Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 0.0e+00 1315.1 835 100.0
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 0.0e+00 1189.9 838 92.8
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 5.0e-117 426.4 609 49.8
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 3.9e-101 373.6 778 39.8
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 1.3e-83 315.5 623 39.5
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 1.3e-83 315.5 532 44.2
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 2.1e-83 314.7 429 46.9
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 6.4e-80 303.1 622 41.2
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 1.6e-78 298.5 550 43.1
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 2.7e-78 297.7 437 45.5
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 9.6e-76 289.3 395 49.4
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 2.1e-75 288.1 608 40.3
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 3.7e-75 287.3 574 39.2
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 3.4e-73 280.8 521 40.7
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 7.6e-73 279.6 534 42.3
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 5.5e-71 273.5 632 38.0
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 1.6e-70 271.9 402 47.5
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 7.9e-70 269.6 475 41.7
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.0e-69 269.2 475 41.5
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.0e-69 267.7 475 41.3
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.1e-68 265.8 475 41.3
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 5.7e-68 263.5 475 41.9
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 9.7e-68 262.7 390 46.4
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 9.7e-68 262.7 358 52.5
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.2e-67 261.5 605 37.7
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 4.1e-66 257.3 510 41.6
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 4.1e-66 257.3 494 42.3
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 1.3e-64 252.3 541 40.7
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 1.3e-64 252.3 606 36.0
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 1.6e-62 245.4 565 37.3
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 3.6e-62 244.2 569 38.0
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 4.6e-62 243.8 595 36.1
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 6.1e-62 243.4 616 38.5
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 2.5e-60 238.0 506 39.3
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 7.4e-60 236.5 645 37.1
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 4.1e-58 230.7 523 39.6
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 6.9e-58 229.9 575 36.0
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 6.9e-58 229.9 386 48.4
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 7.7e-57 226.5 444 40.3
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 2.9e-56 224.6 433 40.9
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 5.5e-55 220.3 454 41.0
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 3.6e-54 217.6 481 37.6
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 3.9e-53 214.2 562 33.3
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 2.0e-52 211.8 454 40.5
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 4.4e-52 210.7 481 37.0
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 1.2e-49 202.6 324 42.6
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 2.6e-49 201.4 482 36.1
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 4.2e-47 194.1 351 39.9
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 2.3e-45 188.3 387 38.5
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 6.7e-45 186.8 422 33.9
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 1.5e-44 185.7 359 40.7
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 1.5e-44 185.7 543 33.9
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 9.7e-44 183.0 373 37.8
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 1.3e-43 182.6 434 35.5
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 2.8e-43 181.4 330 39.4
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 6.3e-43 180.3 494 32.0
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 4.1e-42 177.6 425 34.8
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 4.1e-42 177.6 420 36.2
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 5.3e-42 177.2 342 37.7
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 9.1e-42 176.4 351 36.5
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 9.1e-42 176.4 446 33.4
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 1.2e-41 176.0 492 31.5
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 1.3e-40 172.6 554 31.6
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 2.9e-40 171.4 422 37.0
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 1.1e-39 169.5 263 42.2
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 1.1e-39 169.5 495 33.5
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 1.5e-39 169.1 399 33.8
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 1.5e-39 169.1 454 35.0
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 3.2e-39 167.9 530 34.5
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 7.2e-39 166.8 498 31.7
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 5.7e-36 157.1 366 34.2
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 1.3e-35 156.0 383 34.5
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 1.3e-35 156.0 343 37.0
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 2.2e-35 155.2 219 42.9
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 3.1e-34 151.4 262 40.8
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 1.6e-33 149.1 339 33.0
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 1.6e-33 149.1 437 33.2
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 2.0e-33 148.7 412 33.7
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 2.9e-32 144.8 219 42.0
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 8.5e-32 143.3 528 33.5
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 1.1e-31 142.9 408 34.1
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 2.5e-31 141.7 442 35.3
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 4.2e-31 141.0 267 38.2
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 1.2e-28 132.9 337 34.7
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 5.7e-28 130.6 354 31.9
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.7e-27 127.9 341 32.0
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.4e-26 125.2 354 31.4
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 2.4e-26 125.2 435 31.5
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 1.2e-25 122.9 465 31.8
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.6e-25 122.5 355 32.4
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 2.9e-24 118.2 139 49.6
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 3.8e-24 117.9 433 31.9
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 6.6e-24 117.1 496 30.8
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 1.9e-23 115.5 266 35.0
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 1.2e-22 112.8 329 34.0
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 1.2e-22 112.8 399 32.1
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 2.1e-22 112.1 220 35.0
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 2.1e-22 112.1 220 35.0
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 3.6e-22 111.3 280 32.1
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 3.6e-22 111.3 371 29.9
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 5.2e-21 107.5 482 28.8
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 6.8e-21 107.1 480 28.1
QL04p036188 Quercus lobata HOM05D006954 ORTHO05D008729 6.8e-21 107.1 345 32.8
arahy.Tifrunner.gnm1.ann1.ADMQ1S Arachis hypogaea HOM05D006954 ORTHO05D008729 7.5e-20 103.6 261 31.8
arahy.Tifrunner.gnm1.ann1.7WP6A4 Arachis hypogaea HOM05D006954 ORTHO05D008729 1.7e-19 102.4 260 30.8
Lj6C70T8 Lonicera japonica HOM05D006954 ORTHO05D008729 2.9e-16 91.7 124 49.2
Zm00001eb391500 Zea mays HOM05D006954 ORTHO05D008729 5.0e-16 90.9 314 28.7
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 1.5e-15 89.4 159 39.6
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 1.9e-15 89.0 479 28.2
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 4.7e-14 84.3 320 26.9
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 8.9e-13 80.1 447 28.4
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 2.0e-12 79.0 478 24.5
Sopen06g020850 Solanum pennellii HOM05D020458 ORTHO05D022160 7.5e-12 77.0 602 26.6
ATR0317G083 Amborella trichopoda HOM05D006954 ORTHO05D008729 9.2e-10 70.1 539 26.5
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 1.6e-09 69.3 207 29.0
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 2.7e-09 68.6 226 25.7
Solyc06g060730.3 Solanum lycopersicum HOM05D020458 ORTHO05D022160 1.0e-08 66.6 672 25.4
Actinidia22764 Actinidia chinensis HOM05D006954 ORTHO05D008729 2.3e-08 65.5 150 40.0
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 3.9e-08 64.7 198 27.8
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 5.0e-08 64.3 213 27.2
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 1.1e-07 63.2 201 27.9
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 1.9e-07 62.4 195 30.3
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 2.5e-07 62.0 207 28.5
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 4.3e-07 61.2 199 28.6
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 5.6e-07 60.8 104 34.6
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 9.5e-07 60.1 195 23.6
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 1.2e-06 59.7 195 26.2
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 1.2e-06 59.7 198 26.3
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 1.6e-06 59.3 197 29.4
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 2.8e-06 58.5 199 27.1
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 2.8e-06 58.5 198 24.7
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 3.6e-06 58.2 204 25.5
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 4.7e-06 57.8 197 23.9
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 4.7e-06 57.8 210 27.1
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 4.7e-06 57.8 192 26.0
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 8.0e-06 57.0 198 23.7
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 8.0e-06 57.0 204 24.0
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 8.0e-06 57.0 198 24.2


User provided reference genes

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