Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 4.7e-55 217.6 110 100.0
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 7.3e-32 140.6 103 73.8
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 2.3e-17 92.4 108 53.7
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 3.0e-17 92.0 87 63.2
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 3.9e-17 91.7 84 58.3
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 1.5e-16 89.7 95 52.6
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 7.3e-16 87.4 98 52.0
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 2.8e-15 85.5 100 50.0
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 2.8e-15 85.5 65 66.2
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 6.2e-15 84.3 101 51.5
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 8.1e-15 84.0 93 52.7
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 1.1e-14 83.6 55 72.7
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 1.1e-14 83.6 91 54.9
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 2.4e-14 82.4 89 50.6
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 2.4e-14 82.4 108 51.9
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 3.1e-14 82.0 110 50.0
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 3.1e-14 82.0 107 47.7
Eucgr.G01220 Eucalyptus grandis HOM05D007107 ORTHO05D009198 5.2e-14 81.3 105 43.8
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 5.2e-14 81.3 95 45.3
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 5.2e-14 81.3 107 47.7
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 9.0e-14 80.5 71 60.6
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 1.2e-13 80.1 89 56.2
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 1.5e-13 79.7 101 52.5
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 2.0e-13 79.3 101 49.5
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 2.6e-13 79.0 98 51.0
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 2.6e-13 79.0 90 52.2
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 3.4e-13 78.6 68 63.2
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 4.4e-13 78.2 105 50.5
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 5.8e-13 77.8 71 60.6
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 7.6e-13 77.4 113 46.9
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 9.9e-13 77.0 67 62.7
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 9.9e-13 77.0 67 62.7
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 9.9e-13 77.0 108 48.1
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 9.9e-13 77.0 66 57.6
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 9.9e-13 77.0 95 49.5
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 9.9e-13 77.0 95 49.5
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 1.7e-12 76.3 84 58.3
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 2.2e-12 75.9 133 42.1
DCAR_001690 Daucus carota HOM05D007107 ORTHO05D009198 2.2e-12 75.9 97 46.4
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 2.2e-12 75.9 84 57.1
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 2.9e-12 75.5 109 46.8
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 4.9e-12 74.7 108 47.2
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 4.9e-12 74.7 108 47.2
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 1.1e-11 73.6 85 56.5
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 1.4e-11 73.2 87 55.2
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 1.9e-11 72.8 109 44.0
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 2.4e-11 72.4 55 69.1
Rhsim11G0153200 Rhododendron simsii HOM05D007107 ORTHO05D009198 2.4e-11 72.4 70 61.4
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 3.2e-11 72.0 86 52.3
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 5.4e-11 71.2 87 52.9
Medtr1g106215 Medicago truncatula HOM05D007107 ORTHO05D009198 9.3e-11 70.5 115 44.3
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 9.3e-11 70.5 96 52.1
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 9.3e-11 70.5 89 49.4
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 1.2e-10 70.1 90 48.9
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 1.6e-10 69.7 95 52.6
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 2.7e-10 68.9 59 64.4
AT3G19615 Arabidopsis thaliana HOM05D007107 ORTHO05D009198 2.7e-10 68.9 59 64.4
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 2.7e-10 68.9 66 59.1
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 3.5e-10 68.6 91 48.4
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 4.6e-10 68.2 98 44.9
BcaC01g03614 Brassica carinata HOM05D007107 ORTHO05D009198 6.0e-10 67.8 107 42.1
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 6.0e-10 67.8 107 42.1
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 6.0e-10 67.8 107 43.0
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 6.0e-10 67.8 74 52.7
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 6.0e-10 67.8 60 61.7
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 7.8e-10 67.4 80 52.5
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 7.8e-10 67.4 109 42.2
Psat6g214960 Pisum sativum HOM05D007107 ORTHO05D009198 1.0e-09 67.0 68 57.4
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 1.3e-09 66.6 59 59.3
BolC3t17339H Brassica oleracea HOM05D007107 ORTHO05D009198 1.7e-09 66.2 110 42.7
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 1.7e-09 66.2 107 43.9
Ca_11033_v3 Cicer arietinum L. HOM05D007107 ORTHO05D009198 2.3e-09 65.9 114 42.1
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 2.3e-09 65.9 96 47.9
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 3.0e-09 65.5 92 45.7
BcaC09g48926 Brassica carinata HOM05D007107 ORTHO05D009198 3.9e-09 65.1 87 49.4
C01p44500 Brassica napus HOM05D007107 ORTHO05D009198 3.9e-09 65.1 87 49.4
BolC1t04415H Brassica oleracea HOM05D007107 ORTHO05D009198 3.9e-09 65.1 87 49.4
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 3.9e-09 65.1 66 57.6
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 3.9e-09 65.1 66 57.6
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 5.1e-09 64.7 90 45.6
CSS0000313 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 6.6e-09 64.3 100 44.0
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 6.6e-09 64.3 87 50.6
PGSC0003DMG400042480 Solanum tuberosum HOM05D007107 ORTHO05D009198 1.1e-08 63.5 55 63.6
BcaB04g20690 Brassica carinata HOM05D007107 ORTHO05D009198 1.5e-08 63.2 60 60.0
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 1.9e-08 62.8 85 50.6
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.9e-08 62.8 66 56.1
A01p35080 Brassica napus HOM05D007107 ORTHO05D009198 4.3e-08 61.6 86 47.7
BraA01t03589Z Brassica rapa HOM05D007107 ORTHO05D009198 4.3e-08 61.6 86 47.7
ECA234G2040 Erigeron canadensis HOM05D007107 ORTHO05D009198 7.3e-08 60.8 65 52.3
Sed0004586 Sechium edule HOM05D007107 ORTHO05D009198 9.6e-08 60.5 102 40.2
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 2.8e-07 58.9 83 44.6
Oeu008318.1 Olea europaea HOM05D007107 ORTHO05D009198 3.6e-07 58.5 55 63.6
BcaB04g19054 Brassica carinata HOM05D007107 ORTHO05D009198 4.8e-07 58.2 81 50.6
ECA240G1449 Erigeron canadensis HOM05D007107 ORTHO05D009198 6.2e-07 57.8 57 52.6
RcHm_v2.0_Chr6g0253731 Rosa chinensis HOM05D007107 ORTHO05D025431 8.1e-07 57.4 92 41.3
SalBow6G0491 Salvia bowleyana HOM05D007107 ORTHO05D009198 8.1e-07 57.4 54 57.4
PGSC0003DMG400025747 Solanum tuberosum HOM05D007107 ORTHO05D009198 8.1e-07 57.4 44 63.6
CANSAT25G2317 Cannabis sativa HOM05D007107 ORTHO05D009198 4.0e-06 55.1 79 44.3
FvH4_2g04291 Fragaria vesca HOM05D007107 ORTHO05D025431 4.0e-06 55.1 102 41.2
PGSC0003DMG400025844 Solanum tuberosum HOM05D007107 ORTHO05D009198 4.0e-06 55.1 84 45.2


User provided reference genes

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