Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 9.5e-89 330.1 161 100.0
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.3e-79 298.9 161 89.4
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.2e-67 260.0 161 78.3
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.2e-64 250.0 159 72.3
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 2.9e-61 238.8 157 72.6
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 6.4e-61 237.7 157 73.2
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 3.2e-60 235.3 162 72.2
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 7.8e-59 230.7 163 68.7
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 5.1e-58 228.0 163 68.1
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 1.9e-57 226.1 162 66.7
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 3.3e-57 225.3 157 69.4
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 3.4e-54 215.3 164 62.8
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 4.5e-54 214.9 155 69.7
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 4.5e-54 214.9 164 62.8
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 4.5e-54 214.9 133 76.7
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 7.6e-54 214.2 162 64.2
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 2.9e-53 212.2 159 64.2
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 1.1e-52 210.3 159 66.0
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.4e-52 209.9 164 61.6
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 2.1e-51 206.1 138 69.6
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 2.7e-51 205.7 160 62.5
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 3.5e-51 205.3 152 63.8
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 3.5e-51 205.3 159 66.7
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 1.3e-50 203.4 160 65.6
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 6.7e-50 201.1 167 62.3
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 1.9e-49 199.5 160 66.2
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 2.5e-49 199.1 164 64.0
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 5.6e-49 198.0 154 59.7
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 7.4e-49 197.6 167 61.7
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 9.6e-49 197.2 162 64.2
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 2.8e-48 195.7 181 58.6
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 8.1e-48 194.1 155 63.9
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 1.1e-47 193.7 154 64.3
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.1e-47 193.7 164 58.5
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.1e-47 193.7 164 58.5
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 1.8e-47 193.0 146 68.5
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 4.0e-47 191.8 162 56.8
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 4.0e-47 191.8 153 62.1
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 2.0e-46 189.5 154 62.3
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 2.0e-46 189.5 162 59.9
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 9.9e-46 187.2 154 62.3
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 1.7e-45 186.4 156 62.2
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 4.9e-45 184.9 138 65.9
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 6.4e-45 184.5 167 58.1
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 1.1e-44 183.7 162 60.5
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 2.4e-44 182.6 129 67.4
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 3.2e-44 182.2 164 56.7
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 5.5e-44 181.4 138 64.5
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 9.3e-44 180.6 126 68.3
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 6.0e-43 177.9 161 57.8
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 6.0e-43 177.9 156 59.6
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 6.0e-43 177.9 156 59.6
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.0e-42 177.2 161 56.5
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 1.1e-41 173.7 148 58.1
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.5e-41 173.3 162 60.5
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 3.3e-41 172.2 133 62.4
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 5.6e-41 171.4 175 53.7
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 7.4e-41 171.0 175 53.7
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 9.6e-41 170.6 167 61.1
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 9.6e-41 170.6 159 54.1
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.3e-40 170.2 156 58.3
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 2.1e-40 169.5 138 62.3
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 8.2e-40 167.5 150 54.7
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 1.4e-39 166.8 153 52.9
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 5.3e-39 164.9 157 54.8
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 2.6e-38 162.5 97 75.3
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 3.4e-38 162.2 159 51.6
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 4.5e-38 161.8 156 57.1
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 5.8e-38 161.4 156 57.1
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.0e-37 160.6 155 58.1
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 3.8e-37 158.7 98 73.5
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 3.8e-37 158.7 149 55.7
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 1.2e-35 153.7 136 59.6
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 6.0e-35 151.4 148 57.4
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 6.0e-35 151.4 180 45.6
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 1.0e-34 150.6 147 54.4
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 3.9e-34 148.7 147 55.1
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 5.1e-34 148.3 151 55.0
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 6.7e-34 147.9 150 50.7
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 1.5e-33 146.7 157 53.5
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 4.3e-33 145.2 150 54.0
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 7.4e-33 144.4 140 54.3
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 1.3e-32 143.7 127 55.9
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 1.3e-32 143.7 159 53.5
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 2.8e-32 142.5 155 51.0
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 8.2e-32 141.0 140 54.3
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 1.8e-31 139.8 160 53.1
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 4.1e-31 138.7 152 52.6
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.2e-30 137.1 153 55.6
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 3.4e-30 135.6 129 56.6
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 4.5e-30 135.2 127 53.5
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 8.5e-29 131.0 142 51.4
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 8.5e-29 131.0 126 54.8
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 5.5e-28 128.3 147 46.9
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 7.2e-28 127.9 164 45.7
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 9.3e-28 127.5 142 50.7
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 3.6e-27 125.6 148 49.3
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 4.6e-27 125.2 174 43.7
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.0e-26 124.0 157 46.5
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 1.8e-26 123.2 104 60.6
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 2.3e-26 122.9 150 48.7
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 3.9e-26 122.1 82 70.7
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 3.9e-26 122.1 156 46.2
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 1.5e-25 120.2 126 52.4
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 1.9e-25 119.8 144 47.9
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 4.3e-25 118.6 146 47.3
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 5.7e-25 118.2 140 47.1
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 5.7e-25 118.2 140 47.1
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 5.7e-25 118.2 133 48.9
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 7.4e-25 117.9 144 47.2
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 7.4e-25 117.9 144 46.5
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 1.3e-24 117.1 156 42.9
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.7e-24 116.7 152 44.7
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.7e-24 116.7 152 44.7
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 2.8e-24 115.9 125 52.0
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 1.8e-23 113.2 83 59.0
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 4.5e-22 108.6 145 44.1
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 1.0e-18 97.4 127 44.9
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 1.4e-18 97.1 113 46.0
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 3.0e-18 95.9 149 40.9
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 3.0e-18 95.9 141 41.8
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 5.1e-18 95.1 89 52.8
Zm00001eb035190 Zea mays HOM05D005114 ORTHO05D006301 5.1e-18 95.1 152 37.5
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 9.7e-17 90.9 125 43.2
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 9.7e-17 90.9 143 39.2
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 3.7e-16 89.0 53 67.9
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.8e-15 86.7 126 43.7
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.8e-15 86.7 64 62.5
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 2.4e-15 86.3 118 45.8
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 3.1e-15 85.9 130 41.5
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 9.1e-15 84.3 118 44.9
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.2e-14 84.0 125 42.4
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 2.6e-14 82.8 118 44.1
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 2.6e-14 82.8 118 44.1
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 2.6e-14 82.8 118 44.1
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 1.3e-13 80.5 116 42.2
RcHm_v2.0_Chr4g0418711 Rosa chinensis HOM05D005114 ORTHO05D006301 2.2e-13 79.7 83 55.4
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 2.9e-13 79.3 124 43.5
SEGI_30505 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.1e-12 77.4 80 45.0
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 3.2e-12 75.9 43 79.1
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 5.5e-12 75.1 60 63.3
Zm00001eb199930 Zea mays HOM05D005114 ORTHO05D006301 2.1e-11 73.2 150 32.0
SEGI_39678 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 6.7e-10 68.2 83 41.0
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.1e-09 67.4 116 37.1
SEGI_36834 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 2.2e-08 63.2 81 42.0


User provided reference genes

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