20 105.5 288 34.7
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 7.6e-20 105.1 2028 25.6
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 3.3e-15 89.7 164 41.5
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 4.2e-10 72.8 71 57.7
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 2.1e-09 70.5 68 58.8
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 9.6e-07 61.6 235 25.1


User provided reference genes

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